NO13G02170, NO13G02170 (gene) Nannochloropsis oceanica

Overview
NameNO13G02170
Unique NameNO13G02170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1899
Alignment locationchr13:612516..614414 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:612516..614414 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G02170 vs. NCBI_GenBank
Match: EWM21886.1 (hypothetical protein Naga_100159g10 [Nannochloropsis gaditana])

HSP 1 Score: 228.4 bits (581), Expect = 6.200e-56
Identity = 239/620 (38.55%), Postives = 290/620 (46.77%), Query Frame = 0 
Query:   18 LLALICAHQPYTAQAFTGGTGGFSLSELPEELFDEDGTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHASWETLRTQGHKALVPSLVTAATVAVGATGRVLQKRYGSTMTRMWQEHQEARRLRLEKRLLEREIKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQRYRPDLK-KTYNNQKARQG-----RLADDLQETVAELEAKVQALQGEVESKTDMASRAQSSRVEELNNARVVIDQLRKEVEEARGAKEHMQGELRQYQVRLQALKDQEKNGSGSL--SEDDTQRLRADIEAQLRQEYAHSRAQERNAWAKEVRHQTVADISAQSKAERSKYEADLVDLYRRRLKEEVAKRDVVMAERLHAQDIEYRRQCEELRMKVQGLLRDRDQHMKEKVALHAREWRERVGSPGANMNKDVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSASDVPSHLHYSEIGDEEGVGAVLMDAEEAESRAVTLAVGTSEEEGKXXXXXXXXXXXXXXXXXXQRQRGDRSAAETGVDARRDDGSVSESSRRYSSLTRSRR 630
            L A I A +    + FTG +GGFSLSE+PE+L DED  S                              A+HA W TLR Q HKAL+PS+   ATV  GATGR+L KRY S + R W +H+ AR                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                    Q YRPDLK K++ +  +  G     R A+D +  V ELE K+ ALQ EV  K +M S+                                                       G    SE+D   LR D+E ++RQEYA SRAQ++ AWA+EVRHQTVA+I+AQ+ AER KYEADLV+LYRRRLKEEVAKRD VM ERL AQD+EYRRQCEELR+KVQGLLR+RD  +++K+ LHAREW++RVG+ G    +                                                       RG AS         +   E G+ A LMDAEEAE+RA T AVG + E G+                  QRQR    A+  G+      G    S RR +S    RR
Sbjct:   10 LFAFILAQE--VVRGFTGSSGGFSLSEIPEDLLDEDDAS--IVGNADGTDSWTSPISLSRTGGRRSGSLANHAMWNTLREQSHKALLPSI---ATVLAGATGRILHKRYASVIRRAWHDHRAAR--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIQARDELRRARFQEVSSMPGEDEEQAHQRDRLQQQQHYRPDLKRKSFKDMLSFSGPSSSRRTAEDWRRVVGELETKIAALQREVREKAEMVSKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKEPSENDLHLLRTDLEMRIRQEYAESRAQDQEAWAREVRHQTVAEITAQTTAEREKYEADLVELYRRRLKEEVAKRDAVMEERLQAQDVEYRRQCEELRLKVQGLLRERDHSLRDKLVLHAREWQQRVGAKGGASKRQ---------------------RAAGGQAPVRVAGSGVNGSLFRGKGASAPSKVPRGGASAPTDTAQEWKGTREGGLVAELMDAEEAEARASTRAVG-AREGGQGVPQGGDDGQEPSKLVQQQRQRVSWGASGVGLTGVGGGG----SGRRATSGAVGRR 588
The following BLAST results are available for this feature:
BLAST of NO13G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21886.16.200e-5638.55hypothetical protein Naga_100159g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001678NSK001678Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02170.1NO13G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631778gene_6793Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100159g10gene8553Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02170.1NO13G02170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02170 ID=NO13G02170|Name=NO13G02170|organism=Nannochloropsis oceanica|type=gene|length=1899bp
ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT
ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA
CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT
GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT
GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA
GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC
AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC
CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT
GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG
GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG
CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA
AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA
ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA
ACAGCAGCAACAAGATCAACTGTCACAGCGCTACCGCCCCGATTTGAAAA
AGACATACAATAATCAAAAAGCGCGGCAAGGTCGTTTGGCAGATGATTTG
CAAGAGACTGTTGCTGAGTTAGAAGCAAAGGTACAGGCCCTGCAAGGAGA
GGTGGAGAGTAAGACAGACATGGCTTCCCGTGCCCAATCCTCCCGCGTCG
AAGAGCTCAACAACGCCCGCGTCGTCATCGATCAACTGCGGAAAGAAGTA
GAGGAAGCGCGAGGAGCGAAAGAGCACATGCAAGGGGAGCTCCGGCAGTA
CCAAGTGAGGCTGCAGGCCCTTAAAGATCAAGAAAAAAATGGCAGTGGTA
GCTTGTCGGAGGACGACACCCAACGCTTGCGTGCCGATATAGAAGCACAA
CTTCGTCAAGAGTATGCCCACAGCCGCGCACAGGAACGAAATGCATGGGC
CAAGGAGGTGCGTCATCAGACAGTGGCTGATATTTCGGCCCAGAGCAAGG
CGGAACGCAGTAAGTATGAGGCGGACCTGGTGGATCTGTATCGACGACGT
CTCAAGGAAGAGGTGGCCAAGCGGGATGTAGTGATGGCGGAGAGGCTGCA
TGCCCAAGACATTGAGTACAGAAGGCAGTGTGAGGAGCTCAGGATGAAGG
TGCAGGGCCTGTTGCGGGATCGTGACCAGCACATGAAGGAGAAGGTGGCC
TTGCACGCACGCGAGTGGCGGGAACGTGTGGGTTCCCCGGGCGCCAACAT
GAACAAGGATGTGAAGCAGCAGCAACAGCAGCAACAGCAGCAAAATCCTG
CACCACAACCTCATGTTCGCTCTTCCTCCGGAGGAGGTGGTGATGGTGGA
CTCTTTCGACGAAAGGGTGCGGCGTCCTCGTCCTCGTTCTCCAAGGTTGT
CCGAGGGGGAGGGGGAGGAGTGCGGGGCTCAGCCTCCGATGTTCCCAGTC
ACCTTCATTACAGTGAGATCGGGGACGAGGAAGGAGTGGGAGCCGTGCTG
ATGGACGCGGAGGAGGCAGAATCCAGAGCTGTCACACTGGCAGTAGGCAC
CTCAGAGGAGGAGGGAAAGGTGAGAAGGAATGAGGAGGTGGAGGAACGAC
GACGACGTCGGTTGAAGATGCTGCAGAGACAACGGGGTGACCGGTCAGCA
GCTGAAACTGGGGTGGATGCTCGAAGGGATGACGGCAGTGTGAGCGAAAG
CAGTAGAAGATACTCCTCGTTGACGAGGAGCAGAAGAGAGCGGGTGTGA
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protein sequence of NO13G02170.1

>NO13G02170.1-protein ID=NO13G02170.1-protein|Name=NO13G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MRALVQALVAGPVALILLLALICAHQPYTAQAFTGGTGGFSLSELPEELF
DEDGTSTTSSTTDFSDLSMRSHKLSARASGSRGSGQASHASWETLRTQGH
KALVPSLVTAATVAVGATGRVLQKRYGSTMTRMWQEHQEARRLRLEKRLL
EREIKEEQRRYQQEMRRMTEEQERDESEATAVAKAEFEAEEELRRMRLRV
TGSMTAEKDELAQQQQQQQQQDQLSQRYRPDLKKTYNNQKARQGRLADDL
QETVAELEAKVQALQGEVESKTDMASRAQSSRVEELNNARVVIDQLRKEV
EEARGAKEHMQGELRQYQVRLQALKDQEKNGSGSLSEDDTQRLRADIEAQ
LRQEYAHSRAQERNAWAKEVRHQTVADISAQSKAERSKYEADLVDLYRRR
LKEEVAKRDVVMAERLHAQDIEYRRQCEELRMKVQGLLRDRDQHMKEKVA
LHAREWRERVGSPGANMNKDVKQQQQQQQQQNPAPQPHVRSSSGGGGDGG
LFRRKGAASSSSFSKVVRGGGGGVRGSASDVPSHLHYSEIGDEEGVGAVL
MDAEEAESRAVTLAVGTSEEEGKVRRNEEVEERRRRRLKMLQRQRGDRSA
AETGVDARRDDGSVSESSRRYSSLTRSRRERV*
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Synonyms
Publications