NO13G02270, NO13G02270 (gene) Nannochloropsis oceanica

Overview
NameNO13G02270
Unique NameNO13G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length827
Alignment locationchr13:634542..635368 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:634542..635368 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO13G02270 vs. NCBI_GenBank
Match: EWM21897.1 (hypothetical protein Naga_100231g2 [Nannochloropsis gaditana])

HSP 1 Score: 235.0 bits (598), Expect = 1.800e-58
Identity = 120/168 (71.43%), Postives = 150/168 (89.29%), Query Frame = 0 
Query:    1 MAITLLEPPSPYLLPLLFFVILFEALLILGKKQRCKPVALNIKALTLRKYELAVAMKGLGIP-DFVEKSKLERELIQVDKNLAPQKERVLAQATAYETVATKVRYGVYAMLVAIFWRTPLLVMTPAATWPLSSFFGFPRLGPGAVGVAATISMVKAVLKPLTPLLSTV 168
            MAITL+EPPSPY LPLL F++LFE  L+LGK+Q+CK + L IK+LTLRK+ELA+AMK LGIP DFV+KSKLERELIQV+K+LAP++E+VLA+A  Y+ +A++++YGVYA+LV +FWRT L+VM+PAATWPLSSFFGFPRLG GAVGV+A ISM KAV+KP TPLLS+V
Sbjct:    1 MAITLVEPPSPYFLPLLIFIVLFEVALLLGKRQQCKSLTLEIKSLTLRKFELALAMKSLGIPTDFVKKSKLERELIQVEKDLAPRREQVLARAKDYDALASRLQYGVYALLVIVFWRTRLVVMSPAATWPLSSFFGFPRLGLGAVGVSAVISMAKAVIKPFTPLLSSV 168
The following BLAST results are available for this feature:
BLAST of NO13G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21897.11.800e-5871.43hypothetical protein Naga_100231g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001670NSK001670Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02270.1NO13G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596311gene_6785Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100231g2gene8545Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02270.1NO13G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02270 ID=NO13G02270|Name=NO13G02270|organism=Nannochloropsis oceanica|type=gene|length=827bp
ATGGCCATCACGCTGCTGGAGCCTCCGTCGCCGTATTTGCTACCGCTCCT
TTTCTTTGTAATTCTGTTCGAGGCACTTCTAATCTTGGGCAAAAAGCAAC
GGTGTAAACCCGTAGCCCTGAATATCAAGGCTTTGACCTTGCGCAAGTAC
GAGCTGGCGGTGGCCATGAAAGGGgtaagtgctcggagaaggcgtggaca
ggacggcgggcatgatggtgcgtggttctggaggcgaggcgtgttatatg
gtttacatcggccacctacttctacccctggtctcacgcctcagcgacct
atccacacacccctgctgcgttagccccactcggtaggagctaatgaaaa
ggtgccggaagatctcatcctttgggtactccatccctctgccaaaccgc
agtgactgcgctctaacgtgacgtcctccattctgcatatgggtcacagg
tcctcgcaatgttttctgaactaaccatcacaaaccccactttacagCTC
GGCATTCCGGACTTCGTAGAAAAATCCAAACTGGAGCGCGAGCTCATCCA
AGTAGACAAGAACCTGGCCCCACAGAAGGAACGGGTGCTCGCCCAGGCCA
CTGCATACGAGACCGTCGCAACCAAAGTCCGATACGGGGTTTATGCTATG
CTGGTGGCGATTTTCTGGCGGACGCCACTTTTGGTCATGACCCCGGCAGC
CACCTGGCCTTTGTCTTCCTTTTTTGGCTTTCCACGCTTGGGACCAGGGG
CAGTGGGGGTGGCGGCGACGATTTCTATGGTCAAGGCAGTGTTGAAGCCA
CTGACACCCTTGTTGAGTACCGTATAA
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protein sequence of NO13G02270.1

>NO13G02270.1-protein ID=NO13G02270.1-protein|Name=NO13G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MAITLLEPPSPYLLPLLFFVILFEALLILGKKQRCKPVALNIKALTLRKY
ELAVAMKGLGIPDFVEKSKLERELIQVDKNLAPQKERVLAQATAYETVAT
KVRYGVYAMLVAIFWRTPLLVMTPAATWPLSSFFGFPRLGPGAVGVAATI
SMVKAVLKPLTPLLSTV*
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Synonyms
Publications