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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr13 | genome | chr13:602219..605152 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02120.3 vs.
Match: EWM21881.1 (peptide chain release factor 3 [Nannochloropsis gaditana]) HSP 1 Score: 813.5 bits (2100), Expect = 3.100e-232 Identity = 392/430 (91.16%), Postives = 408/430 (94.88%), Query Frame = 0
Query: 1 MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEKEMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPVDDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAMSNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVLLFRNDWKMNQVADEAPYLKLVPWAFAPDEE 431
MLVDAGKGLEAQTRKLF VCRLRGLPIYTF NKMDRPAK PV+LVDEIE+EMGLEVVPMVWPIGDGEDFKGVYDRE RVVHLFERQGR EKA +P+ D LP LLG LF QLEEDVELLDALMP+LD+AKVMRGEQTPMFFGSAMSNFGVALFLNKFL+ISEPPAPRETT G IGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRL+GRQVNL+QASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSI+TG KTV+FPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGK+SPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWE+ID+AD EGLIFGAMKCKDRWGRPVLLFRNDWK+NQV DEAPYLKL+PWAFAPDEE
Sbjct: 255 MLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKLIPWAFAPDEE 684
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02120.3 ID=NO13G02120.3|Name=NO13G02120.3|organism=Nannochloropsis oceanica|type=mRNA|length=2704bp
TACAACGTTCATGGTTTTGGCTGTGAGATATATGATACATAGGTGTTGTC
GGGTAAGGAAAGTGAGACGCTGCTTTCTTCCTTTGCGCCATGGTGGGCGC
ACGGTCGATGAAAGAGTCCAGATGGACGAGCTTGTGAAGGCCTCAGTCTT
ACGCTGCTTTTCTCCTAGACCTAAGAGATGTCATGTCTGTGTGGTATGGT
CTGGCCATTGATCTAGTCAGAGTCAGGCATGCACGCGACATGGAAAGCAG
AGGAGAACCAGCCACAGGATGATATAGAATGAGCCTCAGGAGCTGGCCTT
GTTTCGCAGAATCCTAAACACGTCCTTGCTGGCCATGTCCATGCAATACC
GCAATCGCATTCTCACCCCCTAGATAGCTGCTCGCTTACTTTTTGTCTCG
CAATCTTCCTCCATTCCAGGTGCTCCAGGCCCGCGGACGGCCCGACATCA
CCCTCCGCTCTATATTTCGACCTCCCCGACGCACCCTGGGGAACAGCAAC
AGGAGGCCCCTAGGAAACCCATGGCACAACAAGGCCACTACCCCATCTCC
GTGCTGATGCTCCTCGTGATATTGTCATGCTATTGTGTGCAGGGCTTCAT
TCCATTTAGAACTGCTCCTATCTCGCTGTCCCGGTCGCGGCACTCCCATG
CTTCCGAAACCTTGGAGAAAGAGGCCCCGACGCATGCCTTCGAAATAGAC
GGTGTGTAGCATGTGCGGCTGGCACTTTGGTGTCCTTTGCCAGCAAGTAT
GAATATCCCCTCCATTCTGACACAGGTATAACCAGGACAGTACAAGCGAC
TCAAAGCAAAATCCTCGAGCGCCGAACCTTTGCCATTATCTCCCACCCCG
ATTCGGGCAAGACGACTTTGACCGAAAAGCTCCTACTGTACGGTGGGGCT
ATTAATGAAGCCGGTGCCGTCCGTTCCCGGGCCTCACAAAGGAAAACCCA
GTCAGACTTCATGGAGATGGAGAAGCAGCGTGGGATTTCCATCAGTTCTA
CTGTGATGACTTTTGATGTATGCCATCTGTGATTGATGGTCGGAGAAGTG
GGAGAGGGTTTATTGGATTGGGTTTATGATTAGGATTTTGAACGTTCTCT
TCGCTCTTAGCCGCAGTCCTCTGACAAGTTGATCATTAGTCTTCCTGTTG
CAGTTTCTATTCCCACCTAACCGAAGGCGTTTCTTCACACAACTTCTCCT
TCTCTTTTCCTCCCCTCATTCGAAAATAGTACTCCGGCTTTCAAATCAAT
CTCCTCGACACTCCAGGCCACGCCGACTTTGGGGAAGACACGTATCGTAC
TCTCTCTGCCGCAGACAACGCCCTGATGCTCGTCGATGCCGGAAAAGGGC
TGGAGGCACAAACGAGGAAACTTTTTACCGTCTGCCGGTTGCGGGGACTG
CCCATTTATACATTTGCAAATAAGATGGACAGGCCGGCCAAGAACCCGGT
GGACCTGGTGGATGAGATTGAGAAGGAGATGGGTTTGGAGGTCGTGCCCA
TGGTTTGGCCGATTGGGGATGGGGAGGATTTCAAGGGCGTGTATGATAGA
GAGACCAGGGTGGTACATCTGTTTGAGCGGCAAGGACGCACGGAGAAGGC
CGTAGAGACGGGACAGATGCCAGTGGATGATGCGAGGCTACCTGATTTGT
TGGGTCCTGCTTTGTTTAAGCAACTGGAGGAGGACGTTGAGCTGTTGGAT
GCGTTGATGCCTGCGTTGGACATTGCCAAGGTGATGCGGGGTGAGCAGAC
GCCGATGTTTTTTGGTTCGGCCATGTCGAATTTCGGGGTGGCGTTGTTTT
TAAACAAGTTTTTGTCGATATCGGAGCCACCGGCGCCGAGGGAGACGACC
ACAGGGTTGATCGGACCGGAGCATCCAGAGTTCACTGGATTTGTGTTCAA
GCTGCAGGCGAATTTGAATCCGAAACATCGGGACAGGGTGGCGTATGTGA
GGATTTGCTCTGGGAAATTCGAGAAGGGAATGAAAGTCTCTCATTCGCGG
CTGAAAGGGCGGCAAGTGAACTTGTCACAAGCGTCGATGTTGTTTGGGCA
AGACCGAGAGACGATTGAGGAGGCGTATCCTGGGGATGTGGTGGGATTGA
ACAATCCGGGACTGTTTGCTATTGGTGACTCTATTTTTACGGGGGCGAAG
ACGGTGAAGTTCCCGGGCATTCCCTCTTTTTCGCCCGAGGTGTTTGCGTA
TATTTTCAACCCATCTGCAGGAAAATATAAAAGTTTTAAGAAGGGTATTG
ATGAATTGTTGGAAGAGGGTGCCGTGCAGTTGCTTTATGAGCGAAATGAT
GAAGGAAAATCGTCTCCTATCTTGGCAGCTGTGGGGCCATTGCAGCTCGA
GGTGGTGTCGTATCGAATGAAGGAGGAATATGGGGTGGAGACACGACTAG
AGCCATTGACGTTCACGGCGGCTCGGTGGTCGGAAGCGACGTGGGAGGAG
ATTGATAAGGCTGACGAGGAGGGGTTGATTTTTGGGGCGATGAAATGTAA
AGATCGATGGGGGAGGCCAGTGCTTCTTTTTAGGAATGATTGGAAGATGA
ACCAAGTGGCGGATGAGGCTCCATATTTGAAGTTGGTGCCTTGGGCATTT
GCACCTGATGAAGAGTAGTTGAAAGCACAGGGGTTCAAGGTGAAAGGTGG
GGAAGAGTATTTGACAAATGTTAACAAATGTTCACGGCAATAAATTTATG
GCGG back to topprotein sequence of NO13G02120.3 >NO13G02120.3-protein ID=NO13G02120.3-protein|Name=NO13G02120.3|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MLVDAGKGLEAQTRKLFTVCRLRGLPIYTFANKMDRPAKNPVDLVDEIEK
EMGLEVVPMVWPIGDGEDFKGVYDRETRVVHLFERQGRTEKAVETGQMPV
DDARLPDLLGPALFKQLEEDVELLDALMPALDIAKVMRGEQTPMFFGSAM
SNFGVALFLNKFLSISEPPAPRETTTGLIGPEHPEFTGFVFKLQANLNPK
HRDRVAYVRICSGKFEKGMKVSHSRLKGRQVNLSQASMLFGQDRETIEEA
YPGDVVGLNNPGLFAIGDSIFTGAKTVKFPGIPSFSPEVFAYIFNPSAGK
YKSFKKGIDELLEEGAVQLLYERNDEGKSSPILAAVGPLQLEVVSYRMKE
EYGVETRLEPLTFTAARWSEATWEEIDKADEEGLIFGAMKCKDRWGRPVL
LFRNDWKMNQVADEAPYLKLVPWAFAPDEE* back to topmRNA from alignment at chr13:602219..605152- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02120.3 ID=NO13G02120.3|Name=NO13G02120.3|organism=Nannochloropsis oceanica|type=mRNA|length=2934bp|location=Sequence derived from alignment at chr13:602219..605152- (Nannochloropsis oceanica)
TACAACGTTCATGGTTTTGGCTGTGAGATATATGATACATAGGTGTTGTC
GGGTAAGGAAAGTGAGACGCTGCTTTCTTCCTTTGCGCCATGGTGGGCGC
ACGGTCGATGAAAGAGTCCAGATGGACGAGCTTGTGAAGGCCTCAGTCTT
ACGCTGCTTTTCTCCTAGACCTAAGAGATGTCATGTCTGTGTGGTATGGT
CTGGCCATTGATCTAGTCAGAGTCAGGCATGCACGCGACATGGAAAGCAG
AGGAGAACCAGCCACAGGATGATATAGAATGAGCCTCAGGAGCTGGCCTT
GTTTCGCAGAATCCTAAACACGTCCTTGCTGGCCATGTCCATGCAATACC
GCAATCGCATTCTCACCCCCTAGATAGCTGCTCGCTTACTTTTTGTCTCG
CAATCTTCCTCCATTCCAGGTGCTCCAGGCCCGCGGACGGCCCGACATCA
CCCTCCGCTCTATATTTCGACCTCCCCGACGCACCCTGGGGAACAGCAAC
AGGAGGCCCCTAGGAAACCCATGGCACAACAAGGCCACTACCCCATCTCC
GTGCTGATGCTCCTCGTGATATTGTCATGCTATTGTGTGCAGGGCTTCAT
TCCATTTAGAACTGCTCCTATCTCGCTGTCCCGGTCGCGGCACTCCCATG
CTTCCGAAACCTTGGAGAAAGAGGCCCCGACGCATGCCTTCGAAATAGAC
GGTGTGTAGCATGTGCGGCTGGCACTTTGGTGTCCTTTGCCAGCAAGTAT
GAATATCCCCTCCATTCTGACACAGGTATAACCAGGACAGTACAAGCGAC
TCAAAGCAAAATCCTCGAGCGCCGAACCTTTGCCATTATCTCCCACCCCG
ATTCGGGCAAGACGAGTACGTACGCAGCTTGACCATGACAGGGGAGATAT
GTATAGCATTTCGAGCACACTTATGCGTGTTCGATTCTTCTCTGAAGGAT
ATGAATGATAGTCTGCTCGCGTCCTAGCGTATGATATGTGATGCGTGAGC
TTCGCCCTTTGAAGGATCTAGGGGCAGACAATCTCACTCTTACTGTACCC
ACAAATCACCATCTCATTTTTTTCCATCGCTTCGAACAAAAACAGCTTTG
ACCGAAAAGCTCCTACTGTACGGTGGGGCTATTAATGAAGCCGGTGCCGT
CCGTTCCCGGGCCTCACAAAGGAAAACCCAGTCAGACTTCATGGAGATGG
AGAAGCAGCGTGGGATTTCCATCAGTTCTACTGTGATGACTTTTGATGTA
TGCCATCTGTGATTGATGGTCGGAGAAGTGGGAGAGGGTTTATTGGATTG
GGTTTATGATTAGGATTTTGAACGTTCTCTTCGCTCTTAGCCGCAGTCCT
CTGACAAGTTGATCATTAGTCTTCCTGTTGCAGTTTCTATTCCCACCTAA
CCGAAGGCGTTTCTTCACACAACTTCTCCTTCTCTTTTCCTCCCCTCATT
CGAAAATAGTACTCCGGCTTTCAAATCAATCTCCTCGACACTCCAGGCCA
CGCCGACTTTGGGGAAGACACGTATCGTACTCTCTCTGCCGCAGACAACG
CCCTGATGCTCGTCGATGCCGGAAAAGGGCTGGAGGCACAAACGAGGAAA
CTTTTTACCGTCTGCCGGTTGCGGGGACTGCCCATTTATACATTTGCAAA
TAAGATGGACAGGCCGGCCAAGAACCCGGTGGACCTGGTGGATGAGATTG
AGAAGGAGATGGGTTTGGAGGTCGTGCCCATGGTTTGGCCGATTGGGGAT
GGGGAGGATTTCAAGGGCGTGTATGATAGAGAGACCAGGGTGGTACATCT
GTTTGAGCGGCAAGGACGCACGGAGAAGGCCGTAGAGACGGGACAGATGC
CAGTGGATGATGCGAGGCTACCTGATTTGTTGGGTCCTGCTTTGTTTAAG
CAACTGGAGGAGGACGTTGAGCTGTTGGATGCGTTGATGCCTGCGTTGGA
CATTGCCAAGGTGATGCGGGGTGAGCAGACGCCGATGTTTTTTGGTTCGG
CCATGTCGAATTTCGGGGTGGCGTTGTTTTTAAACAAGTTTTTGTCGATA
TCGGAGCCACCGGCGCCGAGGGAGACGACCACAGGGTTGATCGGACCGGA
GCATCCAGAGTTCACTGGATTTGTGTTCAAGCTGCAGGCGAATTTGAATC
CGAAACATCGGGACAGGGTGGCGTATGTGAGGATTTGCTCTGGGAAATTC
GAGAAGGGAATGAAAGTCTCTCATTCGCGGCTGAAAGGGCGGCAAGTGAA
CTTGTCACAAGCGTCGATGTTGTTTGGGCAAGACCGAGAGACGATTGAGG
AGGCGTATCCTGGGGATGTGGTGGGATTGAACAATCCGGGACTGTTTGCT
ATTGGTGACTCTATTTTTACGGGGGCGAAGACGGTGAAGTTCCCGGGCAT
TCCCTCTTTTTCGCCCGAGGTGTTTGCGTATATTTTCAACCCATCTGCAG
GAAAATATAAAAGTTTTAAGAAGGGTATTGATGAATTGTTGGAAGAGGGT
GCCGTGCAGTTGCTTTATGAGCGAAATGATGAAGGAAAATCGTCTCCTAT
CTTGGCAGCTGTGGGGCCATTGCAGCTCGAGGTGGTGTCGTATCGAATGA
AGGAGGAATATGGGGTGGAGACACGACTAGAGCCATTGACGTTCACGGCG
GCTCGGTGGTCGGAAGCGACGTGGGAGGAGATTGATAAGGCTGACGAGGA
GGGGTTGATTTTTGGGGCGATGAAATGTAAAGATCGATGGGGGAGGCCAG
TGCTTCTTTTTAGGAATGATTGGAAGATGAACCAAGTGGCGGATGAGGCT
CCATATTTGAAGTTGGTGCCTTGGGCATTTGCACCTGATGAAGAGTAGTT
GAAAGCACAGGGGTTCAAGGTGAAAGGTGGGGAAGAGTATTTGACAAATG
TTAACAAATGTTCACGGCAATAAATTTATGGCGG back to topCoding sequence (CDS) from alignment at chr13:602219..605152- >NO13G02120.3 ID=NO13G02120.3|Name=NO13G02120.3|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at chr13:602219..605152- (Nannochloropsis oceanica)
ATGCTCGTCGATGCCGGAAAAGGGCTGGAGGCACAAACGAGGAAACTTTT
TACCGTCTGCCGGTTGCGGGGACTGCCCATTTATACATTTGCAAATAAGA
TGGACAGGCCGGCCAAGAACCCGGTGGACCTGGTGGATGAGATTGAGAAG
GAGATGGGTTTGGAGGTCGTGCCCATGGTTTGGCCGATTGGGGATGGGGA
GGATTTCAAGGGCGTGTATGATAGAGAGACCAGGGTGGTACATCTGTTTG
AGCGGCAAGGACGCACGGAGAAGGCCGTAGAGACGGGACAGATGCCAGTG
GATGATGCGAGGCTACCTGATTTGTTGGGTCCTGCTTTGTTTAAGCAACT
GGAGGAGGACGTTGAGCTGTTGGATGCGTTGATGCCTGCGTTGGACATTG
CCAAGGTGATGCGGGGTGAGCAGACGCCGATGTTTTTTGGTTCGGCCATG
TCGAATTTCGGGGTGGCGTTGTTTTTAAACAAGTTTTTGTCGATATCGGA
GCCACCGGCGCCGAGGGAGACGACCACAGGGTTGATCGGACCGGAGCATC
CAGAGTTCACTGGATTTGTGTTCAAGCTGCAGGCGAATTTGAATCCGAAA
CATCGGGACAGGGTGGCGTATGTGAGGATTTGCTCTGGGAAATTCGAGAA
GGGAATGAAAGTCTCTCATTCGCGGCTGAAAGGGCGGCAAGTGAACTTGT
CACAAGCGTCGATGTTGTTTGGGCAAGACCGAGAGACGATTGAGGAGGCG
TATCCTGGGGATGTGGTGGGATTGAACAATCCGGGACTGTTTGCTATTGG
TGACTCTATTTTTACGGGGGCGAAGACGGTGAAGTTCCCGGGCATTCCCT
CTTTTTCGCCCGAGGTGTTTGCGTATATTTTCAACCCATCTGCAGGAAAA
TATAAAAGTTTTAAGAAGGGTATTGATGAATTGTTGGAAGAGGGTGCCGT
GCAGTTGCTTTATGAGCGAAATGATGAAGGAAAATCGTCTCCTATCTTGG
CAGCTGTGGGGCCATTGCAGCTCGAGGTGGTGTCGTATCGAATGAAGGAG
GAATATGGGGTGGAGACACGACTAGAGCCATTGACGTTCACGGCGGCTCG
GTGGTCGGAAGCGACGTGGGAGGAGATTGATAAGGCTGACGAGGAGGGGT
TGATTTTTGGGGCGATGAAATGTAAAGATCGATGGGGGAGGCCAGTGCTT
CTTTTTAGGAATGATTGGAAGATGAACCAAGTGGCGGATGAGGCTCCATA
TTTGAAGTTGGTGCCTTGGGCATTTGCACCTGATGAAGAGTAG back to top
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