NO13G02170.1, NO13G02170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02170.1
Unique NameNO13G02170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1899
Alignment locationchr13:612516..614414 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:612516..614414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02170.1 vs.
Match: EWM21886.1 (hypothetical protein Naga_100159g10 [Nannochloropsis gaditana])

HSP 1 Score: 424.5 bits (1090), Expect = 5.900e-115
Identity = 313/620 (50.48%), Postives = 394/620 (63.55%), Query Frame = 0
Query:   18 LLALICAHQPYTAQAFTGGTGGFSLSELPEELFDEDGTSTTSSTTDFSDLSMRSHKLSARASGSRGSGQASHASWETLRTQGHKALVPSLVTAATVAVGATGRVLQKRYGSTMTRMWQEHQEARRLRLEKRLLEREIKEEQRRYQQEMRRMTEEQERDESEATAVAKAEFEAEEELRRMRLRVTGSMTAEKDELAQQQQQQQQQDQLSQRYRPDLK-KTYNNQKARQG-----RLADDLQETVAELEAKVQALQGEVESKTDMASRAQSSRVEELNNARVVIDQLRKEVEEARGAKEHMQGELRQYQVRLQALKDQEKNGSGSL--SEDDTQRLRADIEAQLRQEYAHSRAQERNAWAKEVRHQTVADISAQSKAERSKYEADLVDLYRRRLKEEVAKRDVVMAERLHAQDIEYRRQCEELRMKVQGLLRDRDQHMKEKVALHAREWRERVGSPGANMNKDVKQQQQQQQQQNPAPQPHVRSSSGGGGDGGLFRRKGAASSSSFSKVVRGGGGGVRGSASDVPSHLHYSEIGDEEGVGAVLMDAEEAESRAVTLAVGTSEEEGKVRRNEEVEERRRRRLKMLQRQRGDRSAAETGVDARRDDGSVSESSRRYSSLTRSRR 630
            L A I A +    + FTG +GGFSLSE+PE+L DED  S   +  D +D S  S    +R  G R    A+HA W TLR Q HKAL+PS+   ATV  GATGR+L KRY S + R W +H+ AR L  EKR LEREI+EEQ RYQQEMRR++EEQE    E  A  +AE +A +ELRR R +   SM  E +E A Q+ + QQQ    Q YRPDLK K++ +  +  G     R A+D +  V ELE K+ ALQ EV  K +M S+ QSS+VEELN+AR V+DQLRKE+E ARG KEH++G+LRQ QVRLQ LKDQ + G G    SE+D   LR D+E ++RQEYA SRAQ++ AWA+EVRHQTVA+I+AQ+ AER KYEADLV+LYRRRLKEEVAKRD VM ERL AQD+EYRRQCEELR+KVQGLLR+RD  +++K+ LHAREW++RVG+ G             ++Q+    Q  VR  +G G +G LFR KGA   S+ SKV RGG      +A +            E G+ A LMDAEEAE+RA T AVG  E    V +  + + +   +L   QRQR    A+  G+      G    S RR +S    RR
Sbjct:   10 LFAFILAQE--VVRGFTGSSGGFSLSEIPEDLLDEDDASIVGNA-DGTD-SWTSPISLSRTGGRRSGSLANHAMWNTLREQSHKALLPSI---ATVLAGATGRILHKRYASVIRRAWHDHRAARHLGKEKRRLEREIQEEQGRYQQEMRRISEEQE----ELDAAEEAEIQARDELRRARFQEVSSMPGEDEEQAHQRDRLQQQ----QHYRPDLKRKSFKDMLSFSGPSSSRRTAEDWRRVVGELETKIAALQREVREKAEMVSKLQSSKVEELNSARSVVDQLRKELEGARGMKEHLEGQLRQSQVRLQTLKDQAEEGQGQKEPSENDLHLLRTDLEMRIRQEYAESRAQDQEAWAREVRHQTVAEITAQTTAEREKYEADLVELYRRRLKEEVAKRDAVMEERLQAQDVEYRRQCEELRLKVQGLLRERDHSLRDKLVLHAREWQQRVGAKGG----------ASKRQRAAGGQAPVR-VAGSGVNGSLFRGKGA---SAPSKVPRGGASAPTDTAQEWKG-------TREGGLVAELMDAEEAEARASTRAVGAREGGQGVPQGGD-DGQEPSKLVQQQRQRVSWGASGVGLTGVGGGG----SGRRATSGAVGRR 588          
The following BLAST results are available for this feature:
BLAST of NO13G02170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21886.15.900e-11550.48hypothetical protein Naga_100159g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02170NO13G02170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02170.1NO13G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02170.1.cds1NO13G02170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02170.1 ID=NO13G02170.1|Name=NO13G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp
ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT
ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA
CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT
GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT
GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA
GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC
AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC
CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT
GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG
GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG
CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA
AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA
ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA
ACAGCAGCAACAAGATCAACTGTCACAGCGCTACCGCCCCGATTTGAAAA
AGACATACAATAATCAAAAAGCGCGGCAAGGTCGTTTGGCAGATGATTTG
CAAGAGACTGTTGCTGAGTTAGAAGCAAAGGTACAGGCCCTGCAAGGAGA
GGTGGAGAGTAAGACAGACATGGCTTCCCGTGCCCAATCCTCCCGCGTCG
AAGAGCTCAACAACGCCCGCGTCGTCATCGATCAACTGCGGAAAGAAGTA
GAGGAAGCGCGAGGAGCGAAAGAGCACATGCAAGGGGAGCTCCGGCAGTA
CCAAGTGAGGCTGCAGGCCCTTAAAGATCAAGAAAAAAATGGCAGTGGTA
GCTTGTCGGAGGACGACACCCAACGCTTGCGTGCCGATATAGAAGCACAA
CTTCGTCAAGAGTATGCCCACAGCCGCGCACAGGAACGAAATGCATGGGC
CAAGGAGGTGCGTCATCAGACAGTGGCTGATATTTCGGCCCAGAGCAAGG
CGGAACGCAGTAAGTATGAGGCGGACCTGGTGGATCTGTATCGACGACGT
CTCAAGGAAGAGGTGGCCAAGCGGGATGTAGTGATGGCGGAGAGGCTGCA
TGCCCAAGACATTGAGTACAGAAGGCAGTGTGAGGAGCTCAGGATGAAGG
TGCAGGGCCTGTTGCGGGATCGTGACCAGCACATGAAGGAGAAGGTGGCC
TTGCACGCACGCGAGTGGCGGGAACGTGTGGGTTCCCCGGGCGCCAACAT
GAACAAGGATGTGAAGCAGCAGCAACAGCAGCAACAGCAGCAAAATCCTG
CACCACAACCTCATGTTCGCTCTTCCTCCGGAGGAGGTGGTGATGGTGGA
CTCTTTCGACGAAAGGGTGCGGCGTCCTCGTCCTCGTTCTCCAAGGTTGT
CCGAGGGGGAGGGGGAGGAGTGCGGGGCTCAGCCTCCGATGTTCCCAGTC
ACCTTCATTACAGTGAGATCGGGGACGAGGAAGGAGTGGGAGCCGTGCTG
ATGGACGCGGAGGAGGCAGAATCCAGAGCTGTCACACTGGCAGTAGGCAC
CTCAGAGGAGGAGGGAAAGGTGAGAAGGAATGAGGAGGTGGAGGAACGAC
GACGACGTCGGTTGAAGATGCTGCAGAGACAACGGGGTGACCGGTCAGCA
GCTGAAACTGGGGTGGATGCTCGAAGGGATGACGGCAGTGTGAGCGAAAG
CAGTAGAAGATACTCCTCGTTGACGAGGAGCAGAAGAGAGCGGGTGTGA
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protein sequence of NO13G02170.1

>NO13G02170.1-protein ID=NO13G02170.1-protein|Name=NO13G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MRALVQALVAGPVALILLLALICAHQPYTAQAFTGGTGGFSLSELPEELF
DEDGTSTTSSTTDFSDLSMRSHKLSARASGSRGSGQASHASWETLRTQGH
KALVPSLVTAATVAVGATGRVLQKRYGSTMTRMWQEHQEARRLRLEKRLL
EREIKEEQRRYQQEMRRMTEEQERDESEATAVAKAEFEAEEELRRMRLRV
TGSMTAEKDELAQQQQQQQQQDQLSQRYRPDLKKTYNNQKARQGRLADDL
QETVAELEAKVQALQGEVESKTDMASRAQSSRVEELNNARVVIDQLRKEV
EEARGAKEHMQGELRQYQVRLQALKDQEKNGSGSLSEDDTQRLRADIEAQ
LRQEYAHSRAQERNAWAKEVRHQTVADISAQSKAERSKYEADLVDLYRRR
LKEEVAKRDVVMAERLHAQDIEYRRQCEELRMKVQGLLRDRDQHMKEKVA
LHAREWRERVGSPGANMNKDVKQQQQQQQQQNPAPQPHVRSSSGGGGDGG
LFRRKGAASSSSFSKVVRGGGGGVRGSASDVPSHLHYSEIGDEEGVGAVL
MDAEEAESRAVTLAVGTSEEEGKVRRNEEVEERRRRRLKMLQRQRGDRSA
AETGVDARRDDGSVSESSRRYSSLTRSRRERV*
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mRNA from alignment at chr13:612516..614414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02170.1 ID=NO13G02170.1|Name=NO13G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp|location=Sequence derived from alignment at chr13:612516..614414- (Nannochloropsis oceanica)
ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA ACAGCAGCAACAAGATCAACTGTCACAGCGCTACCGCCCCGATTTGAAAA AGACATACAATAATCAAAAAGCGCGGCAAGGTCGTTTGGCAGATGATTTG CAAGAGACTGTTGCTGAGTTAGAAGCAAAGGTACAGGCCCTGCAAGGAGA GGTGGAGAGTAAGACAGACATGGCTTCCCGTGCCCAATCCTCCCGCGTCG AAGAGCTCAACAACGCCCGCGTCGTCATCGATCAACTGCGGAAAGAAGTA GAGGAAGCGCGAGGAGCGAAAGAGCACATGCAAGGGGAGCTCCGGCAGTA CCAAGTGAGGCTGCAGGCCCTTAAAGATCAAGAAAAAAATGGCAGTGGTA GCTTGTCGGAGGACGACACCCAACGCTTGCGTGCCGATATAGAAGCACAA CTTCGTCAAGAGTATGCCCACAGCCGCGCACAGGAACGAAATGCATGGGC CAAGGAGGTGCGTCATCAGACAGTGGCTGATATTTCGGCCCAGAGCAAGG CGGAACGCAGTAAGTATGAGGCGGACCTGGTGGATCTGTATCGACGACGT CTCAAGGAAGAGGTGGCCAAGCGGGATGTAGTGATGGCGGAGAGGCTGCA TGCCCAAGACATTGAGTACAGAAGGCAGTGTGAGGAGCTCAGGATGAAGG TGCAGGGCCTGTTGCGGGATCGTGACCAGCACATGAAGGAGAAGGTGGCC TTGCACGCACGCGAGTGGCGGGAACGTGTGGGTTCCCCGGGCGCCAACAT GAACAAGGATGTGAAGCAGCAGCAACAGCAGCAACAGCAGCAAAATCCTG CACCACAACCTCATGTTCGCTCTTCCTCCGGAGGAGGTGGTGATGGTGGA CTCTTTCGACGAAAGGGTGCGGCGTCCTCGTCCTCGTTCTCCAAGGTTGT CCGAGGGGGAGGGGGAGGAGTGCGGGGCTCAGCCTCCGATGTTCCCAGTC ACCTTCATTACAGTGAGATCGGGGACGAGGAAGGAGTGGGAGCCGTGCTG ATGGACGCGGAGGAGGCAGAATCCAGAGCTGTCACACTGGCAGTAGGCAC CTCAGAGGAGGAGGGAAAGGTGAGAAGGAATGAGGAGGTGGAGGAACGAC GACGACGTCGGTTGAAGATGCTGCAGAGACAACGGGGTGACCGGTCAGCA GCTGAAACTGGGGTGGATGCTCGAAGGGATGACGGCAGTGTGAGCGAAAG CAGTAGAAGATACTCCTCGTTGACGAGGAGCAGAAGAGAGCGGGTGTGA
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Coding sequence (CDS) from alignment at chr13:612516..614414-

>NO13G02170.1 ID=NO13G02170.1|Name=NO13G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at chr13:612516..614414- (Nannochloropsis oceanica)
ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT
ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA
CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT
GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT
GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA
GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC
AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC
CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT
GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG
GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG
CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA
AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA
ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA
ACAGCAGCAACAAGATCAACTGTCACAGCGCTACCGCCCCGATTTGAAAA
AGACATACAATAATCAAAAAGCGCGGCAAGGTCGTTTGGCAGATGATTTG
CAAGAGACTGTTGCTGAGTTAGAAGCAAAGGTACAGGCCCTGCAAGGAGA
GGTGGAGAGTAAGACAGACATGGCTTCCCGTGCCCAATCCTCCCGCGTCG
AAGAGCTCAACAACGCCCGCGTCGTCATCGATCAACTGCGGAAAGAAGTA
GAGGAAGCGCGAGGAGCGAAAGAGCACATGCAAGGGGAGCTCCGGCAGTA
CCAAGTGAGGCTGCAGGCCCTTAAAGATCAAGAAAAAAATGGCAGTGGTA
GCTTGTCGGAGGACGACACCCAACGCTTGCGTGCCGATATAGAAGCACAA
CTTCGTCAAGAGTATGCCCACAGCCGCGCACAGGAACGAAATGCATGGGC
CAAGGAGGTGCGTCATCAGACAGTGGCTGATATTTCGGCCCAGAGCAAGG
CGGAACGCAGTAAGTATGAGGCGGACCTGGTGGATCTGTATCGACGACGT
CTCAAGGAAGAGGTGGCCAAGCGGGATGTAGTGATGGCGGAGAGGCTGCA
TGCCCAAGACATTGAGTACAGAAGGCAGTGTGAGGAGCTCAGGATGAAGG
TGCAGGGCCTGTTGCGGGATCGTGACCAGCACATGAAGGAGAAGGTGGCC
TTGCACGCACGCGAGTGGCGGGAACGTGTGGGTTCCCCGGGCGCCAACAT
GAACAAGGATGTGAAGCAGCAGCAACAGCAGCAACAGCAGCAAAATCCTG
CACCACAACCTCATGTTCGCTCTTCCTCCGGAGGAGGTGGTGATGGTGGA
CTCTTTCGACGAAAGGGTGCGGCGTCCTCGTCCTCGTTCTCCAAGGTTGT
CCGAGGGGGAGGGGGAGGAGTGCGGGGCTCAGCCTCCGATGTTCCCAGTC
ACCTTCATTACAGTGAGATCGGGGACGAGGAAGGAGTGGGAGCCGTGCTG
ATGGACGCGGAGGAGGCAGAATCCAGAGCTGTCACACTGGCAGTAGGCAC
CTCAGAGGAGGAGGGAAAGGTGAGAAGGAATGAGGAGGTGGAGGAACGAC
GACGACGTCGGTTGAAGATGCTGCAGAGACAACGGGGTGACCGGTCAGCA
GCTGAAACTGGGGTGGATGCTCGAAGGGATGACGGCAGTGTGAGCGAAAG
CAGTAGAAGATACTCCTCGTTGACGAGGAGCAGAAGAGAGCGGGTGTGA
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Synonyms
Publications