NO13G01420, NO13G01420 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO13G01420 vs. NCBI_GenBank
Match: EWM21799.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 447.6 bits (1150), Expect = 3.700e-122 Identity = 237/362 (65.47%), Postives = 283/362 (78.18%), Query Frame = 0 Query: 1 MPLSVPASSFLVLVLATILPFLSHVQAFSSPSRLPSQHSPYDRRPPTIPPSSPAT-----EDRGSNLYRPLNPLLGPGSRVAIDGADAPGESNTLARLITKKLFKSQMRPYLLVPSMDKVPTGLGFDQYKGLTRYLCTAAVDEKKGGDGKIPLEIDGLVLCSEMGYTSKQVRELLERVED-EEGDKDKRETAGGTGEKKGLKRVVMLSSLGVIRREDVIWKLKQFGVDLEKRYQAEQELISQAQRRGFTYTLIRVGPLRGGGGDEGLGFEFYDHRSSSKFQTLLKNPLSVLDDKDEHFDATKRGFTFSYEDNLVFGDTGRILAAETMIKALGSAHVEDVALSLVSEQGRTWPNFQVAPWDLF 357 MP + + + + I+ + V+AFSS SR P SPYDRR P I PS+P T + RGSNLYRP NPLLGPGSRVAIDGA+APGE +TLARLIT KLFKSQMRPYL++PS+ KVPTGLGFDQY+GL+RY+CTA VD+ K GDG+ P EIDGLVLCSE GYT+ +R +L RV+D +E + E+ GEK GLKRVVMLSSLGV RRED++WK+ QFGVDLE R+QAEQELI+QA RRGFTYTLIRVGPLRGGGG+EGLG +FY+ ++ + L P S+ +DE FD T+RGFTFSY DN + G+TGR+LAAET +KALGSAHVEDVA++LVSEQGRTWPNFQVAPWDLF Sbjct: 6 MPPAYMQFATKICLFLGIISVIRPVRAFSS-SRSPPPQSPYDRRSPPINPSTPPTHADLEQGRGSNLYRPFNPLLGPGSRVAIDGANAPGEGSTLARLITIKLFKSQMRPYLVIPSLSKVPTGLGFDQYRGLSRYICTAPVDKMKEGDGRFPPEIDGLVLCSERGYTAHDIRAILARVDDGKEESRGGIESRAEAGEKTGLKRVVMLSSLGVNRREDMMWKIWQFGVDLEARHQAEQELIAQAHRRGFTYTLIRVGPLRGGGGEEGLGNDFYE-QNEGRHHPLNPFP-SLAAKRDEAFDLTRRGFTFSYCDN-IQGETGRVLAAETFVKALGSAHVEDVAIALVSEQGRTWPNFQVAPWDLF 363
BLAST of NO13G01420 vs. NCBI_GenBank
Match: XP_005853658.1 (hypothetical protein NGA_0272502 [Nannochloropsis gaditana CCMP526] >EKU22699.1 hypothetical protein NGA_0272502 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 431.8 bits (1109), Expect = 2.100e-117 Identity = 232/357 (64.99%), Postives = 272/357 (76.19%), Query Frame = 0 Query: 18 ILPFLSHVQAFSSPSRLPSQHSPYDRRPPTIPPSSPAT-----EDRGSNLYRPLNPLLGPGSRVAIDGADAPGESNTLARLITKKLFKSQMRPYLLVPSMDKVPTGLGFDQYKGLTRYLCTAAVDEKKGGDGKIPLEIDGLVLCSEMGYTSKQVRELLERVED-EEGDKDKRETAGGTGEKKGLKRVVMLSSLGVIRREDVIWKLKQFGVDLEKRYQAE------------QELISQAQRRGFTYTLIRVGPLRGGGGDEGLGFEFYDHRSSSKFQTLLKNPLSVLDDKDEHFDATKRGFTFSYEDNLVFGDTGRILAAETMIKALGSAHVEDVALSLVSEQGRTWPNFQVAPWDLF 357 I+ + V+AFSS SR P SPYDRR P+I PS+P T + RGSNLYRP NPLLGPGSRVAIDGA+APGE +TLARLIT KLFKSQMRPYL++PS+ KVPTGLGFDQY+GL+RY+CTA VD+ K GDG+ P EIDGLVLCSE GYT+ VR +L RV+D +E + E+ GE GLKRVVMLSSLGV RRED++WK+ QFGVDLE R E ELI+QA RRGFTYTLIRVGPLRGGGG+EGLG +FY ++ + L P S+ +DE FD T+RGFTFSY DN + G+TGR+LAAET +KALGSAHVEDVA++LVSEQGRTWPNFQVAPWDLF Sbjct: 13 IISVIRPVRAFSS-SRPPPPQSPYDRRSPSINPSTPPTHADLEQGRGSNLYRPFNPLLGPGSRVAIDGANAPGEGSTLARLITMKLFKSQMRPYLVIPSLGKVPTGLGFDQYRGLSRYICTAPVDKMKEGDGRFPPEIDGLVLCSERGYTAHDVRAILARVDDGKEESRGGIESRAEAGETTGLKRVVMLSSLGVNRREDMMWKIWQFGVDLEARVSREXXXXXXXXXXXXXELIAQAHRRGFTYTLIRVGPLRGGGGEEGLGNDFYG-QNEGRHHPLNPFP-SLAAKRDEAFDLTRRGFTFSYCDN-IQGETGRVLAAETFVKALGSAHVEDVAIALVSEQGRTWPNFQVAPWDLF 365
BLAST of NO13G01420 vs. NCBI_GenBank
Match: XP_005822987.1 (hypothetical protein GUITHDRAFT_155334 [Guillardia theta CCMP2712] >EKX36007.1 hypothetical protein GUITHDRAFT_155334 [Guillardia theta CCMP2712]) HSP 1 Score: 72.0 bits (175), Expect = 4.200e-9 Identity = 72/255 (28.24%), Postives = 115/255 (45.10%), Query Frame = 0 Query: 73 GSRVAIDGADAPGESNTLARLITKKLFKSQMRPYLLVPS--MDKVPTGLGFDQYKGLTRYLCTAAVDEKKGGDGKIPLEIDGLVLCSEMGYTSKQVRELLERVEDEEGDKDKRETAGGTGEKKGLKRVVMLSSLGVIRREDVIWKLKQFGVDLEKRYQAEQELISQAQRRGFTYTLIRVGPLRGGGGDEGLGFEFYDHRSSSKFQTLLKNPLSVLDDKDEHFDATKRGFTFSYEDNLVFGDTGRILAAETMIKAL 326 GSRVA+ P T +TK L + +P + VP DK P D + D+ +P+ + GLV+ +E S+Q+R L G +GL++VVM+S +GV R++++++K F + + K Y+ E+ L A +GF YT++R G L+GG FY+ S+ +FQ+ L+ L FD + F S D + G T R LA+ + +AL Sbjct: 48 GSRVAV----VPAYERT-GICVTKVLVDNSFKPVVQVPPGFTDKSPLRWPIDGFPNHVPEGVQLVNDQ-------LPV-VKGLVIATEDPADSQQLRYFL-------------------GGIQGLEKVVMMSRVGVDRKDELLFKFNPF-LKIGKWYEIEETLKQCAAEQGFDYTIVRTGQLQGG--------PFYN--SNREFQSALEGNL---------FDFEHQSFQVSLTDR-IDGSTSRDLASTALFEAL 249 The following BLAST results are available for this feature:
BLAST of NO13G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G01420 ID=NO13G01420|Name=NO13G01420|organism=Nannochloropsis oceanica|type=gene|length=2173bpback to top protein sequence of NO13G01420.1 >NO13G01420.1-protein ID=NO13G01420.1-protein|Name=NO13G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bpback to top Synonyms
Publications
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