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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:579267..581231 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02020.1 vs.
Match: EWM21866.1 (hypothetical protein Naga_100169g8 [Nannochloropsis gaditana]) HSP 1 Score: 569.7 bits (1467), Expect = 1.200e-158 Identity = 398/673 (59.14%), Postives = 456/673 (67.76%), Query Frame = 0
Query: 2 SAAQQLAQQQAAAAFYANMTPEQYQAYYTQYYAQRAAQQQQQQQQQQQQQQQQQQQQQQQRLQQAGYGAQQI---SGRKSSRGGTASQA---DAYQKYYQDYYQQYGFYPPGAYGQ-QEGSAGRAGAGYGGHAASGYGHSSASYYGEGG-----GYGAAGGHPAAGGLDAEGVQKLAAKNQRLMVKILECEKALDKTGPIPRRDLLDQVNKLKGRLQTHLTKMATWLDKNKYDRTRRSAGAKATYRTVVLENKILKEPRAASGASLTSSSSVGAPGHHRQASSGRAMSNSAAYYQQQQQTTAAAAAQQSSVAATATAADATRSRYSGVYWDKRSNAWSAWLTLAGGHNKCLGYFYLEADAVGAQQQAISEYRATGQIKGPFKGQLGPTPDPAAQQAALQAEHIKSVAETAKRLKAEKAKKKRLSAA-AGEGGGEESEYEGSGDEEGGGSDSDSDGEGEEEGGRGGEVGMAGGE--GTKRKSVKHGQGVAATAAAYEQYQRQLAAQQQAAQHKHQEVQQGGAGAGQAGGQQQWTPEAIAKYYNDMATTYPEHAAYYRQQAAAHVQQQQQQAAAAVAAAAAAGGGSGGTISMTAAQQQQQQQQQLSYAAQYAQQQQHLEMQQQQQQQQRQG--------ELPQGEKLKVRVTVGGETECPEPHSLFIRTGILSSS 652
S QQL QQ+AA A+Y NMTPEQYQAYY QYYAQ QQQ Q+ QQ GYG Q SG + SRGG AS A DAYQKYYQDYYQQYG YP GAYGQ Q AG +G YG +A GY H ++S+ G GY G + GGLDAEGV+KL AKN+RLMVKILECEKAL+KTGPIPR+DLLD+VNK KGRLQ HLTKMATW+DK+KY+R+RR KATYRTVVLENKILKEPRAA+ +SL ++S+ G H RQ S GRA S S+ Y Q TTA + ++ A+TA AA TRSRYSGVY+D+R + WSAWLTLAGGHNKCLGYF E DAV AQQQAISEYR TGQI GPFKGQLG P+ Q +++Q +HIKSVAETAK+LKAEKA+K+R SAA GEG GEESEYEGSG E GGSDS+ EEG G +GMAGG G KRKSVK GQGVAA+AAAYEQYQRQ+A QQ GAGA +A GQQQWTPEAIAKYY DMA YPEHA YY+QQAAAHV QQQQ AAAA AAA G G Q + ++ Y QQQQ L QQQQ G EL +GE++KVRVTV G PEPH L+IR G+++++
Sbjct: 3 SHQQQLEQQRAAEAYYRNMTPEQYQAYYNQYYAQ---------------------QQQHQQYQQGGYGYPQTATTSGNRKSRGGVASAAAAADAYQKYYQDYYQQYGVYPGGAYGQGQAAVAGASGETYGA-SAGGYPHGASSHSGAASSSYHEGYTGGAGQASVGGLDAEGVKKLVAKNERLMVKILECEKALEKTGPIPRQDLLDRVNKFKGRLQAHLTKMATWMDKSKYERSRRFQPQKATYRTVVLENKILKEPRAAANSSLVAASAPGQGAHQRQGSGGRAASASSFY---QAATTAMQPSAAAATASTAAAA-TTRSRYSGVYYDERGSVWSAWLTLAGGHNKCLGYFRQEMDAVEAQQQAISEYRTTGQITGPFKGQLGALPE-GVQPSSVQEQHIKSVAETAKKLKAEKARKRRKSAAGGGEGEGEESEYEGSGGEAAGGSDSE-----REEGHGSGGLGMAGGASGGNKRKSVKQGQGVAASAAAYEQYQRQVAQQQ-------------GAGATEAPGQQQWTPEAIAKYYEDMAKAYPEHAVYYQQQAAAHVLQQQQMAAAAAAAAGRDTGPGTG--------------QPAALSSLYTQQQQQLLRQQQQSYPGAMGGLGGAASAELKEGERIKVRVTVNGAALNPEPHPLYIRKGVVATA 616
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02020.1 ID=NO13G02020.1|Name=NO13G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp
ATGTCAGCGGCGCAGCAACTTGCGCAGCAACAAGCGGCCGCGGCCTTCTA
CGCCAACATGACGCCGGAGCAGTACCAAGCCTATTACACGCAGTACTACG
CCCAGCGAGCAGCCCAACAACAACAACAGCAGCAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAACAGCAACAACGACTACAGCAAGCCGG
CTATGGCGCTCAACAAATCAGTGGTCGCAAGTCCTCCCGTGGGGGCACTG
CGTCGCAAGCCGACGCATACCAAAAATACTACCAAGACTACTACCAGCAA
TACGGCTTTTATCCACCTGGGGCCTATGGCCAACAAGAAGGCAGTGCAGG
ACGGGCCGGGGCTGGATATGGGGGTCATGCGGCGAGTGGGTACGGGCATT
CCTCGGCTTCGTATTACGGAGAAGGGGGGGGCTACGGAGCGGCCGGCGGG
CACCCTGCAGCGGGAGGGTTGGACGCAGAAGGAGTCCAGAAGCTAGCTGC
CAAGAACCAGCGACTCATGGTAAAAATTTTGGAGTGCGAAAAAGCATTGG
ATAAAACGGGGCCCATACCCCGGCGCGATTTGCTCGATCAAGTGAATAAG
CTCAAGGGCCGTCTGCAGACGCACCTGACCAAAATGGCCACATGGTTGGA
TAAAAATAAATATGACCGAACGCGTCGCTCCGCAGGCGCCAAAGCCACCT
ATCGTACTGTGGTTCTAGAAAATAAGATTCTCAAGGAACCCCGCGCTGCC
TCCGGTGCTAGCCTGACGTCCTCTTCCTCCGTGGGCGCGCCCGGGCACCA
CAGGCAAGCGAGCAGTGGCCGAGCCATGTCCAACTCTGCAGCCTACTACC
AACAGCAGCAACAAACCACTGCGGCCGCCGCTGCCCAGCAGTCATCTGTG
GCTGCAACAGCCACTGCGGCAGATGCGACGCGTTCGCGGTATTCGGGGGT
GTATTGGGACAAGCGGAGTAATGCTTGGAGTGCTTGGTTGACTTTGGCGG
GGGGGCATAACAAGTGTCTGGGTTACTTCTATCTGGAGGCGGATGCGGTG
GGGGCGCAACAGCAGGCAATAAGTGAGTATCGCGCTACGGGGCAAATTAA
GGGTCCGTTTAAGGGACAGTTGGGGCCTACCCCCGACCCGGCTGCGCAGC
AAGCTGCGTTGCAGGCTGAGCACATCAAGTCGGTGGCCGAGACGGCTAAA
AGGCTGAAGGCCGAGAAGGCAAAGAAGAAGAGATTGAGTGCAGCAGCAGG
GGAGGGTGGGGGGGAAGAGAGCGAGTACGAGGGGTCGGGGGATGAGGAGG
GAGGAGGGTCGGATTCGGATTCGGACGGGGAGGGGGAGGAGGAGGGCGGG
AGGGGAGGGGAAGTGGGAATGGCCGGAGGGGAAGGGACGAAGAGGAAGTC
TGTCAAGCATGGGCAGGGGGTAGCGGCGACAGCGGCAGCTTACGAACAGT
ACCAACGGCAATTAGCCGCTCAGCAGCAGGCAGCGCAGCACAAACATCAA
GAGGTGCAGCAGGGAGGGGCAGGAGCAGGGCAGGCAGGGGGGCAGCAACA
GTGGACACCCGAGGCGATTGCCAAGTATTACAACGACATGGCCACGACCT
ACCCCGAGCACGCGGCTTACTACCGGCAGCAAGCTGCAGCGCACGTCCAG
CAACAGCAGCAGCAAGCAGCAGCAGCCGTGGCAGCTGCAGCTGCAGCAGG
TGGTGGGTCGGGTGGAACTATCTCCATGACGGCGGCCCAGCAGCAGCAGC
AGCAGCAGCAGCAACTTTCGTATGCAGCACAGTATGCCCAGCAGCAGCAG
CATCTTGAAATGCAGCAGCAGCAACAGCAGCAGCAGCGGCAGGGTGAGCT
GCCGCAGGGAGAGAAGCTGAAGGTGAGGGTGACGGTTGGTGGCGAGACGG
AGTGCCCGGAGCCTCATTCGCTGTTTATTCGGACGGGCATCCTTTCCTCG
TCTAGGGTTTCCTAA back to topprotein sequence of NO13G02020.1 >NO13G02020.1-protein ID=NO13G02020.1-protein|Name=NO13G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=655bp
MSAAQQLAQQQAAAAFYANMTPEQYQAYYTQYYAQRAAQQQQQQQQQQQQ
QQQQQQQQQQQRLQQAGYGAQQISGRKSSRGGTASQADAYQKYYQDYYQQ
YGFYPPGAYGQQEGSAGRAGAGYGGHAASGYGHSSASYYGEGGGYGAAGG
HPAAGGLDAEGVQKLAAKNQRLMVKILECEKALDKTGPIPRRDLLDQVNK
LKGRLQTHLTKMATWLDKNKYDRTRRSAGAKATYRTVVLENKILKEPRAA
SGASLTSSSSVGAPGHHRQASSGRAMSNSAAYYQQQQQTTAAAAAQQSSV
AATATAADATRSRYSGVYWDKRSNAWSAWLTLAGGHNKCLGYFYLEADAV
GAQQQAISEYRATGQIKGPFKGQLGPTPDPAAQQAALQAEHIKSVAETAK
RLKAEKAKKKRLSAAAGEGGGEESEYEGSGDEEGGGSDSDSDGEGEEEGG
RGGEVGMAGGEGTKRKSVKHGQGVAATAAAYEQYQRQLAAQQQAAQHKHQ
EVQQGGAGAGQAGGQQQWTPEAIAKYYNDMATTYPEHAAYYRQQAAAHVQ
QQQQQAAAAVAAAAAAGGGSGGTISMTAAQQQQQQQQQLSYAAQYAQQQQ
HLEMQQQQQQQQRQGELPQGEKLKVRVTVGGETECPEPHSLFIRTGILSS
SRVS* back to topmRNA from alignment at chr13:579267..581231- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02020.1 ID=NO13G02020.1|Name=NO13G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp|location=Sequence derived from alignment at chr13:579267..581231- (Nannochloropsis oceanica)
ATGTCAGCGGCGCAGCAACTTGCGCAGCAACAAGCGGCCGCGGCCTTCTA
CGCCAACATGACGCCGGAGCAGTACCAAGCCTATTACACGCAGTACTACG
CCCAGCGAGCAGCCCAACAACAACAACAGCAGCAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAACAGCAACAACGACTACAGCAAGCCGG
CTATGGCGCTCAACAAATCAGTGGTCGCAAGTCCTCCCGTGGGGGCACTG
CGTCGCAAGCCGACGCATACCAAAAATACTACCAAGACTACTACCAGCAA
TACGGCTTTTATCCACCTGGGGCCTATGGCCAACAAGAAGGCAGTGCAGG
ACGGGCCGGGGCTGGATATGGGGGTCATGCGGCGAGTGGGTACGGGCATT
CCTCGGCTTCGTATTACGGAGAAGGGGGGGGCTACGGAGCGGCCGGCGGG
CACCCTGCAGCGGGAGGGTTGGACGCAGAAGGAGTCCAGAAGCTAGCTGC
CAAGAACCAGCGACTCATGGTAAAAATTTTGGAGTGCGAAAAAGCATTGG
ATAAAACGGGGCCCATACCCCGGCGCGATTTGCTCGATCAAGTGAATAAG
CTCAAGGGCCGTCTGCAGACGCACCTGACCAAAATGGCCACATGGTTGGA
TAAAAATAAATATGACCGAACGCGTCGCTCCGCAGGCGCCAAAGCCACCT
ATCGTACTGTGGTTCTAGAAAATAAGATTCTCAAGGAACCCCGCGCTGCC
TCCGGTGCTAGCCTGACGTCCTCTTCCTCCGTGGGCGCGCCCGGGCACCA
CAGGCAAGCGAGCAGTGGCCGAGCCATGTCCAACTCTGCAGCCTACTACC
AACAGCAGCAACAAACCACTGCGGCCGCCGCTGCCCAGCAGTCATCTGTG
GCTGCAACAGCCACTGCGGCAGATGCGACGCGTTCGCGGTATTCGGGGGT
GTATTGGGACAAGCGGAGTAATGCTTGGAGTGCTTGGTTGACTTTGGCGG
GGGGGCATAACAAGTGTCTGGGTTACTTCTATCTGGAGGCGGATGCGGTG
GGGGCGCAACAGCAGGCAATAAGTGAGTATCGCGCTACGGGGCAAATTAA
GGGTCCGTTTAAGGGACAGTTGGGGCCTACCCCCGACCCGGCTGCGCAGC
AAGCTGCGTTGCAGGCTGAGCACATCAAGTCGGTGGCCGAGACGGCTAAA
AGGCTGAAGGCCGAGAAGGCAAAGAAGAAGAGATTGAGTGCAGCAGCAGG
GGAGGGTGGGGGGGAAGAGAGCGAGTACGAGGGGTCGGGGGATGAGGAGG
GAGGAGGGTCGGATTCGGATTCGGACGGGGAGGGGGAGGAGGAGGGCGGG
AGGGGAGGGGAAGTGGGAATGGCCGGAGGGGAAGGGACGAAGAGGAAGTC
TGTCAAGCATGGGCAGGGGGTAGCGGCGACAGCGGCAGCTTACGAACAGT
ACCAACGGCAATTAGCCGCTCAGCAGCAGGCAGCGCAGCACAAACATCAA
GAGGTGCAGCAGGGAGGGGCAGGAGCAGGGCAGGCAGGGGGGCAGCAACA
GTGGACACCCGAGGCGATTGCCAAGTATTACAACGACATGGCCACGACCT
ACCCCGAGCACGCGGCTTACTACCGGCAGCAAGCTGCAGCGCACGTCCAG
CAACAGCAGCAGCAAGCAGCAGCAGCCGTGGCAGCTGCAGCTGCAGCAGG
TGGTGGGTCGGGTGGAACTATCTCCATGACGGCGGCCCAGCAGCAGCAGC
AGCAGCAGCAGCAACTTTCGTATGCAGCACAGTATGCCCAGCAGCAGCAG
CATCTTGAAATGCAGCAGCAGCAACAGCAGCAGCAGCGGCAGGGTGAGCT
GCCGCAGGGAGAGAAGCTGAAGGTGAGGGTGACGGTTGGTGGCGAGACGG
AGTGCCCGGAGCCTCATTCGCTGTTTATTCGGACGGGCATCCTTTCCTCG
TCTAGGGTTTCCTAA back to topCoding sequence (CDS) from alignment at chr13:579267..581231- >NO13G02020.1 ID=NO13G02020.1|Name=NO13G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1965bp|location=Sequence derived from alignment at chr13:579267..581231- (Nannochloropsis oceanica)
ATGTCAGCGGCGCAGCAACTTGCGCAGCAACAAGCGGCCGCGGCCTTCTA
CGCCAACATGACGCCGGAGCAGTACCAAGCCTATTACACGCAGTACTACG
CCCAGCGAGCAGCCCAACAACAACAACAGCAGCAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAACAGCAACAACGACTACAGCAAGCCGG
CTATGGCGCTCAACAAATCAGTGGTCGCAAGTCCTCCCGTGGGGGCACTG
CGTCGCAAGCCGACGCATACCAAAAATACTACCAAGACTACTACCAGCAA
TACGGCTTTTATCCACCTGGGGCCTATGGCCAACAAGAAGGCAGTGCAGG
ACGGGCCGGGGCTGGATATGGGGGTCATGCGGCGAGTGGGTACGGGCATT
CCTCGGCTTCGTATTACGGAGAAGGGGGGGGCTACGGAGCGGCCGGCGGG
CACCCTGCAGCGGGAGGGTTGGACGCAGAAGGAGTCCAGAAGCTAGCTGC
CAAGAACCAGCGACTCATGGTAAAAATTTTGGAGTGCGAAAAAGCATTGG
ATAAAACGGGGCCCATACCCCGGCGCGATTTGCTCGATCAAGTGAATAAG
CTCAAGGGCCGTCTGCAGACGCACCTGACCAAAATGGCCACATGGTTGGA
TAAAAATAAATATGACCGAACGCGTCGCTCCGCAGGCGCCAAAGCCACCT
ATCGTACTGTGGTTCTAGAAAATAAGATTCTCAAGGAACCCCGCGCTGCC
TCCGGTGCTAGCCTGACGTCCTCTTCCTCCGTGGGCGCGCCCGGGCACCA
CAGGCAAGCGAGCAGTGGCCGAGCCATGTCCAACTCTGCAGCCTACTACC
AACAGCAGCAACAAACCACTGCGGCCGCCGCTGCCCAGCAGTCATCTGTG
GCTGCAACAGCCACTGCGGCAGATGCGACGCGTTCGCGGTATTCGGGGGT
GTATTGGGACAAGCGGAGTAATGCTTGGAGTGCTTGGTTGACTTTGGCGG
GGGGGCATAACAAGTGTCTGGGTTACTTCTATCTGGAGGCGGATGCGGTG
GGGGCGCAACAGCAGGCAATAAGTGAGTATCGCGCTACGGGGCAAATTAA
GGGTCCGTTTAAGGGACAGTTGGGGCCTACCCCCGACCCGGCTGCGCAGC
AAGCTGCGTTGCAGGCTGAGCACATCAAGTCGGTGGCCGAGACGGCTAAA
AGGCTGAAGGCCGAGAAGGCAAAGAAGAAGAGATTGAGTGCAGCAGCAGG
GGAGGGTGGGGGGGAAGAGAGCGAGTACGAGGGGTCGGGGGATGAGGAGG
GAGGAGGGTCGGATTCGGATTCGGACGGGGAGGGGGAGGAGGAGGGCGGG
AGGGGAGGGGAAGTGGGAATGGCCGGAGGGGAAGGGACGAAGAGGAAGTC
TGTCAAGCATGGGCAGGGGGTAGCGGCGACAGCGGCAGCTTACGAACAGT
ACCAACGGCAATTAGCCGCTCAGCAGCAGGCAGCGCAGCACAAACATCAA
GAGGTGCAGCAGGGAGGGGCAGGAGCAGGGCAGGCAGGGGGGCAGCAACA
GTGGACACCCGAGGCGATTGCCAAGTATTACAACGACATGGCCACGACCT
ACCCCGAGCACGCGGCTTACTACCGGCAGCAAGCTGCAGCGCACGTCCAG
CAACAGCAGCAGCAAGCAGCAGCAGCCGTGGCAGCTGCAGCTGCAGCAGG
TGGTGGGTCGGGTGGAACTATCTCCATGACGGCGGCCCAGCAGCAGCAGC
AGCAGCAGCAGCAACTTTCGTATGCAGCACAGTATGCCCAGCAGCAGCAG
CATCTTGAAATGCAGCAGCAGCAACAGCAGCAGCAGCGGCAGGGTGAGCT
GCCGCAGGGAGAGAAGCTGAAGGTGAGGGTGACGGTTGGTGGCGAGACGG
AGTGCCCGGAGCCTCATTCGCTGTTTATTCGGACGGGCATCCTTTCCTCG
TCTAGGGTTTCCTAA back to top
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