NO13G01970, NO13G01970 (gene) Nannochloropsis oceanica

Overview
NameNO13G01970
Unique NameNO13G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length630
Alignment locationchr13:567809..568438 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:567809..568438 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
Homology
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BLAST of NO13G01970 vs. NCBI_GenBank
Match: EJK69428.1 (hypothetical protein THAOC_09318 [Thalassiosira oceanica])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 46/155 (29.68%), Postives = 82/155 (52.90%), Query Frame = 0 
Query:   64 CCGLLKPCWQSRYFVIVGRFLYRFGSAESSEPKGAPLALEGMNV-CALEDEILPY-------AFLISTLSKAVVVAADSADARIVWMHELRKAKQRAIKEGLGHAVE---KKEHVALNKKGRNLLQRKL-IERRAE--GGKRVEMRTLGGGVWGF 205
            C   + P W+ RY + VG +LYRF   + + PKGAP+A+  ++V    E+++L +        F +S+++K    A  S++   +W++ L++ +Q  I   +GH+ +    +     +   R L++RK  I+ R E    K  EM+TLGG   G+
Sbjct:   68 CPKFMAPQWKRRYLIAVGEYLYRFKDEDGTTPKGAPIAIGPISVQIVTEEDVLDFLPPGCDAVFEVSSVAKTQYFAVQSSEDAALWVNTLKEMRQACITRQMGHSKDMGYPESWAKYDTSARRLIERKARIKSRLEALNKKEQEMQTLGGSGVGY 222
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BLAST of NO13G01970 vs. NCBI_GenBank
Match: XP_002177932.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50746.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 70.9 bits (172), Expect = 5.500e-9
Identity = 35/104 (33.65%), Postives = 56/104 (53.85%), Query Frame = 0 
Query:   68 LKPCWQSRYFVIVGRFLYRFGSAESSEPKGAPLALEGMNVCALEDE--------ILPYAF---LISTLSKAVVVAADSADARIVWMHELRKAKQRAIKEGLGHA 161
            L+PCWQ R+ +++G +LY+F   +SS PKG+P+ +E + V A+            LP  +    ++TL K    A  S +    W+H L +A+  A K  +GHA
Sbjct:   76 LRPCWQERHLILLGSYLYKFSDEKSSSPKGSPIPVESIEVHAVHSRDADNLVFPSLPSGYQVLSVTTLRKQQYFAVRSKEEASSWLHSLHEARHEATKREMGHA 179
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BLAST of NO13G01970 vs. NCBI_GenBank
Match: GBG25412.1 (Sesquipedalian-1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-8
Identity = 41/117 (35.04%), Postives = 60/117 (51.28%), Query Frame = 0 
Query:   70 PC----WQSRYFVIVGRFLYRFGSAESSEPKGAPLALEGMNVCAL------EDEILPYAFLISTLSKAVVVAADSADARIVWMHELRKAKQRAIKEGLGHAVEKKEHVALNKKGRNL 177
            PC    ++ RY V+ G+++YRF S      KG PL LE   +         + E+LP+AF +S++ K  + AA SA  R  W+  L  A+  AIK+ LGHA  +      N  G +L
Sbjct:   37 PCFGTEFKRRYVVLRGKYMYRFKSENHKRVKGVPLDLEEFQLEVADYEVDDDGEVLPFAFKLSSVRKVYLFAASSARERQAWLQALAAARSHAIKQRLGHAERQAWETRNNNLGASL 153
The following BLAST results are available for this feature:
BLAST of NO13G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EJK69428.11.100e-929.68hypothetical protein THAOC_09318 [Thalassiosira oc... [more]
XP_002177932.15.500e-933.65predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GBG25412.16.000e-835.04Sesquipedalian-1 [Aurantiochytrium sp. FCC1311][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01970.1NO13G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01970.1NO13G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01970 ID=NO13G01970|Name=NO13G01970|organism=Nannochloropsis oceanica|type=gene|length=630bp
ATGTTCCAAACGCTAGGGCTGCAGGCGTATCAACCTCTCCCTGCGGACAC
AGGCGATGATGCCACGTCAAGAGTCATCCTGGACCAGGTAACGCTGGGTA
TTTACGACTTGAATGACAGTATTTCGGTCCTGCAAGCCCGTCGTGCAGGA
GCGTGCTATCAGGGACAGCTTTCCAAGAAGAGGGAGCGGTGTTGTGGGCT
TTTAAAGCCATGCTGGCAGTCCCGCTATTTTGTTATTGTAGGCCGCTTCC
TCTATCGCTTCGGGTCGGCCGAGTCTAGTGAACCAAAGGGAGCGCCTTTG
GCCTTGGAGGGAATGAATGTGTGCGCGCTGGAGGACGAGATACTACCGTA
CGCTTTCCTTATTTCTACGTTAAGCAAAGCGGTCGTGGTCGCTGCGGACA
GCGCTGACGCCCGCATCGTATGGATGCATGAGCTGCGCAAAGCAAAGCAG
AGGGCCATCAAGGAAGGGTTGGGACATGCAGTGGAAAAAAAAGAACACGT
CGCGCTCAACAAAAAAGGAAGGAACTTATTGCAGCGGAAGTTGATAGAAC
GCAGGGCGGAGGGGGGGAAAAGGGTGGAGATGAGGACCTTGGGAGGTGGA
GTGTGGGGCTTTGTGGATCCCCATTACTAG
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protein sequence of NO13G01970.1

>NO13G01970.1-protein ID=NO13G01970.1-protein|Name=NO13G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MFQTLGLQAYQPLPADTGDDATSRVILDQVTLGIYDLNDSISVLQARRAG
ACYQGQLSKKRERCCGLLKPCWQSRYFVIVGRFLYRFGSAESSEPKGAPL
ALEGMNVCALEDEILPYAFLISTLSKAVVVAADSADARIVWMHELRKAKQ
RAIKEGLGHAVEKKEHVALNKKGRNLLQRKLIERRAEGGKRVEMRTLGGG
VWGFVDPHY*
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Synonyms
Publications