NO13G02270.1, NO13G02270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02270.1
Unique NameNO13G02270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr13:634542..635368 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:634542..635368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02270.1 vs.
Match: EWM21897.1 (hypothetical protein Naga_100231g2 [Nannochloropsis gaditana])

HSP 1 Score: 235.0 bits (598), Expect = 1.800e-58
Identity = 120/168 (71.43%), Postives = 150/168 (89.29%), Query Frame = 0 
Query:    1 MAITLLEPPSPYLLPLLFFVILFEALLILGKKQRCKPVALNIKALTLRKYELAVAMKGLGIP-DFVEKSKLERELIQVDKNLAPQKERVLAQATAYETVATKVRYGVYAMLVAIFWRTPLLVMTPAATWPLSSFFGFPRLGPGAVGVAATISMVKAVLKPLTPLLSTV 168
            MAITL+EPPSPY LPLL F++LFE  L+LGK+Q+CK + L IK+LTLRK+ELA+AMK LGIP DFV+KSKLERELIQV+K+LAP++E+VLA+A  Y+ +A++++YGVYA+LV +FWRT L+VM+PAATWPLSSFFGFPRLG GAVGV+A ISM KAV+KP TPLLS+V
Sbjct:    1 MAITLVEPPSPYFLPLLIFIVLFEVALLLGKRQQCKSLTLEIKSLTLRKFELALAMKSLGIPTDFVKKSKLERELIQVEKDLAPRREQVLARAKDYDALASRLQYGVYALLVIVFWRTRLVVMSPAATWPLSSFFGFPRLGLGAVGVSAVISMAKAVIKPFTPLLSSV 168
The following BLAST results are available for this feature:
BLAST of NO13G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21897.11.800e-5871.43hypothetical protein Naga_100231g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02270NO13G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02270.1NO13G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02270.1.cds1NO13G02270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02270.1.cds2NO13G02270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02270.1 ID=NO13G02270.1|Name=NO13G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
ATGGCCATCACGCTGCTGGAGCCTCCGTCGCCGTATTTGCTACCGCTCCT
TTTCTTTGTAATTCTGTTCGAGGCACTTCTAATCTTGGGCAAAAAGCAAC
GGTGTAAACCCGTAGCCCTGAATATCAAGGCTTTGACCTTGCGCAAGTAC
GAGCTGGCGGTGGCCATGAAAGGGCTCGGCATTCCGGACTTCGTAGAAAA
ATCCAAACTGGAGCGCGAGCTCATCCAAGTAGACAAGAACCTGGCCCCAC
AGAAGGAACGGGTGCTCGCCCAGGCCACTGCATACGAGACCGTCGCAACC
AAAGTCCGATACGGGGTTTATGCTATGCTGGTGGCGATTTTCTGGCGGAC
GCCACTTTTGGTCATGACCCCGGCAGCCACCTGGCCTTTGTCTTCCTTTT
TTGGCTTTCCACGCTTGGGACCAGGGGCAGTGGGGGTGGCGGCGACGATT
TCTATGGTCAAGGCAGTGTTGAAGCCACTGACACCCTTGTTGAGTACCGT
ATAA
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protein sequence of NO13G02270.1

>NO13G02270.1-protein ID=NO13G02270.1-protein|Name=NO13G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MAITLLEPPSPYLLPLLFFVILFEALLILGKKQRCKPVALNIKALTLRKY
ELAVAMKGLGIPDFVEKSKLERELIQVDKNLAPQKERVLAQATAYETVAT
KVRYGVYAMLVAIFWRTPLLVMTPAATWPLSSFFGFPRLGPGAVGVAATI
SMVKAVLKPLTPLLSTV*
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mRNA from alignment at chr13:634542..635368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02270.1 ID=NO13G02270.1|Name=NO13G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=827bp|location=Sequence derived from alignment at chr13:634542..635368- (Nannochloropsis oceanica)
ATGGCCATCACGCTGCTGGAGCCTCCGTCGCCGTATTTGCTACCGCTCCT
TTTCTTTGTAATTCTGTTCGAGGCACTTCTAATCTTGGGCAAAAAGCAAC
GGTGTAAACCCGTAGCCCTGAATATCAAGGCTTTGACCTTGCGCAAGTAC
GAGCTGGCGGTGGCCATGAAAGGGGTAAGTGCTCGGAGAAGGCGTGGACA
GGACGGCGGGCATGATGGTGCGTGGTTCTGGAGGCGAGGCGTGTTATATG
GTTTACATCGGCCACCTACTTCTACCCCTGGTCTCACGCCTCAGCGACCT
ATCCACACACCCCTGCTGCGTTAGCCCCACTCGGTAGGAGCTAATGAAAA
GGTGCCGGAAGATCTCATCCTTTGGGTACTCCATCCCTCTGCCAAACCGC
AGTGACTGCGCTCTAACGTGACGTCCTCCATTCTGCATATGGGTCACAGG
TCCTCGCAATGTTTTCTGAACTAACCATCACAAACCCCACTTTACAGCTC
GGCATTCCGGACTTCGTAGAAAAATCCAAACTGGAGCGCGAGCTCATCCA
AGTAGACAAGAACCTGGCCCCACAGAAGGAACGGGTGCTCGCCCAGGCCA
CTGCATACGAGACCGTCGCAACCAAAGTCCGATACGGGGTTTATGCTATG
CTGGTGGCGATTTTCTGGCGGACGCCACTTTTGGTCATGACCCCGGCAGC
CACCTGGCCTTTGTCTTCCTTTTTTGGCTTTCCACGCTTGGGACCAGGGG
CAGTGGGGGTGGCGGCGACGATTTCTATGGTCAAGGCAGTGTTGAAGCCA
CTGACACCCTTGTTGAGTACCGTATAA
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Coding sequence (CDS) from alignment at chr13:634542..635368-

>NO13G02270.1 ID=NO13G02270.1|Name=NO13G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr13:634542..635368- (Nannochloropsis oceanica)
ATGGCCATCACGCTGCTGGAGCCTCCGTCGCCGTATTTGCTACCGCTCCT
TTTCTTTGTAATTCTGTTCGAGGCACTTCTAATCTTGGGCAAAAAGCAAC
GGTGTAAACCCGTAGCCCTGAATATCAAGGCTTTGACCTTGCGCAAGTAC
GAGCTGGCGGTGGCCATGAAAGGGCTCGGCATTCCGGACTTCGTAGAAAA
ATCCAAACTGGAGCGCGAGCTCATCCAAGTAGACAAGAACCTGGCCCCAC
AGAAGGAACGGGTGCTCGCCCAGGCCACTGCATACGAGACCGTCGCAACC
AAAGTCCGATACGGGGTTTATGCTATGCTGGTGGCGATTTTCTGGCGGAC
GCCACTTTTGGTCATGACCCCGGCAGCCACCTGGCCTTTGTCTTCCTTTT
TTGGCTTTCCACGCTTGGGACCAGGGGCAGTGGGGGTGGCGGCGACGATT
TCTATGGTCAAGGCAGTGTTGAAGCCACTGACACCCTTGTTGAGTACCGT
ATAA
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Synonyms
Publications