NO13G02020, NO13G02020 (gene) Nannochloropsis oceanica

Overview
NameNO13G02020
Unique NameNO13G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1965
Alignment locationchr13:579267..581231 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:579267..581231 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO13G02020 vs. NCBI_GenBank
Match: EWM21866.1 (hypothetical protein Naga_100169g8 [Nannochloropsis gaditana])

HSP 1 Score: 254.2 bits (648), Expect = 1.100e-63
Identity = 192/241 (79.67%), Postives = 210/241 (87.14%), Query Frame = 0 
Query:  162 VQKLAAKNQRLMVKILECEKALDKTGPIPRRDLLDQVNKLKGRLQTHLTKMATWLDKNKYDRTRRSAGAKATYRTVVLENKILKEPRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATRSRYSGVYWDKRSNAWSAWLTLAGGHNKCLGYFYLEADAVGAQQQAISEYRATGQIKGPFKGQLGPTPDPAAQQAALQAEHIKSVAETAKRL 403
            V+KL AKN+RLMVKILECEKAL+KTGPIPR+DLLD+VNK KGRLQ HLTKMATW+DK+KY+R+RR    KATYRTVVLENKILKEPRAA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SRYSGVY+D+R + WSAWLTLAGGHNKCLGYF  E DAV AQQQAISEYR TGQI GPFKGQLG  P+   Q +++Q +HIKSVAETAK+L
Sbjct:  153 VKKLVAKNERLMVKILECEKALEKTGPIPRQDLLDRVNKFKGRLQAHLTKMATWMDKSKYERSRRFQPQKATYRTVVLENKILKEPRAA----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRYSGVYYDERGSVWSAWLTLAGGHNKCLGYFRQEMDAVEAQQQAISEYRTTGQITGPFKGQLGALPE-GVQPSSVQEQHIKSVAETAKKL 388
[Close]
BLAST of NO13G02020 vs. NCBI_GenBank
Match: XP_005855654.1 (hypothetical protein NGA_0622600 [Nannochloropsis gaditana CCMP526] >EKU20702.1 hypothetical protein NGA_0622600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 253.8 bits (647), Expect = 1.400e-63
Identity = 192/241 (79.67%), Postives = 210/241 (87.14%), Query Frame = 0 
Query:  162 VQKLAAKNQRLMVKILECEKALDKTGPIPRRDLLDQVNKLKGRLQTHLTKMATWLDKNKYDRTRRSAGAKATYRTVVLENKILKEPRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATRSRYSGVYWDKRSNAWSAWLTLAGGHNKCLGYFYLEADAVGAQQQAISEYRATGQIKGPFKGQLGPTPDPAAQQAALQAEHIKSVAETAKRL 403
            V+KL AKN+RLMVKILECEKAL+KTGPIPR+DLLD+VNK KGRLQ HLTKMATW+DK+KY+R+RR    KATYRTVVLENKILKEPRAA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SRYSGVY+D+R + WSAWLTLAGGHNKCLGYF  E DAV AQQQAISEYR TGQI GPFKGQLG  P+   Q +++Q +HIKSVAETAK+L
Sbjct:  153 VKKLVAKNERLMVKILECEKALEKTGPIPRQDLLDRVNKFKGRLQAHLTKMATWMDKSKYERSRRFQPQKATYRTVVLENKILKEPRAA----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRYSGVYYDERGSVWSAWLTLAGGHNKCLGYFRQEMDAVEAQQQAISEYRTTGQITGPFKGQLGALPE-GMQPSSVQEQHIKSVAETAKKL 388
The following BLAST results are available for this feature:
BLAST of NO13G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21866.11.100e-6379.67hypothetical protein Naga_100169g8 [Nannochloropsi... [more]
XP_005855654.11.400e-6379.67hypothetical protein NGA_0622600 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001693NSK001693Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02020.1NO13G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|113722gene_6807Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100169g8gene8568Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02020.1NO13G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02020 ID=NO13G02020|Name=NO13G02020|organism=Nannochloropsis oceanica|type=gene|length=1965bp
ATGTCAGCGGCGCAGCAACTTGCGCAGCAACAAGCGGCCGCGGCCTTCTA
CGCCAACATGACGCCGGAGCAGTACCAAGCCTATTACACGCAGTACTACG
CCCAGCGAGCAGCCCAACAACAACAACAGCAGCAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAACAGCAACAACGACTACAGCAAGCCGG
CTATGGCGCTCAACAAATCAGTGGTCGCAAGTCCTCCCGTGGGGGCACTG
CGTCGCAAGCCGACGCATACCAAAAATACTACCAAGACTACTACCAGCAA
TACGGCTTTTATCCACCTGGGGCCTATGGCCAACAAGAAGGCAGTGCAGG
ACGGGCCGGGGCTGGATATGGGGGTCATGCGGCGAGTGGGTACGGGCATT
CCTCGGCTTCGTATTACGGAGAAGGGGGGGGCTACGGAGCGGCCGGCGGG
CACCCTGCAGCGGGAGGGTTGGACGCAGAAGGAGTCCAGAAGCTAGCTGC
CAAGAACCAGCGACTCATGGTAAAAATTTTGGAGTGCGAAAAAGCATTGG
ATAAAACGGGGCCCATACCCCGGCGCGATTTGCTCGATCAAGTGAATAAG
CTCAAGGGCCGTCTGCAGACGCACCTGACCAAAATGGCCACATGGTTGGA
TAAAAATAAATATGACCGAACGCGTCGCTCCGCAGGCGCCAAAGCCACCT
ATCGTACTGTGGTTCTAGAAAATAAGATTCTCAAGGAACCCCGCGCTGCC
TCCGGTGCTAGCCTGACGTCCTCTTCCTCCGTGGGCGCGCCCGGGCACCA
CAGGCAAGCGAGCAGTGGCCGAGCCATGTCCAACTCTGCAGCCTACTACC
AACAGCAGCAACAAACCACTGCGGCCGCCGCTGCCCAGCAGTCATCTGTG
GCTGCAACAGCCACTGCGGCAGATGCGACGCGTTCGCGGTATTCGGGGGT
GTATTGGGACAAGCGGAGTAATGCTTGGAGTGCTTGGTTGACTTTGGCGG
GGGGGCATAACAAGTGTCTGGGTTACTTCTATCTGGAGGCGGATGCGGTG
GGGGCGCAACAGCAGGCAATAAGTGAGTATCGCGCTACGGGGCAAATTAA
GGGTCCGTTTAAGGGACAGTTGGGGCCTACCCCCGACCCGGCTGCGCAGC
AAGCTGCGTTGCAGGCTGAGCACATCAAGTCGGTGGCCGAGACGGCTAAA
AGGCTGAAGGCCGAGAAGGCAAAGAAGAAGAGATTGAGTGCAGCAGCAGG
GGAGGGTGGGGGGGAAGAGAGCGAGTACGAGGGGTCGGGGGATGAGGAGG
GAGGAGGGTCGGATTCGGATTCGGACGGGGAGGGGGAGGAGGAGGGCGGG
AGGGGAGGGGAAGTGGGAATGGCCGGAGGGGAAGGGACGAAGAGGAAGTC
TGTCAAGCATGGGCAGGGGGTAGCGGCGACAGCGGCAGCTTACGAACAGT
ACCAACGGCAATTAGCCGCTCAGCAGCAGGCAGCGCAGCACAAACATCAA
GAGGTGCAGCAGGGAGGGGCAGGAGCAGGGCAGGCAGGGGGGCAGCAACA
GTGGACACCCGAGGCGATTGCCAAGTATTACAACGACATGGCCACGACCT
ACCCCGAGCACGCGGCTTACTACCGGCAGCAAGCTGCAGCGCACGTCCAG
CAACAGCAGCAGCAAGCAGCAGCAGCCGTGGCAGCTGCAGCTGCAGCAGG
TGGTGGGTCGGGTGGAACTATCTCCATGACGGCGGCCCAGCAGCAGCAGC
AGCAGCAGCAGCAACTTTCGTATGCAGCACAGTATGCCCAGCAGCAGCAG
CATCTTGAAATGCAGCAGCAGCAACAGCAGCAGCAGCGGCAGGGTGAGCT
GCCGCAGGGAGAGAAGCTGAAGGTGAGGGTGACGGTTGGTGGCGAGACGG
AGTGCCCGGAGCCTCATTCGCTGTTTATTCGGACGGGCATCCTTTCCTCG
TCTAGGGTTTCCTAA
back to top

protein sequence of NO13G02020.1

>NO13G02020.1-protein ID=NO13G02020.1-protein|Name=NO13G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=655bp
MSAAQQLAQQQAAAAFYANMTPEQYQAYYTQYYAQRAAQQQQQQQQQQQQ
QQQQQQQQQQQRLQQAGYGAQQISGRKSSRGGTASQADAYQKYYQDYYQQ
YGFYPPGAYGQQEGSAGRAGAGYGGHAASGYGHSSASYYGEGGGYGAAGG
HPAAGGLDAEGVQKLAAKNQRLMVKILECEKALDKTGPIPRRDLLDQVNK
LKGRLQTHLTKMATWLDKNKYDRTRRSAGAKATYRTVVLENKILKEPRAA
SGASLTSSSSVGAPGHHRQASSGRAMSNSAAYYQQQQQTTAAAAAQQSSV
AATATAADATRSRYSGVYWDKRSNAWSAWLTLAGGHNKCLGYFYLEADAV
GAQQQAISEYRATGQIKGPFKGQLGPTPDPAAQQAALQAEHIKSVAETAK
RLKAEKAKKKRLSAAAGEGGGEESEYEGSGDEEGGGSDSDSDGEGEEEGG
RGGEVGMAGGEGTKRKSVKHGQGVAATAAAYEQYQRQLAAQQQAAQHKHQ
EVQQGGAGAGQAGGQQQWTPEAIAKYYNDMATTYPEHAAYYRQQAAAHVQ
QQQQQAAAAVAAAAAAGGGSGGTISMTAAQQQQQQQQQLSYAAQYAQQQQ
HLEMQQQQQQQQRQGELPQGEKLKVRVTVGGETECPEPHSLFIRTGILSS
SRVS*
back to top
Synonyms
Publications