NO13G01410, NO13G01410 (gene) Nannochloropsis oceanica

Overview
NameNO13G01410
Unique NameNO13G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr13:428068..428859 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:428068..428859 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO13G01410 vs. NCBI_GenBank
Match: XP_005853661.1 (hypothetical protein NGA_0273602 [Nannochloropsis gaditana CCMP526] >EKU22702.1 hypothetical protein NGA_0273602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.5 bits (402), Expect = 5.200e-36
Identity = 74/93 (79.57%), Postives = 86/93 (92.47%), Query Frame = 0 
Query:    1 MGKKSDVVLPAREHTAREERKDVVAWVKGREARAREEAIAIEMVKNLREKVSWCQREHPVTHYYDCADIVGQYLKLVKDPLRGVQVPDAAAEE 94
            MGKKSDVVLPARE+   E R D+VAW KGREARAREEAIAIEMVKNLR++VSWCQR+HPVTHYYDCA++VG+YLKLV+DPLRGV++P AA+EE
Sbjct:    1 MGKKSDVVLPAREYAPLEARTDIVAWTKGREARAREEAIAIEMVKNLRDQVSWCQRKHPVTHYYDCAELVGKYLKLVRDPLRGVKLPGAASEE 93
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BLAST of NO13G01410 vs. NCBI_GenBank
Match: CBJ31013.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 63.9 bits (154), Expect = 3.000e-7
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 0 
Query:    5 SDVVLPAREHTAREERKDVVAWVKGREARAREEAIAIEMVKNLREKVSWCQREHPVTHYYDCADIVGQYLKLVKDPLRG-VQVPDAAAE 93
            SD  L    H  + +R D VAW   RE   RE  IA E VK LR++V  C R+  V HY +C  +  +YL++++D   G ++ P A A+
Sbjct:   12 SDATLQPYPHVPKSDRSDPVAWANSREQFMREHLIAKERVKLLRQEVIACYRKEGVNHYVNCKHLTTKYLEIIQDKTFGRLKPPGAGAD 100
The following BLAST results are available for this feature:
BLAST of NO13G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853661.15.200e-3679.57hypothetical protein NGA_0273602 [Nannochloropsis ... [more]
CBJ31013.13.000e-738.20conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001753NSK001753Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01410.1NO13G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596602gene_6868Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01410.1NO13G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01410 ID=NO13G01410|Name=NO13G01410|organism=Nannochloropsis oceanica|type=gene|length=792bp
ATGGGAAAGAAGTCTGACGTGGTGCTGCCGGCCCGGGAGCACACTGCACG
GGAGGAACGGAAGGACGTCGTCGCCTGGGTCAAGGGACGCGAGGCACGgt
acgttgatgaggtattgcatgtatggcgagaggaggagcaaggagacgcc
ttggacgtgtgcgtgattgccatttcacgctgcaccaatagtctgttagt
acgttgcgccatgagtctgtttttgtcgtgcgtctcatgtagctggtata
gcgagccctttgattctgcgtaggtagtacgaaaacgttagcttcacctc
tctctgggcgtcgtgccgccgccatcccacatgttcccataaatcaacat
acgttcacacctataaaaacaaagTGCGCGGGAAGAGGCCATAGCCATCG
AGATGGTGAAGAACTTGCGTGAGAAGGTCTCATGGTGCCAACGGGAGCAC
CCCGTGACTCACTACTATGACTGCGCCGACATTGTCGGCCAGTACCTTAA
GCTGGTGAAGgtgagaaggatggagggaaggagagcgaaaaggaggaaag
gagaaaataaaagattgatgcatgcggtccggttgaaagcgatgcgtctt
ttaagtcattcccatgtccgggatgctggacaaggctacgcgaggcttga
gaggctcattttccccttccctccaacacccatacaccccctttctcttt
gattttacaccactaaaacacacactctctctacgctctttcagGACCCG
TTGCGTGGCGTGCAGGTACCAGACGCGGCAGCCGAGGAGTAG
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protein sequence of NO13G01410.1

>NO13G01410.1-protein ID=NO13G01410.1-protein|Name=NO13G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MGKKSDVVLPAREHTAREERKDVVAWVKGREARAREEAIAIEMVKNLREK
VSWCQREHPVTHYYDCADIVGQYLKLVKDPLRGVQVPDAAAEE*
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Synonyms
Publications