NO13G02120, NO13G02120 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G02120
Unique Name	NO13G02120
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2934
Alignment location	chr13:602219..605152 -

Link to JBrowse

Properties


Property Name	Value
Description	Peptide chain release factor 3

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:602219..605152 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0016020	membrane
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006415	translational termination
GO:0016043	cellular component organization
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding
GO:0016787	hydrolase activity
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035647	EFG_III/V
IPR027417	P-loop_NTPase
IPR009000	Transl_B-barrel
IPR004548	PrfC
IPR032090	RF3_C
IPR000795	TF_GTP-bd_dom

Homology

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BLAST of NO13G02120 vs. NCBI_GenBank
Match: EWM21881.1 (peptide chain release factor 3 [Nannochloropsis gaditana])

HSP 1 Score: 813.5 bits (2100), Expect = 3.100e-232
Identity = 392/430 (91.16%), Postives = 408/430 (94.88%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKLVPWAFAPDEE 431
            MLVDAGKGLEAQTRKLF VCRLRGLPIYTF NKMDRPAK PV+LVDEIE+EMGLEVVPMVWPIGDGEDFKGVYDRE RVVHLFERQGR EKA     +P+ D  LP LLG  LF QLEEDVELLDALMP+LD+AKVMRGEQTPMFFGSAMSNFGVALFLNKFL+ISEPPAPRETT G IGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRL+GRQVNL+QASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSI+TG KTV+FPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGK+SPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWE+ID+AD EGLIFGAMKCKDRWGRPVLLFRNDWK+NQV DEAPYLKL+PWAFAPDEE
Sbjct:  255 MLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKLIPWAFAPDEE 684

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BLAST of NO13G02120 vs. NCBI_GenBank
Match: CBN78127.1 (PRF3, plastid translation release factor RF3 [Ectocarpus siliculosus])

HSP 1 Score: 561.2 bits (1445), Expect = 2.700e-156
Identity = 258/430 (60.00%), Postives = 343/430 (79.77%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRET-TTGLIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLT-FTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKLVPWAFAPD 429
            MLVDA KGLE QTRKLF VC+LR LPI+TF NK+DRP+ +P +L+D+IE+E G+++ P++WPIGDGE+FKGV DR+T+ VHLFER GRT+KA +  ++ + D +LP+L+   L +QL EDVE+LD L+  LD+ +V+ GEQ+PMFFGSAM+NFGV LFL +FL+I + P+ R      +I P + EFTGFVFKLQANL+P+HRDR+AYVR+ SG++EKGMKV HSR+KG+QV L+ A  LF Q+RET+  AYPGDV+G+NNPG FAIGD+IFTG+  ++FPGIPSFSPE FAY+ NP+  KYK+++KG+D+LL+EGAVQ+L ER+D+G  +PILAAVG LQ +VV +RMK EYGV+T LEPL+ +  ARW+E  WE ID+A + G +FG    +DR+GRPVLLFRN+WK+  V  + P L+L+PW+  PD
Sbjct:  200 MLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEEFKGVLDRDTKTVHLFERAGRTKKATDMPELDLHDPKLPELITEELHEQLLEDVEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPSSRRMGNADVILPGYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMKGKQVTLAHAQQLFAQERETVLAAYPGDVIGINNPGHFAIGDTIFTGSNKIRFPGIPSFSPECFAYMRNPNPSKYKNYRKGLDQLLDEGAVQMLRERSDDGNGNPILAAVGTLQFDVVQHRMKAEYGVDTILEPLSGYNTARWAEGGWESIDEATKAGKLFGVFTAQDRFGRPVLLFRNEWKLANVQGDLPQLELIPWSRPPD 629

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BLAST of NO13G02120 vs. NCBI_GenBank
Match: XP_002180823.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47475.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 526.9 bits (1356), Expect = 5.700e-146
Identity = 256/439 (58.31%), Postives = 324/439 (73.80%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDD-----ARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPR------ETTTGLIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLK-GRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKLVPWAFAP 428
            ML+DA KGLE QTRKLF VCR+R LP++TF NKMDRPA +P +++D+IE E GLE  P++WPIGDG+ FKGV DR T VVHL+++  +        ++P++D     A + D     LF +L ED ELL+ L+  LD+ +VM+GEQ+P+FFGSAM+NFGV LFL+KF S+   P  R      E    +IGP H EFTGF+FK QANL+PKHRDR+AYVR+ SG++EKGMKVSHSR K G++ NL+QA  LFG DR +IE AYPGDV+G+NNPG FAIGD++FTG   V FPGIPSFSPE FAYI +P+   YKSF+KGID+LL+EGAVQ L +RND+G    +LAAVG LQ EVV  R+K EY VE+ +EPL ++ ARW +  WE ++KAD +G +FG M C+DRWGRPVLLFRNDWK   VA+E  YL L PW+  P
Sbjct:  195 MLLDAAKGLEPQTRKLFEVCRMRRLPLFTFCNKMDRPALSPYEIMDQIEDEFGLETHPILWPIGDGDRFKGVLDRTTNVVHLYQKAEKRGGKAGVQEVPLEDTVTLKATIDD---EELFHKLLEDAELLEELINPLDMERVMKGEQSPLFFGSAMTNFGVQLFLDKFCSMGTKPMGRMADTKSENEEEMIGPNHEEFTGFIFKTQANLDPKHRDRLAYVRVVSGRYEKGMKVSHSRSKSGKKYNLAQAQALFGSDRSSIEVAYPGDVIGINNPGNFAIGDTLFTGGARVAFPGIPSFSPEKFAYIRSPNPSDYKSFRKGIDQLLDEGAVQALRQRNDDGGGPLMLAAVGQLQFEVVQARLKNEYNVESIMEPLNYSLARWVDGGWEAVEKADADGKLFGIMICQDRWGRPVLLFRNDWKAASVAEEEKYLDLKPWSTPP 630

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BLAST of NO13G02120 vs. NCBI_GenBank
Match: OSX79647.1 (hypothetical protein BU14_0072s0005 [Porphyra umbilicalis])

HSP 1 Score: 523.9 bits (1348), Expect = 4.800e-145
Identity = 243/433 (56.12%), Postives = 319/433 (73.67%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARW----SEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKLVPWAFAPDE 430
            ML+DA KGLE +TRKLF VCRLR LP  TF NKMDRPA +  ++ D+IE E GL  +P+VWPIGDG+ F+GVY+R T +VHLF R  RT+KA E G +P+DD  + DL G    +QL E++++LD+     D A V  G+ TPMFFGSAM+NFGV LFL +F+ +  PP PRE++ G I P   +F+ F FK+ AN++ KHRDRVA+VR+CSG F KGMKVSHSR+ G+ + L++ + LF  +RET++ AYPGD+VGL NPG FAIGD+++TG   V FPGIP+FSPE+FAYI N   GKYK+F KG+ +LLEEGAVQLLY R DEG++ PILAAVG LQ +VV  R+++EYGV+T+LEPL ++ ARW     +  WE +  A   G +F  +  KDRWGRPVLLF+N W ++Q+A +AP L+L  W+FAPD+
Sbjct:  230 MLIDAAKGLEDRTRKLFEVCRLRKLPTMTFVNKMDRPAMSAFEICDQIEAEFGLACLPIVWPIGDGDRFRGVYERSTGLVHLFTRGDRTDKAGEVGPLPLDDPAVADLCGADALEQLREEIDILDSCGHTYDAAAVAVGDMTPMFFGSAMTNFGVELFLRRFIELGLPPTPRESSVGEIAPAREQFSAFCFKISANMDRKHRDRVAFVRVCSGTFTKGMKVSHSRMPGKTLALTRPTQLFASERETVDVAYPGDIVGLTNPGTFAIGDTVYTGGTRVVFPGIPAFSPELFAYIKNSDTGKYKNFNKGLSQLLEEGAVQLLYPRGDEGQTEPILAAVGALQFDVVQQRLRDEYGVDTKLEPLAYSVARWVVGPGDDPWEALTAA---GRLFNVLYAKDRWGRPVLLFKNSWNLSQLATDAPDLELQSWSFAPDD 659

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BLAST of NO13G02120 vs. NCBI_GenBank
Match: GAX27592.1 (peptide chain release factor 3 [Fistulifera solaris])

HSP 1 Score: 514.2 bits (1323), Expect = 3.800e-142
Identity = 247/429 (57.58%), Postives = 325/429 (75.76%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPA-LFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTG-LIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKLVPWAFAP 428
            ML+DA KGLE QTRKLF VC+LR +P++TF NKMDRPA +P D++D+IE+E GLE  P++WPIGDG+ FKGV DR T  VHL+++  +     E  ++ +DD RL D +G + L+++L ED ELL+ ++P LD+ +VM G+Q+P+FFGSAM+NFGV LFL+ F  +   P  RET+   LI P++ EFTGFVFK QANL+PKHRDR+AYVRI SGK+EKGMKV+HSR K RQ NL+QA  LFG DR +++EA+PGDV+G+NNPG FAIGD++++G   + FPGIPSFSPE FAYI  P+   YKSFKKGID+LL EGAVQ L +RNDE     +LAAVG LQ EVV  R+  EY V++++EPL ++ ARW +  WE ++KAD++G +FG M  +D+W RPVLLFRNDWK   +A+E  YL+L PW+  P
Sbjct:  155 MLMDAAKGLEPQTRKLFEVCQLRSIPLFTFVNKMDRPALSPYDIMDQIEQEFGLEPHPILWPIGDGDRFKGVLDRTTNTVHLYQKAEKRGAKAEATEVALDDERLADWIGDSELYEKLMEDAELLNEMIPPLDMERVMIGKQSPLFFGSAMTNFGVQLFLDHFCRMGTEPLGRETSKDILITPDYGEFTGFVFKTQANLDPKHRDRLAYVRIVSGKYEKGMKVNHSRSK-RQYNLAQAQALFGSDRTSVDEAFPGDVIGINNPGSFAIGDTLYSGNSPIAFPGIPSFSPEKFAYIRAPNPSDYKSFKKGIDQLLAEGAVQALRQRNDE-NGPLLLAAVGQLQFEVVQARLLSEYKVDSKMEPLGYSLARWVDGGWEAVEKADKDGKLFGIMIVQDQWKRPVLLFRNDWKAASLAEEEKYLQLKPWSAPP 581

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BLAST of NO13G02120 vs. NCBI_GenBank
Match: GAX27131.1 (peptide chain release factor 3 [Fistulifera solaris])

HSP 1 Score: 514.2 bits (1323), Expect = 3.800e-142
Identity = 247/429 (57.58%), Postives = 325/429 (75.76%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPA-LFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTG-LIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKLVPWAFAP 428
            ML+DA KGLE QTRKLF VC+LR +P++TF NKMDRPA +P D++D+IE+E GLE  P++WPIGDG+ FKGV DR T  VHL+++  +     E  ++ +DD +L DL+G + L+ +L ED ELL+ ++P LD+ +VM G+Q+P+FFGSAM+NFGV LFL+ F  +   P  RET+   LI P++ EFTGFVFK QANL+PKHRDR+AYVRI SGK+EKGMKV+HSR K RQ NL+QA  LFG DR +++EA+PGDV+G+NNPG FAIGD++++G   + FPGIPSFSPE FAYI  P+   YKSFKKGID+LL EGAVQ L +RNDE     +LAAVG LQ EVV  R+  EY V++++EPL ++ ARW +  WE ++KAD++G +FG M  +D+W RPVLLFRNDWK   +A+E  YL+L PW+  P
Sbjct:  156 MLMDAAKGLEPQTRKLFEVCQLRSIPLFTFVNKMDRPALSPYDIMDQIEQEFGLEPHPILWPIGDGDRFKGVLDRTTNTVHLYQKAEKRGAKAEATEVALDDEQLKDLIGDSELYDKLMEDAELLNEMIPPLDMERVMIGKQSPLFFGSAMTNFGVQLFLDHFCRMGTEPLGRETSKDILITPDYGEFTGFVFKTQANLDPKHRDRLAYVRIVSGKYEKGMKVNHSRSK-RQYNLAQAQALFGSDRTSVDEAFPGDVIGINNPGSFAIGDTLYSGNSPIAFPGIPSFSPEKFAYIRAPNPSDYKSFKKGIDQLLAEGAVQALRQRNDE-NGPLLLAAVGQLQFEVVQARLLSEYKVDSKMEPLGYSLARWVDGGWEAVEKADKDGKLFGIMIVQDQWKRPVLLFRNDWKAASLAEEEKYLQLKPWSAPP 582

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BLAST of NO13G02120 vs. NCBI_GenBank
Match: WP_106255796.1 (peptide chain release factor 3 [Leptolyngbya frigida] >PSB30767.1 peptide chain release factor 3 [Leptolyngbya frigida ULC18])

HSP 1 Score: 500.4 bits (1287), Expect = 5.700e-138
Identity = 238/420 (56.67%), Postives = 312/420 (74.29%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKL 421
            ML+DA KGLE QTRKLF VCR+RGLPI+TF NK+DRP + P+DL+DEIE+E+GL+   + WPIG G+ FKGVYDR ++ VHLFER    ++      + + D R+  LL  +L+ Q ++D+EL++ L P LD+  V RG+ TP+FFGSAM+NFGV LFL+ FL  +  P P  ++ G I P +PEF+GFVFKLQAN++PKHRDR+A+VR+CSG+FEK M VSH+R  G+ V LS+   LF QDRE IEEAYPGDV+GLNNPG+FAIGD+I+ G+K +++ GIP FSPE+FAY+ NP+  K+K F+KG+ EL EEGAVQ++Y   DE K  PILAAVG LQ EVV +RM+ EYGVET+LE L ++ ARW +  W+ + K    G +F  +  KD W RPVLLFRN+W MNQV  + P L+L
Sbjct:  114 MLIDAAKGLEPQTRKLFEVCRMRGLPIFTFINKLDRPGREPLDLLDEIEQELGLQTYAVNWPIGMGDRFKGVYDRRSQQVHLFERSAHGQREAIDTAVDLGDPRIEQLLEQSLYYQFKDDLELIEGLGPELDLDLVHRGKMTPVFFGSAMTNFGVELFLDAFLDYALKPGPHASSKGEIQPTYPEFSGFVFKLQANMDPKHRDRIAFVRVCSGRFEKDMTVSHAR-SGKTVRLSRPQKLFAQDREVIEEAYPGDVIGLNNPGVFAIGDTIYVGSK-LEYEGIPCFSPEIFAYLKNPNPSKFKQFRKGVSELQEEGAVQIMYSA-DEAKRDPILAAVGQLQFEVVQFRMQNEYGVETQLELLPYSVARWVDGGWDALQKV---GRLFNTVTAKDAWNRPVLLFRNEWNMNQVQADHPELQL 527

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BLAST of NO13G02120 vs. NCBI_GenBank
Match: WP_015161828.1 (peptide chain release factor 3 [Chamaesiphon minutus] >AFY95738.1 peptide chain release factor 3 [Chamaesiphon minutus PCC 6605])

HSP 1 Score: 496.5 bits (1277), Expect = 8.300e-137
Identity = 237/420 (56.43%), Postives = 305/420 (72.62%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKL 421
            ML+DA KGLE QTRKLF VC+LR LPI+TF NK+DRP + P++L+DEIE+E+GL+   + WPIG G+ FKGV+DR  + VHLFER     +      M + D RL  +L   LF QL  D+ELLD +   LD+  +  G  TP+FFGSAM+NFGV LFL+ FL  +  P  R +  G I P +PEF+GFVFKLQAN++PKHRDRVA++R+C+GKFEK M VSH+R  G+ V LS+   LF QDRE+IEEAYPGDV+GLNNPG+FAIGD+I+TG K +++ GIP FSPE+FA++ NP+  K+K F+KG+ EL EEGAVQ++Y   DE K  PILAAVG LQ EVV +RMK EYGVET LEPL ++ ARW    W+ +DK    G +F  +  KD W RPVLLF+N+W +NQ+ ++ P LKL
Sbjct:  118 MLIDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPGREPLELLDEIEQELGLQTYAVNWPIGTGDRFKGVFDRHQQKVHLFERTAHGSREATDTVMDLHDPRLKQILDKELFDQLHSDLELLDGVASELDLEAIHAGYMTPVFFGSAMTNFGVELFLHYFLEYALKPGNRNSNVGSIDPSYPEFSGFVFKLQANMDPKHRDRVAFIRVCTGKFEKDMTVSHAR-TGKTVRLSRPQKLFAQDRESIEEAYPGDVIGLNNPGVFAIGDTIYTGMKKLEYEGIPCFSPELFAFLRNPNPSKFKQFQKGVKELQEEGAVQIMYSA-DEAKRDPILAAVGQLQFEVVQFRMKNEYGVETTLEPLGYSVARWVLNGWDALDKV---GRLFNTLVIKDLWNRPVLLFKNEWNVNQLIEDHPSLKL 532

[Close]

BLAST of NO13G02120 vs. NCBI_GenBank
Match: WP_106303297.1 (peptide chain release factor 3 [Chamaesiphon polymorphus] >PSB57150.1 peptide chain release factor 3 [Chamaesiphon polymorphus CCALA 037])

HSP 1 Score: 496.1 bits (1276), Expect = 1.100e-136
Identity = 237/420 (56.43%), Postives = 305/420 (72.62%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKL 421
            ML+DA KGLE QTRKLF VC+LR LPI+TF NK+DRP + P++L+DEIE+E+GL+   + WPIG G+ FKGV+DR  + VHLFER     +      M + D RL  +L   LF QL  D+ELLD +   LD+  +  G  TP+FFGSAM+NFGV LFL+ FL  +  P  R +  G I P +PEF+GFVFKLQAN++PKHRDRVA++R+C+GKFEK M VSH+R  G+ V LS+   LF QDRE+IEEAYPGDV+GLNNPG+FAIGD+I+TG K +++ GIP FSPE+FA++ NP+  K+K F+KG+ EL EEGAVQ++Y   DE K  PILAAVG LQ EVV +RMK EYGVET LEPL ++ ARW    W+ +DK    G +F  +  KD W RPVLLF+N+W +NQ+ ++ P LKL
Sbjct:  118 MLIDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPGREPLELLDEIEQELGLQTYAVNWPIGTGDRFKGVFDRHQQKVHLFERTAHGSREATDTVMDLHDPRLKQILDKELFDQLHSDLELLDGVASELDLEAIHAGYMTPVFFGSAMTNFGVELFLHYFLEYALKPGNRNSNVGSIDPSYPEFSGFVFKLQANMDPKHRDRVAFIRVCTGKFEKDMTVSHAR-TGKTVRLSRPQKLFAQDRESIEEAYPGDVIGLNNPGVFAIGDTIYTGMKKLEYEGIPCFSPELFAFLRNPNPSKFKQFQKGVKELQEEGAVQIMYSA-DEAKRDPILAAVGQLQFEVVMFRMKNEYGVETTLEPLGYSVARWVLNGWDALDKV---GRLFNTLVIKDLWNRPVLLFKNEWNVNQLLEDHPSLKL 532

[Close]

BLAST of NO13G02120 vs. NCBI_GenBank
Match: WP_015226180.1 (peptide chain release factor 3 [Halothece sp. PCC 7418] >AFZ44305.1 bacterial peptide chain release factor 3 (bRF-3) [Halothece sp. PCC 7418])

HSP 1 Score: 495.7 bits (1275), Expect = 1.400e-136
Identity = 229/420 (54.52%), Postives = 313/420 (74.52%), Query Frame = 0

Query:    1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKL 421
            ML+DA KGLE QTRKLF VCR+R LPI+TFANKMDRP++ P++L+DEIE+E+GL+   + WPIG G+ FKGVYDR ++ +HLF+R        ET  + + D ++ ++L   L+ QL++++E+++ + P  D+ ++  GE TPMFFGSAM+NFGV LFL+ FL  ++PP   +++ G + P +P+FTGFVFKLQAN++PKHRDRVA+VR+C+GKFEK M V+H+R  G+ V LS+   LF QDR++I+EAYPGDV+GLNNPG+FAIGD+++ G K V + GIP FSPE+FAY+ NP+  K+K F KG+ EL EEGA+Q++Y + DE K  PILAAVG LQ+EVV YRM+ EYGVET LE L +  ARW    WE ++KA   G +F  +  KD W RPVLLF+N W ++Q+  + P LKL
Sbjct:  115 MLIDAAKGLEPQTRKLFEVCRMRSLPIFTFANKMDRPSREPLELIDEIEQELGLQTYAVNWPIGMGDRFKGVYDRRSQQIHLFQRTAHGSTQAETTVISLGDPKIEEILDQDLYFQLKDEIEIIEEVAPDFDLERIHNGELTPMFFGSAMTNFGVQLFLDAFLEYAQPPEAHQSSRGEMNPTYPDFTGFVFKLQANMDPKHRDRVAFVRVCTGKFEKDMSVNHAR-TGKSVRLSRPQKLFAQDRDSIDEAYPGDVIGLNNPGMFAIGDTVYAGKKVV-YEGIPCFSPELFAYLKNPNPSKFKQFHKGVTELREEGAIQIMYSK-DESKRDPILAAVGQLQIEVVQYRMENEYGVETSLEMLPYKVARWVTGGWEALEKA---GRLFNTVTVKDIWERPVLLFKNQWNLDQIQGDHPELKL 528

The following BLAST results are available for this feature:

BLAST of NO13G02120 vs. NCBI_GenBank

BLAST of NO13G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21881.1	3.100e-232	91.16	peptide chain release factor 3 [Nannochloropsis ga...	[more]
CBN78127.1	2.700e-156	60.00	PRF3, plastid translation release factor RF3 [Ecto...	[more]
XP_002180823.1	5.700e-146	58.31	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
OSX79647.1	4.800e-145	56.12	hypothetical protein BU14_0072s0005 [Porphyra umbi...	[more]
GAX27592.1	3.800e-142	57.58	peptide chain release factor 3 [Fistulifera solari...	[more]
GAX27131.1	3.800e-142	57.58	peptide chain release factor 3 [Fistulifera solari...	[more]
WP_106255796.1	5.700e-138	56.67	peptide chain release factor 3 [Leptolyngbya frigi...	[more]
WP_015161828.1	8.300e-137	56.43	peptide chain release factor 3 [Chamaesiphon minut...	[more]
WP_106303297.1	1.100e-136	56.43	peptide chain release factor 3 [Chamaesiphon polym...	[more]
WP_015226180.1	1.400e-136	54.52	peptide chain release factor 3 [Halothece sp. PCC ...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL135	nonsL135	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL134	nonsL134	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL131	nonsL131	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR026	ncniR026	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR071	ngnoR071	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR070	ngnoR070	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR069	ngnoR069	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001683	NSK001683	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO13G02120.3	NO13G02120.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO13G02120.2	NO13G02120.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO13G02120.1	NO13G02120.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557738	gene_6799	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
PRF3	gene8557	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO13G02120.3	NO13G02120.3	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO13G02120.2	NO13G02120.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO13G02120.1	NO13G02120.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence
protein sequence

gene sequence

>NO13G02120 ID=NO13G02120|Name=NO13G02120|organism=Nannochloropsis oceanica|type=gene|length=2934bp
TACAACGTTCATGGTTTTGGCTGTGAGATATATGATACATAGGTGTTGTC
GGGTAAGGAAAGTGAGACGCTGCTTTCTTCCTTTGCGCCATGGTGGGCGC
ACGGTCGATGAAAGAGTCCAGATGGACGAGCTTGTGAAGGCCTCAGTCTT
ACGCTGCTTTTCTCCTAGACCTAAGAGATGTCATGTCTGTGTGGTATGGT
CTGGCCATTGATCTAGTCAGAGTCAGGCATGCACGCGACATGGAAAGCAG
AGGAGAACCAGCCACAGGATGATATAGAATGAGCCTCAGGAGCTGGCCTT
GTTTCGCAGAATCCTAAACACGTCCTTGCTGGCCATGTCCATGCAATACC
GCAATCGCATTCTCACCCCCTAGATAGCTGCTCGCTTACTTTTTGTCTCG
CAATCTTCCTCCATTCCAGGTGCTCCAGGCCCGCGGACGGCCCGACATCA
CCCTCCGCTCTATATTTCGACCTCCCCGACGCACCCTGGGGAACAGCAAC
AGGAGGCCCCTAGGAAACCCATGGCACAACAAGGCCACTACCCCATCTCC
GTGCTGATGCTCCTCGTGATATTGTCATGCTATTGTGTGCAGGGCTTCAT
TCCATTTAGAACTGCTCCTATCTCGCTGTCCCGGTCGCGGCACTCCCATG
CTTCCGAAACCTTGGAGAAAGAGGCCCCGACGCATGCCTTCGAAATAGAC
Ggtgtgtagcatgtgcggctggcactttggtgtcctttgccagcaagtat
gaatatcccctccattctgacacagGTATAACCAGGACAGTACAAGCGAC
TCAAAGCAAAATCCTCGAGCGCCGAACCTTTGCCATTATCTCCCACCCCG
ATTCGGGCAAGACGAgtacgtacgcagcttgaccatgacaggggagatat
gtatagcatttcgagcacacttatgcgtgttcgattcttctctgaaggat
atgaatgatagtctgctcgcgtcctagcgtatgatatgtgatgcgtgagc
ttcgccctttgaaggatctaggggcagacaatctcactcttactgtaccc
acaaatcaccatctcatttttttccatcgcttcgaacaaaaacagCTTTG
ACCGAAAAGCTCCTACTGTACGGTGGGGCTATTAATGAAGCCGGTGCCGT
CCGTTCCCGGGCCTCACAAAGGAAAACCCAGTCAGACTTCATGGAGATGG
AGAAGCAGCGTGGGATTTCCATCAGTTCTACTGTGATGACTTTTGATGTA
TGCCATCTGTGATTGATGGTCGGAGAAGTGGGAGAGGGTTTATTGGATTG
GGTTTATGATTAGGATTTTGAACGTTCTCTTCGCTCTTAGCCGCAGTCCT
CTGACAAGTTGATCATTAGTCTTCCTGTTGCAGTTTCTATTCCCACCTAA
CCGAAGGCGTTTCTTCACACAACTTCTCCTTCTCTTTTCCTCCCCTCATT
CGAAAATAGTACTCCGGCTTTCAAATCAATCTCCTCGACACTCCAGGCCA
CGCCGACTTTGGGGAAGACACGTATCGTACTCTCTCTGCCGCAGACAACG
CCCTGATGCTCGTCGATGCCGGAAAAGGGCTGGAGGCACAAACGAGGAAA
CTTTTTACCGTCTGCCGGTTGCGGGGACTGCCCATTTATACATTTGCAAA
TAAGATGGACAGGCCGGCCAAGAACCCGGTGGACCTGGTGGATGAGATTG
AGAAGGAGATGGGTTTGGAGGTCGTGCCCATGGTTTGGCCGATTGGGGAT
GGGGAGGATTTCAAGGGCGTGTATGATAGAGAGACCAGGGTGGTACATCT
GTTTGAGCGGCAAGGACGCACGGAGAAGGCCGTAGAGACGGGACAGATGC
CAGTGGATGATGCGAGGCTACCTGATTTGTTGGGTCCTGCTTTGTTTAAG
CAACTGGAGGAGGACGTTGAGCTGTTGGATGCGTTGATGCCTGCGTTGGA
CATTGCCAAGGTGATGCGGGGTGAGCAGACGCCGATGTTTTTTGGTTCGG
CCATGTCGAATTTCGGGGTGGCGTTGTTTTTAAACAAGTTTTTGTCGATA
TCGGAGCCACCGGCGCCGAGGGAGACGACCACAGGGTTGATCGGACCGGA
GCATCCAGAGTTCACTGGATTTGTGTTCAAGCTGCAGGCGAATTTGAATC
CGAAACATCGGGACAGGGTGGCGTATGTGAGGATTTGCTCTGGGAAATTC
GAGAAGGGAATGAAAGTCTCTCATTCGCGGCTGAAAGGGCGGCAAGTGAA
CTTGTCACAAGCGTCGATGTTGTTTGGGCAAGACCGAGAGACGATTGAGG
AGGCGTATCCTGGGGATGTGGTGGGATTGAACAATCCGGGACTGTTTGCT
ATTGGTGACTCTATTTTTACGGGGGCGAAGACGGTGAAGTTCCCGGGCAT
TCCCTCTTTTTCGCCCGAGGTGTTTGCGTATATTTTCAACCCATCTGCAG
GAAAATATAAAAGTTTTAAGAAGGGTATTGATGAATTGTTGGAAGAGGGT
GCCGTGCAGTTGCTTTATGAGCGAAATGATGAAGGAAAATCGTCTCCTAT
CTTGGCAGCTGTGGGGCCATTGCAGCTCGAGGTGGTGTCGTATCGAATGA
AGGAGGAATATGGGGTGGAGACACGACTAGAGCCATTGACGTTCACGGCG
GCTCGGTGGTCGGAAGCGACGTGGGAGGAGATTGATAAGGCTGACGAGGA
GGGGTTGATTTTTGGGGCGATGAAATGTAAAGATCGATGGGGGAGGCCAG
TGCTTCTTTTTAGGAATGATTGGAAGATGAACCAAGTGGCGGATGAGGCT
CCATATTTGAAGTTGGTGCCTTGGGCATTTGCACCTGATGAAGAGTAGTT
GAAAGCACAGGGGTTCAAGGTGAAAGGTGGGGAAGAGTATTTGACAAATG
TTAACAAATGTTCACGGCAATAAATTTATGGCGG

protein sequence of NO13G02120.3

>NO13G02120.3-protein ID=NO13G02120.3-protein|Name=NO13G02120.3|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEK
EMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPV
DDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAM
SNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPK
HRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEA
YPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGK
YKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKE
EYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVL
LFRNDWKMNQVADEAPYLKLVPWAFAPDEE*

protein sequence of NO13G02120.2

>NO13G02120.2-protein ID=NO13G02120.2-protein|Name=NO13G02120.2|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEK
EMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPV
DDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAM
SNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPK
HRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEA
YPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGK
YKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKE
EYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVL
LFRNDWKMNQVADEAPYLKLVPWAFAPDEE*

protein sequence of NO13G02120.1

>NO13G02120.1-protein ID=NO13G02120.1-protein|Name=NO13G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MAQQGHYPISVLMLLVILSCYCVQGFIPFRTAPISLSRSRHSHASETLEK
EAPTHAFEIDGITRTVQATQSKILERRTFAIISHPDSGKTTLTEKLLLYG
GAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVMTFDYSGFQINLL
DTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFTVCRLRGLPI
YTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRET
RVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPALFKQLEEDVELLDAL
MPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTG
LIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLK
GRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTV
KFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEG
KSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEID
KADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKLVPWAFAP
DEE*

Synonyms

Publications