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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:612516..614414 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02170.1 vs.
Match: EWM21886.1 (hypothetical protein Naga_100159g10 [Nannochloropsis gaditana]) HSP 1 Score: 424.5 bits (1090), Expect = 5.900e-115 Identity = 313/620 (50.48%), Postives = 394/620 (63.55%), Query Frame = 0
Query: 18 LLALICAHQPYTAQAFTGGTGGFSLSELPEELFDEDGTSTTSSTTDFSDLSMRSHKLSARASGSRGSGQASHASWETLRTQGHKALVPSLVTAATVAVGATGRVLQKRYGSTMTRMWQEHQEARRLRLEKRLLEREIKEEQRRYQQEMRRMTEEQERDESEATAVAKAEFEAEEELRRMRLRVTGSMTAEKDELAQQQQQQQQQDQLSQRYRPDLK-KTYNNQKARQG-----RLADDLQETVAELEAKVQALQGEVESKTDMASRAQSSRVEELNNARVVIDQLRKEVEEARGAKEHMQGELRQYQVRLQALKDQEKNGSGSL--SEDDTQRLRADIEAQLRQEYAHSRAQERNAWAKEVRHQTVADISAQSKAERSKYEADLVDLYRRRLKEEVAKRDVVMAERLHAQDIEYRRQCEELRMKVQGLLRDRDQHMKEKVALHAREWRERVGSPGANMNKDVKQQQQQQQQQNPAPQPHVRSSSGGGGDGGLFRRKGAASSSSFSKVVRGGGGGVRGSASDVPSHLHYSEIGDEEGVGAVLMDAEEAESRAVTLAVGTSEEEGKVRRNEEVEERRRRRLKMLQRQRGDRSAAETGVDARRDDGSVSESSRRYSSLTRSRR 630
L A I A + + FTG +GGFSLSE+PE+L DED S + D +D S S +R G R A+HA W TLR Q HKAL+PS+ ATV GATGR+L KRY S + R W +H+ AR L EKR LEREI+EEQ RYQQEMRR++EEQE E A +AE +A +ELRR R + SM E +E A Q+ + QQQ Q YRPDLK K++ + + G R A+D + V ELE K+ ALQ EV K +M S+ QSS+VEELN+AR V+DQLRKE+E ARG KEH++G+LRQ QVRLQ LKDQ + G G SE+D LR D+E ++RQEYA SRAQ++ AWA+EVRHQTVA+I+AQ+ AER KYEADLV+LYRRRLKEEVAKRD VM ERL AQD+EYRRQCEELR+KVQGLLR+RD +++K+ LHAREW++RVG+ G ++Q+ Q VR +G G +G LFR KGA S+ SKV RGG +A + E G+ A LMDAEEAE+RA T AVG E V + + + + +L QRQR A+ G+ G S RR +S RR
Sbjct: 10 LFAFILAQE--VVRGFTGSSGGFSLSEIPEDLLDEDDASIVGNA-DGTD-SWTSPISLSRTGGRRSGSLANHAMWNTLREQSHKALLPSI---ATVLAGATGRILHKRYASVIRRAWHDHRAARHLGKEKRRLEREIQEEQGRYQQEMRRISEEQE----ELDAAEEAEIQARDELRRARFQEVSSMPGEDEEQAHQRDRLQQQ----QHYRPDLKRKSFKDMLSFSGPSSSRRTAEDWRRVVGELETKIAALQREVREKAEMVSKLQSSKVEELNSARSVVDQLRKELEGARGMKEHLEGQLRQSQVRLQTLKDQAEEGQGQKEPSENDLHLLRTDLEMRIRQEYAESRAQDQEAWAREVRHQTVAEITAQTTAEREKYEADLVELYRRRLKEEVAKRDAVMEERLQAQDVEYRRQCEELRLKVQGLLRERDHSLRDKLVLHAREWQQRVGAKGG----------ASKRQRAAGGQAPVR-VAGSGVNGSLFRGKGA---SAPSKVPRGGASAPTDTAQEWKG-------TREGGLVAELMDAEEAEARASTRAVGAREGGQGVPQGGD-DGQEPSKLVQQQRQRVSWGASGVGLTGVGGGG----SGRRATSGAVGRR 588
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02170.1 ID=NO13G02170.1|Name=NO13G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA ACAGCAGCAACAAGATCAACTGTCACAGCGCTACCGCCCCGATTTGAAAA AGACATACAATAATCAAAAAGCGCGGCAAGGTCGTTTGGCAGATGATTTG CAAGAGACTGTTGCTGAGTTAGAAGCAAAGGTACAGGCCCTGCAAGGAGA GGTGGAGAGTAAGACAGACATGGCTTCCCGTGCCCAATCCTCCCGCGTCG AAGAGCTCAACAACGCCCGCGTCGTCATCGATCAACTGCGGAAAGAAGTA GAGGAAGCGCGAGGAGCGAAAGAGCACATGCAAGGGGAGCTCCGGCAGTA CCAAGTGAGGCTGCAGGCCCTTAAAGATCAAGAAAAAAATGGCAGTGGTA GCTTGTCGGAGGACGACACCCAACGCTTGCGTGCCGATATAGAAGCACAA CTTCGTCAAGAGTATGCCCACAGCCGCGCACAGGAACGAAATGCATGGGC CAAGGAGGTGCGTCATCAGACAGTGGCTGATATTTCGGCCCAGAGCAAGG CGGAACGCAGTAAGTATGAGGCGGACCTGGTGGATCTGTATCGACGACGT CTCAAGGAAGAGGTGGCCAAGCGGGATGTAGTGATGGCGGAGAGGCTGCA TGCCCAAGACATTGAGTACAGAAGGCAGTGTGAGGAGCTCAGGATGAAGG TGCAGGGCCTGTTGCGGGATCGTGACCAGCACATGAAGGAGAAGGTGGCC TTGCACGCACGCGAGTGGCGGGAACGTGTGGGTTCCCCGGGCGCCAACAT GAACAAGGATGTGAAGCAGCAGCAACAGCAGCAACAGCAGCAAAATCCTG CACCACAACCTCATGTTCGCTCTTCCTCCGGAGGAGGTGGTGATGGTGGA CTCTTTCGACGAAAGGGTGCGGCGTCCTCGTCCTCGTTCTCCAAGGTTGT CCGAGGGGGAGGGGGAGGAGTGCGGGGCTCAGCCTCCGATGTTCCCAGTC ACCTTCATTACAGTGAGATCGGGGACGAGGAAGGAGTGGGAGCCGTGCTG ATGGACGCGGAGGAGGCAGAATCCAGAGCTGTCACACTGGCAGTAGGCAC CTCAGAGGAGGAGGGAAAGGTGAGAAGGAATGAGGAGGTGGAGGAACGAC GACGACGTCGGTTGAAGATGCTGCAGAGACAACGGGGTGACCGGTCAGCA GCTGAAACTGGGGTGGATGCTCGAAGGGATGACGGCAGTGTGAGCGAAAG CAGTAGAAGATACTCCTCGTTGACGAGGAGCAGAAGAGAGCGGGTGTGA back to topprotein sequence of NO13G02170.1 >NO13G02170.1-protein ID=NO13G02170.1-protein|Name=NO13G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp MRALVQALVAGPVALILLLALICAHQPYTAQAFTGGTGGFSLSELPEELF DEDGTSTTSSTTDFSDLSMRSHKLSARASGSRGSGQASHASWETLRTQGH KALVPSLVTAATVAVGATGRVLQKRYGSTMTRMWQEHQEARRLRLEKRLL EREIKEEQRRYQQEMRRMTEEQERDESEATAVAKAEFEAEEELRRMRLRV TGSMTAEKDELAQQQQQQQQQDQLSQRYRPDLKKTYNNQKARQGRLADDL QETVAELEAKVQALQGEVESKTDMASRAQSSRVEELNNARVVIDQLRKEV EEARGAKEHMQGELRQYQVRLQALKDQEKNGSGSLSEDDTQRLRADIEAQ LRQEYAHSRAQERNAWAKEVRHQTVADISAQSKAERSKYEADLVDLYRRR LKEEVAKRDVVMAERLHAQDIEYRRQCEELRMKVQGLLRDRDQHMKEKVA LHAREWRERVGSPGANMNKDVKQQQQQQQQQNPAPQPHVRSSSGGGGDGG LFRRKGAASSSSFSKVVRGGGGGVRGSASDVPSHLHYSEIGDEEGVGAVL MDAEEAESRAVTLAVGTSEEEGKVRRNEEVEERRRRRLKMLQRQRGDRSA AETGVDARRDDGSVSESSRRYSSLTRSRRERV* back to topmRNA from alignment at chr13:612516..614414- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02170.1 ID=NO13G02170.1|Name=NO13G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp|location=Sequence derived from alignment at chr13:612516..614414- (Nannochloropsis oceanica) ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT
ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA
CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT
GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT
GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA
GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC
AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC
CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT
GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG
GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG
CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA
AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA
ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA
ACAGCAGCAACAAGATCAACTGTCACAGCGCTACCGCCCCGATTTGAAAA
AGACATACAATAATCAAAAAGCGCGGCAAGGTCGTTTGGCAGATGATTTG
CAAGAGACTGTTGCTGAGTTAGAAGCAAAGGTACAGGCCCTGCAAGGAGA
GGTGGAGAGTAAGACAGACATGGCTTCCCGTGCCCAATCCTCCCGCGTCG
AAGAGCTCAACAACGCCCGCGTCGTCATCGATCAACTGCGGAAAGAAGTA
GAGGAAGCGCGAGGAGCGAAAGAGCACATGCAAGGGGAGCTCCGGCAGTA
CCAAGTGAGGCTGCAGGCCCTTAAAGATCAAGAAAAAAATGGCAGTGGTA
GCTTGTCGGAGGACGACACCCAACGCTTGCGTGCCGATATAGAAGCACAA
CTTCGTCAAGAGTATGCCCACAGCCGCGCACAGGAACGAAATGCATGGGC
CAAGGAGGTGCGTCATCAGACAGTGGCTGATATTTCGGCCCAGAGCAAGG
CGGAACGCAGTAAGTATGAGGCGGACCTGGTGGATCTGTATCGACGACGT
CTCAAGGAAGAGGTGGCCAAGCGGGATGTAGTGATGGCGGAGAGGCTGCA
TGCCCAAGACATTGAGTACAGAAGGCAGTGTGAGGAGCTCAGGATGAAGG
TGCAGGGCCTGTTGCGGGATCGTGACCAGCACATGAAGGAGAAGGTGGCC
TTGCACGCACGCGAGTGGCGGGAACGTGTGGGTTCCCCGGGCGCCAACAT
GAACAAGGATGTGAAGCAGCAGCAACAGCAGCAACAGCAGCAAAATCCTG
CACCACAACCTCATGTTCGCTCTTCCTCCGGAGGAGGTGGTGATGGTGGA
CTCTTTCGACGAAAGGGTGCGGCGTCCTCGTCCTCGTTCTCCAAGGTTGT
CCGAGGGGGAGGGGGAGGAGTGCGGGGCTCAGCCTCCGATGTTCCCAGTC
ACCTTCATTACAGTGAGATCGGGGACGAGGAAGGAGTGGGAGCCGTGCTG
ATGGACGCGGAGGAGGCAGAATCCAGAGCTGTCACACTGGCAGTAGGCAC
CTCAGAGGAGGAGGGAAAGGTGAGAAGGAATGAGGAGGTGGAGGAACGAC
GACGACGTCGGTTGAAGATGCTGCAGAGACAACGGGGTGACCGGTCAGCA
GCTGAAACTGGGGTGGATGCTCGAAGGGATGACGGCAGTGTGAGCGAAAG
CAGTAGAAGATACTCCTCGTTGACGAGGAGCAGAAGAGAGCGGGTGTGA back to topCoding sequence (CDS) from alignment at chr13:612516..614414- >NO13G02170.1 ID=NO13G02170.1|Name=NO13G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at chr13:612516..614414- (Nannochloropsis oceanica) ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA ACAGCAGCAACAAGATCAACTGTCACAGCGCTACCGCCCCGATTTGAAAA AGACATACAATAATCAAAAAGCGCGGCAAGGTCGTTTGGCAGATGATTTG CAAGAGACTGTTGCTGAGTTAGAAGCAAAGGTACAGGCCCTGCAAGGAGA GGTGGAGAGTAAGACAGACATGGCTTCCCGTGCCCAATCCTCCCGCGTCG AAGAGCTCAACAACGCCCGCGTCGTCATCGATCAACTGCGGAAAGAAGTA GAGGAAGCGCGAGGAGCGAAAGAGCACATGCAAGGGGAGCTCCGGCAGTA CCAAGTGAGGCTGCAGGCCCTTAAAGATCAAGAAAAAAATGGCAGTGGTA GCTTGTCGGAGGACGACACCCAACGCTTGCGTGCCGATATAGAAGCACAA CTTCGTCAAGAGTATGCCCACAGCCGCGCACAGGAACGAAATGCATGGGC CAAGGAGGTGCGTCATCAGACAGTGGCTGATATTTCGGCCCAGAGCAAGG CGGAACGCAGTAAGTATGAGGCGGACCTGGTGGATCTGTATCGACGACGT CTCAAGGAAGAGGTGGCCAAGCGGGATGTAGTGATGGCGGAGAGGCTGCA TGCCCAAGACATTGAGTACAGAAGGCAGTGTGAGGAGCTCAGGATGAAGG TGCAGGGCCTGTTGCGGGATCGTGACCAGCACATGAAGGAGAAGGTGGCC TTGCACGCACGCGAGTGGCGGGAACGTGTGGGTTCCCCGGGCGCCAACAT GAACAAGGATGTGAAGCAGCAGCAACAGCAGCAACAGCAGCAAAATCCTG CACCACAACCTCATGTTCGCTCTTCCTCCGGAGGAGGTGGTGATGGTGGA CTCTTTCGACGAAAGGGTGCGGCGTCCTCGTCCTCGTTCTCCAAGGTTGT CCGAGGGGGAGGGGGAGGAGTGCGGGGCTCAGCCTCCGATGTTCCCAGTC ACCTTCATTACAGTGAGATCGGGGACGAGGAAGGAGTGGGAGCCGTGCTG ATGGACGCGGAGGAGGCAGAATCCAGAGCTGTCACACTGGCAGTAGGCAC CTCAGAGGAGGAGGGAAAGGTGAGAAGGAATGAGGAGGTGGAGGAACGAC GACGACGTCGGTTGAAGATGCTGCAGAGACAACGGGGTGACCGGTCAGCA GCTGAAACTGGGGTGGATGCTCGAAGGGATGACGGCAGTGTGAGCGAAAG CAGTAGAAGATACTCCTCGTTGACGAGGAGCAGAAGAGAGCGGGTGTGA back to top
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