NO13G01410.1, NO13G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01410.1
Unique NameNO13G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length282
Alignment locationchr13:428068..428859 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:428068..428859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01410.1 vs.
Match: XP_005853661.1 (hypothetical protein NGA_0273602 [Nannochloropsis gaditana CCMP526]; EKU22702.1 hypothetical protein NGA_0273602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.5 bits (402), Expect = 5.200e-36
Identity = 74/93 (79.57%), Postives = 86/93 (92.47%), Query Frame = 0 
Query:    1 MGKKSDVVLPAREHTAREERKDVVAWVKGREARAREEAIAIEMVKNLREKVSWCQREHPVTHYYDCADIVGQYLKLVKDPLRGVQVPDAAAEE 94
            MGKKSDVVLPARE+   E R D+VAW KGREARAREEAIAIEMVKNLR++VSWCQR+HPVTHYYDCA++VG+YLKLV+DPLRGV++P AA+EE
Sbjct:    1 MGKKSDVVLPAREYAPLEARTDIVAWTKGREARAREEAIAIEMVKNLRDQVSWCQRKHPVTHYYDCAELVGKYLKLVRDPLRGVKLPGAASEE 93
The following BLAST results are available for this feature:
BLAST of NO13G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853661.15.200e-3679.57hypothetical protein NGA_0273602 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01410NO13G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01410.1NO13G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01410.1.cds1NO13G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01410.1.cds2NO13G01410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01410.1.cds3NO13G01410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01410.1 ID=NO13G01410.1|Name=NO13G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=282bp
ATGGGAAAGAAGTCTGACGTGGTGCTGCCGGCCCGGGAGCACACTGCACG
GGAGGAACGGAAGGACGTCGTCGCCTGGGTCAAGGGACGCGAGGCACGTG
CGCGGGAAGAGGCCATAGCCATCGAGATGGTGAAGAACTTGCGTGAGAAG
GTCTCATGGTGCCAACGGGAGCACCCCGTGACTCACTACTATGACTGCGC
CGACATTGTCGGCCAGTACCTTAAGCTGGTGAAGGACCCGTTGCGTGGCG
TGCAGGTACCAGACGCGGCAGCCGAGGAGTAG
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protein sequence of NO13G01410.1

>NO13G01410.1-protein ID=NO13G01410.1-protein|Name=NO13G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MGKKSDVVLPAREHTAREERKDVVAWVKGREARAREEAIAIEMVKNLREK
VSWCQREHPVTHYYDCADIVGQYLKLVKDPLRGVQVPDAAAEE*
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mRNA from alignment at chr13:428068..428859+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01410.1 ID=NO13G01410.1|Name=NO13G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp|location=Sequence derived from alignment at chr13:428068..428859+ (Nannochloropsis oceanica)
ATGGGAAAGAAGTCTGACGTGGTGCTGCCGGCCCGGGAGCACACTGCACG
GGAGGAACGGAAGGACGTCGTCGCCTGGGTCAAGGGACGCGAGGCACGGT
ACGTTGATGAGGTATTGCATGTATGGCGAGAGGAGGAGCAAGGAGACGCC
TTGGACGTGTGCGTGATTGCCATTTCACGCTGCACCAATAGTCTGTTAGT
ACGTTGCGCCATGAGTCTGTTTTTGTCGTGCGTCTCATGTAGCTGGTATA
GCGAGCCCTTTGATTCTGCGTAGGTAGTACGAAAACGTTAGCTTCACCTC
TCTCTGGGCGTCGTGCCGCCGCCATCCCACATGTTCCCATAAATCAACAT
ACGTTCACACCTATAAAAACAAAGTGCGCGGGAAGAGGCCATAGCCATCG
AGATGGTGAAGAACTTGCGTGAGAAGGTCTCATGGTGCCAACGGGAGCAC
CCCGTGACTCACTACTATGACTGCGCCGACATTGTCGGCCAGTACCTTAA
GCTGGTGAAGGTGAGAAGGATGGAGGGAAGGAGAGCGAAAAGGAGGAAAG
GAGAAAATAAAAGATTGATGCATGCGGTCCGGTTGAAAGCGATGCGTCTT
TTAAGTCATTCCCATGTCCGGGATGCTGGACAAGGCTACGCGAGGCTTGA
GAGGCTCATTTTCCCCTTCCCTCCAACACCCATACACCCCCTTTCTCTTT
GATTTTACACCACTAAAACACACACTCTCTCTACGCTCTTTCAGGACCCG
TTGCGTGGCGTGCAGGTACCAGACGCGGCAGCCGAGGAGTAG
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Coding sequence (CDS) from alignment at chr13:428068..428859+

>NO13G01410.1 ID=NO13G01410.1|Name=NO13G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at chr13:428068..428859+ (Nannochloropsis oceanica)
ATGGGAAAGAAGTCTGACGTGGTGCTGCCGGCCCGGGAGCACACTGCACG
GGAGGAACGGAAGGACGTCGTCGCCTGGGTCAAGGGACGCGAGGCACGTG
CGCGGGAAGAGGCCATAGCCATCGAGATGGTGAAGAACTTGCGTGAGAAG
GTCTCATGGTGCCAACGGGAGCACCCCGTGACTCACTACTATGACTGCGC
CGACATTGTCGGCCAGTACCTTAAGCTGGTGAAGGACCCGTTGCGTGGCG
TGCAGGTACCAGACGCGGCAGCCGAGGAGTAG
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Synonyms
Publications