NO13G01420.1, NO13G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01420.1
Unique NameNO13G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2002
Alignment locationchr13:429026..431198 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:429026..431198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01420.1 vs.
Match: EWM21799.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 447.6 bits (1150), Expect = 3.700e-122
Identity = 238/363 (65.56%), Postives = 284/363 (78.24%), Query Frame = 0 
Query:    1 MPLSVPASSFLVLVLATILPFLSHVQAFSSPSRLPSQHSPYDRRPPTIPPSSPAT-----EDRGSNLYRPLNPLLGPGSRVAIDGADAPGESNTLARLITKKLFKSQMRPYLLVPSMDKVPTGLGFDQYKGLTRYLCTAAVDEKKGGDGKIPLEIDGLVLCSEMGYTSKQVRELLERVED-EEGDKDKRETAGGTGEKKGLKRVVMLSSLGVIRREDVIWKLKQFGVDLEKRYQAEQELISQAQRRGFTYTLIRVGPLRGGGGDEGLGFEFYDHRSSSKFQTLLKNPL-SVLDDKDEHFDATKRGFTFSYEDNLVFGDTGRILAAETMIKALGSAHVEDVALSLVSEQGRTWPNFQVAPWDLF 357
            MP +    +  + +   I+  +  V+AFSS SR P   SPYDRR P I PS+P T     + RGSNLYRP NPLLGPGSRVAIDGA+APGE +TLARLIT KLFKSQMRPYL++PS+ KVPTGLGFDQY+GL+RY+CTA VD+ K GDG+ P EIDGLVLCSE GYT+  +R +L RV+D +E  +   E+    GEK GLKRVVMLSSLGV RRED++WK+ QFGVDLE R+QAEQELI+QA RRGFTYTLIRVGPLRGGGG+EGLG +FY+ ++  +   L  NP  S+   +DE FD T+RGFTFSY DN + G+TGR+LAAET +KALGSAHVEDVA++LVSEQGRTWPNFQVAPWDLF
Sbjct:    6 MPPAYMQFATKICLFLGIISVIRPVRAFSS-SRSPPPQSPYDRRSPPINPSTPPTHADLEQGRGSNLYRPFNPLLGPGSRVAIDGANAPGEGSTLARLITIKLFKSQMRPYLVIPSLSKVPTGLGFDQYRGLSRYICTAPVDKMKEGDGRFPPEIDGLVLCSERGYTAHDIRAILARVDDGKEESRGGIESRAEAGEKTGLKRVVMLSSLGVNRREDMMWKIWQFGVDLEARHQAEQELIAQAHRRGFTYTLIRVGPLRGGGGEEGLGNDFYE-QNEGRHHPL--NPFPSLAAKRDEAFDLTRRGFTFSYCDN-IQGETGRVLAAETFVKALGSAHVEDVAIALVSEQGRTWPNFQVAPWDLF 363
The following BLAST results are available for this feature:
BLAST of NO13G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21799.13.700e-12265.56NAD(P)-binding domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01420NO13G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01420.1NO13G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01420.1.cds1NO13G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01420.1.cds2NO13G01420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01420.1 ID=NO13G01420.1|Name=NO13G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp
CGGCAATTCTGTCCGTGTCAAAACCCCCTTTTATTTGCCCTCGAACTAGA
TGTCTACACAATGTGCCACCAGACTGCACACAGTAGCTCGCCACGTATTT
CTCATCGAAAATCTGCCTGCGACGCACCCGCACTTATATTGATCGCGGAG
TCTCAATCTGCTCTACAACGCAAGGCAGGGCGGCAGAAGACGAAGGCGGC
AGAATTGCTTGACATCTGATGAACACCATATTCCAACCAAACACATAGGC
CGTGTCAATATGCCATTGTCAGTGCCAGCGTCCTCATTCCTTGTGCTGGT
CCTTGCCACTATCCTCCCCTTCCTTTCCCATGTCCAAGCTTTTTCCTCCC
CCAGCCGGCTACCCTCGCAGCACTCTCCATATGACCGCCGTCCCCCTACT
ATTCCGCCTTCTAGCCCCGCCACCGAAGACCGCGGCAGTAATTTGTATCG
ACCGCTCAATCCTCTGCTGGGACCAGGAAGCCGAGTGGCGATTGACGGCG
CCGATGCCCCTGGAGAGAGCAATACTCTCGCGAGGCTTATTACAAAGAAG
CTATTCAAGTCACAAATGAGGCCTTATTTACTTGTACCCTCCATGGACAA
AGTGCCCACAGGCCTAGGATTTGATCAGTATAAGGGGCTAACTCGTTACT
TATGCACGGCAGCGGTGGATGAGAAGAAAGGGGGGGATGGTAAAATACCT
TTGGAGATTGATGGGTTAGTCTTATGCTCGGAAATGGGGTATACTTCCAA
GCAAGTTCGCGAGCTGCTGGAACGCGTAGAGGATGAGGAGGGGGACAAGG
ACAAGAGGGAGACAGCTGGAGGGACAGGGGAGAAAAAGGGGCTGAAGAGG
GTGGTGATGTTGTCGAGCTTGGGCGTGATTCGACGGGAGGATGTCATTTG
GAAATTGAAGCAGTTTGGGGTGGACCTGGAGAAGAGGTACCAAGCCGAGC
AAGAGCTCATCTCGCAAGCCCAACGGCGCGGTTTCACATATACCCTCATT
CGGGTAGGACCTTTGCGAGGCGGTGGGGGTGATGAAGGCCTGGGATTTGA
ATTCTATGACCACCGGTCATCTTCCAAATTTCAAACTCTTTTGAAAAATC
CTCTTTCCGTCCTGGATGATAAAGACGAGCACTTCGATGCGACCAAGCGA
GGCTTTACTTTCTCCTACGAGGATAATCTTGTCTTTGGCGACACTGGGAG
AATTCTAGCGGCGGAGACGATGATTAAGGCCTTGGGGTCGGCGCACGTTG
AGGACGTGGCGCTATCACTGGTGAGTGAACAGGGACGGACATGGCCAAAC
TTTCAGGTGGCGCCCTGGGACTTGTTTTAAGCGGTGGGTAGGACGGGAGG
AAAGGCGTCTTTTTCTACCACACTCATAGTTAAGAGGACGAAGATGAGCG
GAGGGGATGAGGAACGAAGGAAGATACATAGCGCGTTGGATGCCGTTCCA
GGTGCGCATTTTTGGGGGGGTAATTGAACCGTACAGGCGGGTGTCTAGGT
GTCTGCGTATCTGTGCGTCTGTCCAATGTTTGGATGTGTGTAATTGTGTG
TAAGAAGTGTGTTTTACTGAGATGCTGCTTGTCTGTAATTCTCTATTGGG
TGTTCCCGATCGTGTACATCCCCTGTGAACCCCAAAAAATGAAAAGACAG
AGAAGGGCGAACCACAAGCAGTAGAATCCATACGTCGAAAAAAACCAAAG
GTTTCTCTCCAGAAGTAAATAAATGGTCAGGGTAGGAAGGCGCCGAGAAA
CTGATAATATAAAAAGGGAGAGGCAGAGACGGACAGAGGCTATGTTTGAT
ATAAAAAGAATTAGAGAAAATCAGAGAAACAGAAAGAGACACCAGAGAGG
GTCAGAGCGAGACAGAGACGTAGAAAGAGACTATGTAGAACACGAACGCG
CTAATTTGCAGGTAAAGAGTGTTTTTTTTTTAAACGAGAAGGAAGACCCC
CCAAAAAGAAAGGAACTGATATGCGAGAGGCGACAAGGAAGGCCTGCGAG
AC
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protein sequence of NO13G01420.1

>NO13G01420.1-protein ID=NO13G01420.1-protein|Name=NO13G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MPLSVPASSFLVLVLATILPFLSHVQAFSSPSRLPSQHSPYDRRPPTIPP
SSPATEDRGSNLYRPLNPLLGPGSRVAIDGADAPGESNTLARLITKKLFK
SQMRPYLLVPSMDKVPTGLGFDQYKGLTRYLCTAAVDEKKGGDGKIPLEI
DGLVLCSEMGYTSKQVRELLERVEDEEGDKDKRETAGGTGEKKGLKRVVM
LSSLGVIRREDVIWKLKQFGVDLEKRYQAEQELISQAQRRGFTYTLIRVG
PLRGGGGDEGLGFEFYDHRSSSKFQTLLKNPLSVLDDKDEHFDATKRGFT
FSYEDNLVFGDTGRILAAETMIKALGSAHVEDVALSLVSEQGRTWPNFQV
APWDLF*
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mRNA from alignment at chr13:429026..431198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01420.1 ID=NO13G01420.1|Name=NO13G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp|location=Sequence derived from alignment at chr13:429026..431198- (Nannochloropsis oceanica)
CGGCAATTCTGTCCGTGTCAAAACCCCCTTTTATTTGCCCTCGAACTAGA
TGTCTACACAATGTGCCACCAGACTGCACACAGTAGCTCGCCACGTATTT
CTCATCGAAAATCTGCCTGCGACGCACCCGCACTTATATTGATCGCGGAG
TCTCAATCTGCTCTACAACGCAAGGCAGGGCGGCAGAAGACGAAGGCGGC
AGAATTGCTTGACATCTGATGAACACCATATTCCAACCAAACACATAGGC
CGTGTCAATATGCCATTGTCAGTGCCAGCGTCCTCATTCCTTGTGCTGGT
CCTTGCCACTATCCTCCCCTTCCTTTCCCATGTCCAAGCTTTTTCCTCCC
CCAGCCGGCTACCCTCGCAGCACTCTCCATATGACCGCCGTCCCCCTACT
ATTCCGCCTTCTAGCCCCGCCACCGAAGACCGCGGCAGTAATTTGTATCG
ACCGCTCAATCCTCTGCTGGGACCAGGAAGCCGAGTGGCGATTGACGGCG
CCGATGCCCCTGGAGAGAGCAATACTCTCGCGAGGCTTATTACAAAGAAG
CTATTCAAGTCACAAATGAGGCCTTATTTACTTGTACCCTCCATGGACAA
AGTGCCCACAGGCCTAGGATTTGATCAGTATAAGGGGCTAACTCGTTACT
TATGCACGGCAGCGGTGGATGAGAAGAAAGGGGGGGATGGTAAAATACCT
TTGGAGATTGATGGGTTAGTCTTATGCTCGGAAATGGGGTATACTTCCAA
GCAAGTTCGCGAGCTGCTGGAACGCGTAGAGGATGAGGAGGGGGACAAGG
ACAAGAGGGAGACAGCTGGAGGGACAGGGGAGAAAAAGGGGCTGAAGAGG
GTGGTGATGTTGTCGAGCTTGGGCGTGATTCGACGGGAGGATGTCATTTG
GAAATTGAAGCAGTTTGGGGTGGACCTGGAGAAGAGGGTGAGTTAAATCC
GTGGGTGGAGGATGGGTGGAAAGGATGGCAGGAGAGTAGCACTTACAAGC
TCGTGAATGTTGTGCTTTTTAGGACGTATTTCTATTCATCGCACACGCCG
CTCATCTTCCTTGTTTCCTCCCTCCCTCCCTCCCCCTCTCGTTCCAACCC
AAAAAAAGTACCAAGCCGAGCAAGAGCTCATCTCGCAAGCCCAACGGCGC
GGTTTCACATATACCCTCATTCGGGTAGGACCTTTGCGAGGCGGTGGGGG
TGATGAAGGCCTGGGATTTGAATTCTATGACCACCGGTCATCTTCCAAAT
TTCAAACTCTTTTGAAAAATCCTCTTTCCGTCCTGGATGATAAAGACGAG
CACTTCGATGCGACCAAGCGAGGCTTTACTTTCTCCTACGAGGATAATCT
TGTCTTTGGCGACACTGGGAGAATTCTAGCGGCGGAGACGATGATTAAGG
CCTTGGGGTCGGCGCACGTTGAGGACGTGGCGCTATCACTGGTGAGTGAA
CAGGGACGGACATGGCCAAACTTTCAGGTGGCGCCCTGGGACTTGTTTTA
AGCGGTGGGTAGGACGGGAGGAAAGGCGTCTTTTTCTACCACACTCATAG
TTAAGAGGACGAAGATGAGCGGAGGGGATGAGGAACGAAGGAAGATACAT
AGCGCGTTGGATGCCGTTCCAGGTGCGCATTTTTGGGGGGGTAATTGAAC
CGTACAGGCGGGTGTCTAGGTGTCTGCGTATCTGTGCGTCTGTCCAATGT
TTGGATGTGTGTAATTGTGTGTAAGAAGTGTGTTTTACTGAGATGCTGCT
TGTCTGTAATTCTCTATTGGGTGTTCCCGATCGTGTACATCCCCTGTGAA
CCCCAAAAAATGAAAAGACAGAGAAGGGCGAACCACAAGCAGTAGAATCC
ATACGTCGAAAAAAACCAAAGGTTTCTCTCCAGAAGTAAATAAATGGTCA
GGGTAGGAAGGCGCCGAGAAACTGATAATATAAAAAGGGAGAGGCAGAGA
CGGACAGAGGCTATGTTTGATATAAAAAGAATTAGAGAAAATCAGAGAAA
CAGAAAGAGACACCAGAGAGGGTCAGAGCGAGACAGAGACGTAGAAAGAG
ACTATGTAGAACACGAACGCGCTAATTTGCAGGTAAAGAGTGTTTTTTTT
TTAAACGAGAAGGAAGACCCCCCAAAAAGAAAGGAACTGATATGCGAGAG
GCGACAAGGAAGGCCTGCGAGAC
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Coding sequence (CDS) from alignment at chr13:429026..431198-

>NO13G01420.1 ID=NO13G01420.1|Name=NO13G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr13:429026..431198- (Nannochloropsis oceanica)
ATGCCATTGTCAGTGCCAGCGTCCTCATTCCTTGTGCTGGTCCTTGCCAC
TATCCTCCCCTTCCTTTCCCATGTCCAAGCTTTTTCCTCCCCCAGCCGGC
TACCCTCGCAGCACTCTCCATATGACCGCCGTCCCCCTACTATTCCGCCT
TCTAGCCCCGCCACCGAAGACCGCGGCAGTAATTTGTATCGACCGCTCAA
TCCTCTGCTGGGACCAGGAAGCCGAGTGGCGATTGACGGCGCCGATGCCC
CTGGAGAGAGCAATACTCTCGCGAGGCTTATTACAAAGAAGCTATTCAAG
TCACAAATGAGGCCTTATTTACTTGTACCCTCCATGGACAAAGTGCCCAC
AGGCCTAGGATTTGATCAGTATAAGGGGCTAACTCGTTACTTATGCACGG
CAGCGGTGGATGAGAAGAAAGGGGGGGATGGTAAAATACCTTTGGAGATT
GATGGGTTAGTCTTATGCTCGGAAATGGGGTATACTTCCAAGCAAGTTCG
CGAGCTGCTGGAACGCGTAGAGGATGAGGAGGGGGACAAGGACAAGAGGG
AGACAGCTGGAGGGACAGGGGAGAAAAAGGGGCTGAAGAGGGTGGTGATG
TTGTCGAGCTTGGGCGTGATTCGACGGGAGGATGTCATTTGGAAATTGAA
GCAGTTTGGGGTGGACCTGGAGAAGAGGTACCAAGCCGAGCAAGAGCTCA
TCTCGCAAGCCCAACGGCGCGGTTTCACATATACCCTCATTCGGGTAGGA
CCTTTGCGAGGCGGTGGGGGTGATGAAGGCCTGGGATTTGAATTCTATGA
CCACCGGTCATCTTCCAAATTTCAAACTCTTTTGAAAAATCCTCTTTCCG
TCCTGGATGATAAAGACGAGCACTTCGATGCGACCAAGCGAGGCTTTACT
TTCTCCTACGAGGATAATCTTGTCTTTGGCGACACTGGGAGAATTCTAGC
GGCGGAGACGATGATTAAGGCCTTGGGGTCGGCGCACGTTGAGGACGTGG
CGCTATCACTGGTGAGTGAACAGGGACGGACATGGCCAAACTTTCAGGTG
GCGCCCTGGGACTTGTTTTAA
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Synonyms
Publications