NO13G01970.1, NO13G01970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01970.1
Unique NameNO13G01970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length630
Alignment locationchr13:567809..568438 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:567809..568438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01970.1 vs.
Match: EJK69428.1 (hypothetical protein THAOC_09318 [Thalassiosira oceanica])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 46/155 (29.68%), Postives = 82/155 (52.90%), Query Frame = 0 
Query:   64 CCGLLKPCWQSRYFVIVGRFLYRFGSAESSEPKGAPLALEGMNV-CALEDEILPY-------AFLISTLSKAVVVAADSADARIVWMHELRKAKQRAIKEGLGHAVE---KKEHVALNKKGRNLLQRKL-IERRAE--GGKRVEMRTLGGGVWGF 205
            C   + P W+ RY + VG +LYRF   + + PKGAP+A+  ++V    E+++L +        F +S+++K    A  S++   +W++ L++ +Q  I   +GH+ +    +     +   R L++RK  I+ R E    K  EM+TLGG   G+
Sbjct:   68 CPKFMAPQWKRRYLIAVGEYLYRFKDEDGTTPKGAPIAIGPISVQIVTEEDVLDFLPPGCDAVFEVSSVAKTQYFAVQSSEDAALWVNTLKEMRQACITRQMGHSKDMGYPESWAKYDTSARRLIERKARIKSRLEALNKKEQEMQTLGGSGVGY 222
The following BLAST results are available for this feature:
BLAST of NO13G01970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EJK69428.11.100e-929.68hypothetical protein THAOC_09318 [Thalassiosira oc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01970NO13G01970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01970.1NO13G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01970.1.cds1NO13G01970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01970.1 ID=NO13G01970.1|Name=NO13G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
ATGTTCCAAACGCTAGGGCTGCAGGCGTATCAACCTCTCCCTGCGGACAC
AGGCGATGATGCCACGTCAAGAGTCATCCTGGACCAGGTAACGCTGGGTA
TTTACGACTTGAATGACAGTATTTCGGTCCTGCAAGCCCGTCGTGCAGGA
GCGTGCTATCAGGGACAGCTTTCCAAGAAGAGGGAGCGGTGTTGTGGGCT
TTTAAAGCCATGCTGGCAGTCCCGCTATTTTGTTATTGTAGGCCGCTTCC
TCTATCGCTTCGGGTCGGCCGAGTCTAGTGAACCAAAGGGAGCGCCTTTG
GCCTTGGAGGGAATGAATGTGTGCGCGCTGGAGGACGAGATACTACCGTA
CGCTTTCCTTATTTCTACGTTAAGCAAAGCGGTCGTGGTCGCTGCGGACA
GCGCTGACGCCCGCATCGTATGGATGCATGAGCTGCGCAAAGCAAAGCAG
AGGGCCATCAAGGAAGGGTTGGGACATGCAGTGGAAAAAAAAGAACACGT
CGCGCTCAACAAAAAAGGAAGGAACTTATTGCAGCGGAAGTTGATAGAAC
GCAGGGCGGAGGGGGGGAAAAGGGTGGAGATGAGGACCTTGGGAGGTGGA
GTGTGGGGCTTTGTGGATCCCCATTACTAG
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protein sequence of NO13G01970.1

>NO13G01970.1-protein ID=NO13G01970.1-protein|Name=NO13G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MFQTLGLQAYQPLPADTGDDATSRVILDQVTLGIYDLNDSISVLQARRAG
ACYQGQLSKKRERCCGLLKPCWQSRYFVIVGRFLYRFGSAESSEPKGAPL
ALEGMNVCALEDEILPYAFLISTLSKAVVVAADSADARIVWMHELRKAKQ
RAIKEGLGHAVEKKEHVALNKKGRNLLQRKLIERRAEGGKRVEMRTLGGG
VWGFVDPHY*
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mRNA from alignment at chr13:567809..568438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01970.1 ID=NO13G01970.1|Name=NO13G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=630bp|location=Sequence derived from alignment at chr13:567809..568438+ (Nannochloropsis oceanica)
ATGTTCCAAACGCTAGGGCTGCAGGCGTATCAACCTCTCCCTGCGGACAC
AGGCGATGATGCCACGTCAAGAGTCATCCTGGACCAGGTAACGCTGGGTA
TTTACGACTTGAATGACAGTATTTCGGTCCTGCAAGCCCGTCGTGCAGGA
GCGTGCTATCAGGGACAGCTTTCCAAGAAGAGGGAGCGGTGTTGTGGGCT
TTTAAAGCCATGCTGGCAGTCCCGCTATTTTGTTATTGTAGGCCGCTTCC
TCTATCGCTTCGGGTCGGCCGAGTCTAGTGAACCAAAGGGAGCGCCTTTG
GCCTTGGAGGGAATGAATGTGTGCGCGCTGGAGGACGAGATACTACCGTA
CGCTTTCCTTATTTCTACGTTAAGCAAAGCGGTCGTGGTCGCTGCGGACA
GCGCTGACGCCCGCATCGTATGGATGCATGAGCTGCGCAAAGCAAAGCAG
AGGGCCATCAAGGAAGGGTTGGGACATGCAGTGGAAAAAAAAGAACACGT
CGCGCTCAACAAAAAAGGAAGGAACTTATTGCAGCGGAAGTTGATAGAAC
GCAGGGCGGAGGGGGGGAAAAGGGTGGAGATGAGGACCTTGGGAGGTGGA
GTGTGGGGCTTTGTGGATCCCCATTACTAG
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Coding sequence (CDS) from alignment at chr13:567809..568438+

>NO13G01970.1 ID=NO13G01970.1|Name=NO13G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr13:567809..568438+ (Nannochloropsis oceanica)
ATGTTCCAAACGCTAGGGCTGCAGGCGTATCAACCTCTCCCTGCGGACAC
AGGCGATGATGCCACGTCAAGAGTCATCCTGGACCAGGTAACGCTGGGTA
TTTACGACTTGAATGACAGTATTTCGGTCCTGCAAGCCCGTCGTGCAGGA
GCGTGCTATCAGGGACAGCTTTCCAAGAAGAGGGAGCGGTGTTGTGGGCT
TTTAAAGCCATGCTGGCAGTCCCGCTATTTTGTTATTGTAGGCCGCTTCC
TCTATCGCTTCGGGTCGGCCGAGTCTAGTGAACCAAAGGGAGCGCCTTTG
GCCTTGGAGGGAATGAATGTGTGCGCGCTGGAGGACGAGATACTACCGTA
CGCTTTCCTTATTTCTACGTTAAGCAAAGCGGTCGTGGTCGCTGCGGACA
GCGCTGACGCCCGCATCGTATGGATGCATGAGCTGCGCAAAGCAAAGCAG
AGGGCCATCAAGGAAGGGTTGGGACATGCAGTGGAAAAAAAAGAACACGT
CGCGCTCAACAAAAAAGGAAGGAACTTATTGCAGCGGAAGTTGATAGAAC
GCAGGGCGGAGGGGGGGAAAAGGGTGGAGATGAGGACCTTGGGAGGTGGA
GTGTGGGGCTTTGTGGATCCCCATTACTAG
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Synonyms
Publications