NO13G01960.1, NO13G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01960.1
Unique NameNO13G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length498
Alignment locationchr13:566979..567614 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:566979..567614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01960.1 vs.
Match: EWM21870.1 (kelch-like protein diablo [Nannochloropsis gaditana])

HSP 1 Score: 77.4 bits (189), Expect = 4.600e-11
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0 
Query:   41 IFTSLPPDLLHLALPFLDGTALGRWEQTCQAAL-TLVVHRNEELWHAAAAREYQWFNPVKPSYLSFKQFYVALRKSSWPTE 121
            I+ +LP DLL+  L + D + L RWEQTC  A  +L   +   LW  A   ++QWF   KPSY+S K+F + LRKS WP E
Sbjct:   34 IYDTLPTDLLYFVLRYFDASMLARWEQTCLLARNSLEGQKGVALWQMATEYQFQWFITSKPSYISQKRFLLQLRKSCWPIE 114
The following BLAST results are available for this feature:
BLAST of NO13G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21870.14.600e-1145.68kelch-like protein diablo [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01960NO13G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01960.1NO13G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01960.1.cds1NO13G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01960.1.cds2NO13G01960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01960.1 ID=NO13G01960.1|Name=NO13G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
ATGCAAGTATTTCCAGAGGTGACAGCGCCAGCCGTATCTAATAAAAGAGG
CTGCGGCAATTCTGGTGGCAAGCCCAAGGACAACTCCTCTTCCCAGAACG
CTTCGTCTTGCATCTTGCGCATCTTCACGTCTTTGCCTCCTGACCTGCTA
CACTTGGCGCTCCCCTTTCTCGACGGTACTGCTCTTGGACGATGGGAACA
GACATGCCAGGCAGCGTTGACCTTGGTAGTGCACAGAAATGAGGAGCTAT
GGCATGCGGCAGCAGCGCGAGAATATCAATGGTTCAACCCCGTCAAGCCC
TCTTATCTTTCTTTCAAACAATTCTACGTCGCCTTGCGCAAAAGCTCCTG
GCCCACGGAGCCGAGCATGAATACTGGTATTATCGCTGATGAGGGTGTCC
ATCGGCCCGGCAAATTAAACGATCCGCGCCGGGTGTGGCTCGGGATCATG
AAGATGGAGTGTGGGCCGTCGGGGGATGGTCGGGGTCGGCTGCTTTGA
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protein sequence of NO13G01960.1

>NO13G01960.1-protein ID=NO13G01960.1-protein|Name=NO13G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MQVFPEVTAPAVSNKRGCGNSGGKPKDNSSSQNASSCILRIFTSLPPDLL
HLALPFLDGTALGRWEQTCQAALTLVVHRNEELWHAAAAREYQWFNPVKP
SYLSFKQFYVALRKSSWPTEPSMNTGIIADEGVHRPGKLNDPRRVWLGIM
KMECGPSGDGRGRLL*
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mRNA from alignment at chr13:566979..567614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01960.1 ID=NO13G01960.1|Name=NO13G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=636bp|location=Sequence derived from alignment at chr13:566979..567614- (Nannochloropsis oceanica)
ATGCAAGTATTTCCAGAGGTGACAGCGCCAGCCGTATCTAATAAAAGAGG
CTGCGGCAATTCTGGTGGCAAGCCCAAGGACAACTCCTCTTCCCAGAACG
CTTCGTCTTGCATCTTGCGCATCTTCACGTCTTTGCCTCCTGACCTGCTA
CACTTGGCGCTCCCCTTTCTCGACGGTACTGCTCTTGGACGATGGGAACA
GACATGCCAGGCAGCGTTGACCTTGGTAGTGCACAGAAATGAGGAGCTAT
GGCATGCGGCAGCAGCGCGAGAATATCAATGGTTCAACCCCGTCAAGCCC
TCTTATCTTTCTTTCAAACAATTCTACGTCGCCTTGCGCAAAAGCTCCTG
GCCCACGGAGCCGAGCATGAATACTGGTATTATCGCTGATGAGGGTGTCC
ATCGGCCCGGCAAATTGTACGTAGTAGGAGGCTCCTCTGATCGCCCCATG
CCCCTGCAGACGTGCGAATTCTTCAACGACTTGGGCGGAACCAAGAAACT
ACCCATGAAATCCCCCCCCCCTTCTCTCTGTATCCCATCGCGCACTTGCA
CCAGAAACGATCCGCGCCGGGTGTGGCTCGGGATCATGAAGATGGAGTGT
GGGCCGTCGGGGGATGGTCGGGGTCGGCTGCTTTGA
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Coding sequence (CDS) from alignment at chr13:566979..567614-

>NO13G01960.1 ID=NO13G01960.1|Name=NO13G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr13:566979..567614- (Nannochloropsis oceanica)
ATGCAAGTATTTCCAGAGGTGACAGCGCCAGCCGTATCTAATAAAAGAGG
CTGCGGCAATTCTGGTGGCAAGCCCAAGGACAACTCCTCTTCCCAGAACG
CTTCGTCTTGCATCTTGCGCATCTTCACGTCTTTGCCTCCTGACCTGCTA
CACTTGGCGCTCCCCTTTCTCGACGGTACTGCTCTTGGACGATGGGAACA
GACATGCCAGGCAGCGTTGACCTTGGTAGTGCACAGAAATGAGGAGCTAT
GGCATGCGGCAGCAGCGCGAGAATATCAATGGTTCAACCCCGTCAAGCCC
TCTTATCTTTCTTTCAAACAATTCTACGTCGCCTTGCGCAAAAGCTCCTG
GCCCACGGAGCCGAGCATGAATACTGGTATTATCGCTGATGAGGGTGTCC
ATCGGCCCGGCAAATTAAACGATCCGCGCCGGGTGTGGCTCGGGATCATG
AAGATGGAGTGTGGGCCGTCGGGGGATGGTCGGGGTCGGCTGCTTTGA
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Synonyms
Publications