NO13G01960, NO13G01960 (gene) Nannochloropsis oceanica

Overview
NameNO13G01960
Unique NameNO13G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length636
Alignment locationchr13:566979..567614 -

Link to JBrowse

Properties
Property NameValue
DescriptionKelch-like protein diablo
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:566979..567614 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Homology
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BLAST of NO13G01960 vs. NCBI_GenBank
Match: EWM21870.1 (kelch-like protein diablo [Nannochloropsis gaditana])

HSP 1 Score: 77.4 bits (189), Expect = 4.600e-11
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0 
Query:   41 IFTSLPPDLLHLALPFLDGTALGRWEQTCQAAL-TLVVHRNEELWHAAAAREYQWFNPVKPSYLSFKQFYVALRKSSWPTE 121
            I+ +LP DLL+  L + D + L RWEQTC  A  +L   +   LW  A   ++QWF   KPSY+S K+F + LRKS WP E
Sbjct:   34 IYDTLPTDLLYFVLRYFDASMLARWEQTCLLARNSLEGQKGVALWQMATEYQFQWFITSKPSYISQKRFLLQLRKSCWPIE 114
The following BLAST results are available for this feature:
BLAST of NO13G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21870.14.600e-1145.68kelch-like protein diablo [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01960.1NO13G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01960.1NO13G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01960 ID=NO13G01960|Name=NO13G01960|organism=Nannochloropsis oceanica|type=gene|length=636bp
ATGCAAGTATTTCCAGAGGTGACAGCGCCAGCCGTATCTAATAAAAGAGG
CTGCGGCAATTCTGGTGGCAAGCCCAAGGACAACTCCTCTTCCCAGAACG
CTTCGTCTTGCATCTTGCGCATCTTCACGTCTTTGCCTCCTGACCTGCTA
CACTTGGCGCTCCCCTTTCTCGACGGTACTGCTCTTGGACGATGGGAACA
GACATGCCAGGCAGCGTTGACCTTGGTAGTGCACAGAAATGAGGAGCTAT
GGCATGCGGCAGCAGCGCGAGAATATCAATGGTTCAACCCCGTCAAGCCC
TCTTATCTTTCTTTCAAACAATTCTACGTCGCCTTGCGCAAAAGCTCCTG
GCCCACGGAGCCGAGCATGAATACTGGTATTATCGCTGATGAGGGTGTCC
ATCGGCCCGGCAAATTgtacgtagtaggaggctcctctgatcgccccatg
cccctgcagacgtgcgaattcttcaacgacttgggcggaaccaagaaact
acccatgaaatccccccccccttctctctgtatcccatcgcgcacttgca
ccagAAACGATCCGCGCCGGGTGTGGCTCGGGATCATGAAGATGGAGTGT
GGGCCGTCGGGGGATGGTCGGGGTCGGCTGCTTTGA
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protein sequence of NO13G01960.1

>NO13G01960.1-protein ID=NO13G01960.1-protein|Name=NO13G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MQVFPEVTAPAVSNKRGCGNSGGKPKDNSSSQNASSCILRIFTSLPPDLL
HLALPFLDGTALGRWEQTCQAALTLVVHRNEELWHAAAAREYQWFNPVKP
SYLSFKQFYVALRKSSWPTEPSMNTGIIADEGVHRPGKLNDPRRVWLGIM
KMECGPSGDGRGRLL*
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Synonyms
Publications