NO13G01380, NO13G01380 (gene) Nannochloropsis oceanica

Overview
NameNO13G01380
Unique NameNO13G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1752
Alignment locationchr13:421675..423426 -

Link to JBrowse

Properties
Property NameValue
DescriptionSugar fermentation stimulation protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:421675..423426 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005224SfsA
Homology
BLAST of NO13G01380 vs. NCBI_GenBank
Match: EWM21800.1 (Sugar fermentation stimulation protein [Nannochloropsis gaditana])

HSP 1 Score: 446.8 bits (1148), Expect = 9.700e-122
Identity = 218/279 (78.14%), Postives = 248/279 (88.89%), Query Frame = 0
Query:  275 ILLHTLPKLYFATVVHRPSKVCKSPYLCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVLHHVVKREDDGTSHWIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVTMGNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAACEEAPNAYGKVAIFPDGYRKKVADPVSPRALKHVQELELIAQEGGKRACLLFVSQRTDVASFVVASTDVQYRAAVQKAANNGVVLKAFSVRWDGATGRAYLHTELPIVW 554
            +LLHTLPKL+ ATV+HR SK  KSPYLCDIQ+ G  +LT+ HTPSLGCSGLV+ GA +LVS+ST  SST KS+HVLHHV++ E DGTSHW+GTHPMTAN+LA+ALL  GHVFP+LP +E ++KEVTMGNSRFDFV TH+DGS+TVVETKNVPVADNFDGTKKERAALLAAC   P+AY K+AIFPDGYRKKV+DPVSPRALKHVQELE IA+EG KRACLLF+SQRTDVASFVV STD+QYR AV+KA  NGVVLKAFSVRWDGA+GRA+LH ELPIVW
Sbjct:  216 VLLHTLPKLFTATVMHRTSKEVKSPYLCDIQLAGAETLTLCHTPSLGCSGLVTTGATILVSQST--SSTAKSSHVLHHVLQAEADGTSHWVGTHPMTANVLAQALLEEGHVFPSLPRIETLRKEVTMGNSRFDFVATHADGSVTVVETKNVPVADNFDGTKKERAALLAACITPPDAYHKIAIFPDGYRKKVSDPVSPRALKHVQELEAIAREGEKRACLLFISQRTDVASFVVTSTDMQYRTAVRKAGENGVVLKAFSVRWDGASGRAFLHRELPIVW 492          
BLAST of NO13G01380 vs. NCBI_GenBank
Match: CEM08569.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 127.9 bits (320), Expect = 9.900e-26
Identity = 89/297 (29.97%), Postives = 144/297 (48.48%), Query Frame = 0
Query:  271 SNTPILLHTLPKLYFATVVHRPSKVCKSPYLCDIQVKGQTSL-----------TMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVLHHVVKREDDGTSHWIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVTMGNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAACEEAPNAYGKVAIFPDGYRKKVADPVSPRALKHVQEL-ELIAQEGGK-RACLLFVSQRTDVASF-VVASTDVQYRAAVQKAANNGVVLKAFSVRWDGATGRAYLHTELPIVW 554
            S  P+L   L  L    +V RPS V K+PY+ D+++  Q ++             AH PSL C+G++ PG++V ++ S S     K++H +    +    G    +G HP  A  + + +L   H+ P L    + + +VT G +R DFV+ + +G    +E KN   AD  +G      + +     +   Y   AIFP G +K     VS RA+KH  EL  ++ +   K RA +LF+  R+D   F      D+ +   +++A   GV L A+ + WDG  GRA     +P+V+
Sbjct:   63 SGEPLL--DLGDLLTGRIVKRPSAVIKTPYVADVRILEQDAMGNVTCDESADPLQAHCPSLDCAGMIVPGSQVRMTPSASGKG--KTSHTIWLAEEPRPMGEVASVGAHPQLAERMVKTML-ERHMIPELAGYSSFRTQVTHGKARVDFVLDYPNGDELFLEVKNCVCADYPEGQVPSERSSIGVYTSSVQPYRCCAIFPHGAKKPKIKVVSDRAIKHAHELTNMVKRTTSKPRAAILFIVNRSDTLQFRPCHEADMLFAQVLKRAHEAGVQLLAYRIAWDG--GRARSGGSIPVVF 352          
BLAST of NO13G01380 vs. NCBI_GenBank
Match: GAX14287.1 (hypothetical protein FisN_1Hh483 [Fistulifera solaris])

HSP 1 Score: 111.3 bits (277), Expect = 9.600e-21
Identity = 92/300 (30.67%), Postives = 134/300 (44.67%), Query Frame = 0
Query:  282 KLYFATVVHRPSKVCKSPYLCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVL-----------HHVVKREDDGTSH-------WIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVTMGNSRFDFVVTHSDGSLTVVETKNVPVADNF-DGTKKERAALLAACEEAPNAYGKVAIFPDGYRKKVADP----VSPRALKHVQELELIAQEGGKRACLLFVSQRTDVASF-VVASTDVQYRAAVQKAANNGVVLKAFSVRW---DGATGRAYLH-TELPIVW 554
            +L  A +V RPSK  +SPY+ DI +     + +AH P+L   G   PG  +LV  +T K         +           H  +   D+   H       W+G HP     +AE  +        L PVE+V+++VT+GN R DF +TH DGS  +VE K V   D + +    +           P  Y + AIFP G  K+        VS RA+ HV+EL  + +E   +A +LFV  R D  +F   A +   +   ++ A   GV + A  V W   D   G  +   +ELPI W
Sbjct:   60 ELVLAKMVARPSKRNRSPYVADIALIDSGRVAIAHVPNLDMGGKCIPGCTLLVKAATDKKGNKIGADAVSPKYGTPKCEFHAQLLLVDESNLHPKLYPPTWVGAHPNLGERIAECWIRNN----VLGPVESVKRQVTIGNMRSDFEITHKDGSKRLVEVKQVVDTDYYVEAPPSDTMKCRFLSSRVP--YRRTAIFPWGNSKQKGPDGEAVVSARAINHVRELTRLVEERQYKATVLFVVVRGDAEAFRPNADSCPSFAKYLRLAEQAGVQVLAKRVMWGEKDHELGSCFDDPSELPIEW 353          
BLAST of NO13G01380 vs. NCBI_GenBank
Match: PNW71781.1 (hypothetical protein CHLRE_16g682013v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 105.9 bits (263), Expect = 4.000e-19
Identity = 101/350 (28.86%), Postives = 146/350 (41.71%), Query Frame = 0
Query:  280 LPKLYFATVVHRPSKVCKSPYLCDIQV----------------------KGQT------SLTMAHTPSLGCSGLVSPGAEVLVSESTSKS---STTKSTHVLHHVVKREDDGTSHWIGTHPMTANILA---------EALLIGGHVFPNLPPVENVQKEVTMGNSRFDFVVTHSDGSLTVVETKNVPVADNFD---GTKKERAALLAACEEAPNA----YGKVAIFPDGYRKKVADPVSPRALKHVQELELIAQEGGK----------------------------RACLLFVSQRTDVASFVVASTDVQYRAAVQKAANN-GVVLKAFSVRWDGATGRAYLHTELPIVW 554
            L +L    ++ RPS   K+PY+ DIQ+                       G T       L +AH P++ C+G+V+PGA V +S+S  ++       ++H +  V  +   GT+  +G HP  A  LA         EA L  G V         ++ + T GN+R D+V+   DGS  ++E KNV  AD  D   G    R A+       P+     Y   A+FP G +K     VS RA+KHV EL  + + G +                               +LF+  R+D A+F          A V KAA   GV L A+ V W G  G AY    LP+V+
Sbjct:  233 LGQLVAGKLIRRPSASVKTPYVADIQLLPPXXXSAHPDGEAGKDAAAAGAGVTEHGRVGELVLAHAPAMDCAGMVTPGATVYMSKSAPRAPGVPPAATSHAIQLVEDQRPSGTAAVVGYHPQLAERLAAELVRRRLLEAALGAGRVV-------GLESQRTFGNTRVDYVLRMEDGSRMLLEVKNVVCADFPDVPGGVPPGRPAVGVYKVPVPSGCLDDYSPTALFPHGAQKPKIKVVSDRAIKHVTELTALHKHGRELPEAGDDSXXXXXXXXXXXXXXXXXXXXXCAVLFLVNRSDCAAFRPCHEADPLFAQVLKAAEEAGVKLVAYDVVWRG--GAAYAGRHLPVVF 573          
BLAST of NO13G01380 vs. NCBI_GenBank
Match: GAX20036.1 (hypothetical protein FisN_1Lh483 [Fistulifera solaris])

HSP 1 Score: 105.5 bits (262), Expect = 5.300e-19
Identity = 91/300 (30.33%), Postives = 133/300 (44.33%), Query Frame = 0
Query:  282 KLYFATVVHRPSKVCKSPYLCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVL-----------HHVVKREDDGTSH-------WIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVTMGNSRFDFVVTHSDGSLTVVETKNVPVADNF-DGTKKERAALLAACEEAPNAYGKVAIFPDGYRKKVADP----VSPRALKHVQELELIAQEGGKRACLLFVSQRTDVASF-VVASTDVQYRAAVQKAANNGVVLKAFSVRW---DGATGRAYLH-TELPIVW 554
            +L  A +V RPSK  +SPY+ DI +       +AH P+L   G    G+ +LV  +T K         +           H  +   D+   H       W+G HP     +AE  +        L PVE+V+++VT+GN R DF +TH DGS  +VE K V   D + +    +           P  Y + AIFP G  K+        VS RA+ HV+EL  + +E   +A +LFV  R D   F   A +   +   +++A   GV + A  V W   D   G  +   +ELPI W
Sbjct:   95 ELVLAKMVARPSKRNRSPYVADIALIDSGREAIAHVPNLDMGGKCISGSILLVKAATDKKGNKIGADAVSPKYGTPKCEFHTQLLLVDESNLHPKLYPPTWVGAHPNLGERIAECWIRNN----VLGPVESVKRQVTIGNMRSDFEITHKDGSKRLVEVKQVVDTDYYVEAPPPDTMKCRFLSSRVP--YRRTAIFPWGNSKQKGPDGEAVVSARAINHVRELTRLVEERQYKATVLFVVVRGDAEVFRPNAHSCPSFAKYLRQAEQAGVQVLAKRVMWGEKDHELGSCFDDPSELPIEW 388          
BLAST of NO13G01380 vs. NCBI_GenBank
Match: XP_001699203.1 (hypothetical protein CHLREDRAFT_206136 [Chlamydomonas reinhardtii])

HSP 1 Score: 104.8 bits (260), Expect = 9.000e-19
Identity = 99/342 (28.95%), Postives = 143/342 (41.81%), Query Frame = 0
Query:  288 VVHRPSKVCKSPYLCDIQV----------------------KGQT------SLTMAHTPSLGCSGLVSPGAEVLVSESTSKS---STTKSTHVLHHVVKREDDGTSHWIGTHPMTANILA---------EALLIGGHVFPNLPPVENVQKEVTMGNSRFDFVVTHSDGSLTVVETKNVPVADNFD---GTKKERAALLAACEEAPNA----YGKVAIFPDGYRKKVADPVSPRALKHVQELELIAQEGGK----------------------------RACLLFVSQRTDVASFVVASTDVQYRAAVQKAANN-GVVLKAFSVRWDGATGRAYLHTELPIVW 554
            ++ RPS   K+PY+ DIQ+                       G T       L +AH P++ C+G+V+PGA V +S+S  ++       ++H +  V  +   GT+  +G HP  A  LA         EA L  G V         ++ + T GN+R D+V+   DGS  ++E KNV  AD  D   G    R A+       P+     Y   A+FP G +K     VS RA+KHV EL  + + G +                               +LF+  R+D A+F          A V KAA   GV L A+ V W G  G AY    LP+V+
Sbjct:   69 LIRRPSASVKTPYVADIQLLPPXXXSAHPDGEAGKDAAAAGAGVTEHGRVGELVLAHAPAMDCAGMVTPGATVYMSKSAPRAPGVPPAATSHAIQLVEDQRPSGTAAVVGYHPQLAERLAAELVRRRLLEAALGAGRVV-------GLESQRTFGNTRVDYVLRMEDGSRMLLEVKNVVCADFPDVPGGVPPGRPAVGVYKVPVPSGCLDDYSPTALFPHGAQKPKIKVVSDRAIKHVTELTALHKHGRELPEAGDDSXXXXXXXXXXXXXXXXXXXXXCAVLFLVNRSDCAAFRPCHEADPLFAQVLKAAEEAGVKLVAYDVVWRG--GAAYAGRHLPVVF 401          
BLAST of NO13G01380 vs. NCBI_GenBank
Match: GBG26320.1 (Hypothetical Protein FCC1311_025412 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 95.1 bits (235), Expect = 7.100e-16
Identity = 97/322 (30.12%), Postives = 140/322 (43.48%), Query Frame = 0
Query:  288 VVHRPSKVCKSPYLCDIQ-VKGQTSLTMAHTPSLGCSGLVSPGAEVLVSE--------------STSKSSTTKSTHVLHHVVKREDDGTSHW--IGTHPMTA-NILAEALLIGGHVFPNLPPVENVQKEVTMGNSRFDFVVTH------------------------SDGSLTVVETKNVPVADNF-------DGTKKERAALLAAC--EEAPNAYGKVAIFP-DGYRKKVADPVSPRALKHVQELELI-----AQEGGKRACLLFVSQRTDVASFVVASTDVQYRAAV-QKAANNGVVLKAFSVRWDGATGRAYLHTELPI 552
            V+ RPSK  ++PY+ D+Q + G  S+  AH+PSLGC+G+VSPG  V ++E                    T+ S  + H   +    G      +G  P  A N + +AL  G   F    P   V K+ T G SR DFV+ +                        +    T++E KNV  AD          G + E    LA+C  +    A  + A+FP  G RK     +S RA+KHV EL  +       E    + ++FV  R+D   F  A       A V  +A+  GV L A++V WD A+G AYL   +P+
Sbjct:    6 VLARPSKRVRTPYVADVQLLDGTDSVVQAHSPSLGCAGMVSPGRIVEMTEVXXXXXXXXXXXXXXXXXXKTSHSVCLCHDAPRVGGLGGMQGPVVGALPALAENFVLKALEEGW--FAEFAPGYTVTKQKTYGGSRVDFVLNYEGEGEKKEEKNKQDAAKSDVTQGATSPRKTLIEVKNVVCADYLPGENPISTGMEGELEPRLASCLQDTQTGALLRAAVFPHGGTRKPKIKVLSSRAIKHVHELTQLHLSRRLGEENLDSAMIFVVNRSDCERFRPAHESCPLFARVLYEASLAGVRLLAYTVDWDLASGCAYLGHRIPV 325          
BLAST of NO13G01380 vs. NCBI_GenBank
Match: XP_003083037.1 (Sugar fermentation stimulation protein [Ostreococcus tauri] >CAL56992.1 Sugar fermentation stimulation protein [Ostreococcus tauri])

HSP 1 Score: 94.7 bits (234), Expect = 9.300e-16
Identity = 86/298 (28.86%), Postives = 131/298 (43.96%), Query Frame = 0
Query:  288 VVHRPSKVCKSPYLCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKST------HVLHHVVKREDDGTSH----WIGTHPMTANILAEALLIGGHVFPNL--PPVE--NVQKEVTM---------GNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAA----CEEAPNAYGKVAIFPDGYRKKVA----DPVSPRALKHVQELELIAQEGGKRACLLFVSQRTDVASF-VVASTDVQYRAAVQKAANNGVVLKAFSVRWDGA--TGRAYLHTELPI 552
            VV RPS    SPY+ D++     ++ +AH P+L   G    GAEVL S      + T  T       ++  +++ E+   +     W+  HP     +A+ L+ GG +   L   PVE   V  + TM          N R DFV+ H DGS T++E K V   D      +ERA L A            Y +  IFP G R +      + VS RA++H++EL  +A++      +LF+  R DV  F    +    +   ++ A + GV +    V W      G+A+    LPI
Sbjct:   53 VVRRPSARNASPYVADVERGETKTIAIAHAPNLDSGGKFRAGAEVLCSRQPGVDANTLGTRGKPKCELVTRLLRCEERENAALGGVWVSAHPSLVEKIAKGLIEGGALDARLHGSPVERDGVSAQTTMKRRKTESASNNYRPDFVLNHKDGSRTILEVKQVVDTDYSREFVEERARLQAPHPVYSPSGSAPYARAGIFPWGKRGQKGPDGENVVSARAIEHLRELTELAKDPNVHPVILFICSRADVEGFRPNGAACPSFAKYLELAQHAGVRILVQKVCWGEGEDLGKAFDAGPLPI 350          
BLAST of NO13G01380 vs. NCBI_GenBank
Match: XP_005767809.1 (hypothetical protein EMIHUDRAFT_436816 [Emiliania huxleyi CCMP1516] >EOD15380.1 hypothetical protein EMIHUDRAFT_436816 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 91.7 bits (226), Expect = 7.900e-15
Identity = 89/300 (29.67%), Postives = 131/300 (43.67%), Query Frame = 0
Query:  288 VVHRPSKVCKSPYLCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSS-------------TTKSTHVLHHVVKREDDGTSH-----WIGTHPMTANILAEALLIGGHVFPNLPPVENVQKE---VTMGNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAACEEAPN----------AYGKVAIFPDGYRKKVADP----VSPRALKHVQELELIAQ--------EGGK-------RACLLFVSQRTDVASF-VVASTDVQYRAAVQKAANNGVVLKAFSVRW 537
            V+ RPS   KSPY+ D+Q+     + +AH PS+   G   PGA VL+     K++             T K   +L  +   E +  S      W+G HP      A AL+ GG +   L  +  +++E   V   + R DF++TH D S T++E K V V  ++D         ++  E  PN           Y + AIFP G   +        VS RA+KHV+EL  IA+        EG K       RAC+LF+  R+D   F         +   +++A   GV + A  VRW
Sbjct:   60 VLRRPSARNKSPYVGDVQL-SDGRVAIAHMPSMDMGGKCVPGAAVLLKTQIDKATKLPIGPDVVGKYGTPKCEFILKLLRCTEPENASAAGGGCWVGAHPSLGEKAANALIAGGSLESELGEIAKIEREVPNVAGTDMRCDFLLTHRDRSKTILEVKTV-VDTDYD-------PAISPPERFPNRKCVFLGKGSPYARAAIFPWGNSNQKGPDGEKVVSARAIKHVRELTAIARGEKREAPPEGTKAESSPPLRACVLFIVVRSDATYFRPNEEACPSFARYLREAQQAGVRVLARRVRW 350          
BLAST of NO13G01380 vs. NCBI_GenBank
Match: OUS46006.1 (hypothetical protein BE221DRAFT_206129 [Ostreococcus tauri])

HSP 1 Score: 91.3 bits (225), Expect = 1.000e-14
Identity = 87/298 (29.19%), Postives = 131/298 (43.96%), Query Frame = 0
Query:  288 VVHRPSKVCKSPYLCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKST------HVLHHVVKREDDGTSH----WIGTHPMTANILAEALLIGGHVFPNL--PPVE--NVQKEVTM---------GNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAA----CEEAPNAYGKVAIFPDGYR-KKVAD---PVSPRALKHVQELELIAQEGGKRACLLFVSQRTDVASF-VVASTDVQYRAAVQKAANNGVVLKAFSVRWDGA--TGRAYLHTELPI 552
            VV RPS    SPY+ D++     ++ +AH P+L   G    GAEVL S      + T  T       ++  +++ E+   +     W+  HP     +A+ L+ GG +   L   PVE   V  + TM          N R D V+ H DGS T++E K V   D      +ERA L A            Y +  IFP G R +K  D    VS RA++H++EL  +A++      +LF+  R DV  F    +    +   ++ A + GV +    V W      G+A+    LPI
Sbjct:   53 VVRRPSARNASPYVADVERGETKTIAIAHAPNLDSGGKFRAGAEVLCSRQPGVDANTLGTRGKPKCELVTRLLRCEERENAALGGVWVSAHPSLVEKIAKGLIEGGALDARLHGSPVERDGVSAQTTMKRRKTESASNNYRPDSVLNHKDGSRTILEVKQVVDTDYSREFVEERARLQAPHPVYSPSGSAPYARAGIFPWGKRGQKGPDGEKVVSARAIEHLRELTELAKDPNVHPVILFICSRADVEGFRPNGAACPSFAKYLELAQHAGVRILVQKVCWGEGEDLGKAFDAGPLPI 350          
The following BLAST results are available for this feature:
BLAST of NO13G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21800.19.700e-12278.14Sugar fermentation stimulation protein [Nannochlor... [more]
CEM08569.19.900e-2629.97unnamed protein product [Vitrella brassicaformis C... [more]
GAX14287.19.600e-2130.67hypothetical protein FisN_1Hh483 [Fistulifera sola... [more]
PNW71781.14.000e-1928.86hypothetical protein CHLRE_16g682013v5 [Chlamydomo... [more]
GAX20036.15.300e-1930.33hypothetical protein FisN_1Lh483 [Fistulifera sola... [more]
XP_001699203.19.000e-1928.95hypothetical protein CHLREDRAFT_206136 [Chlamydomo... [more]
GBG26320.17.100e-1630.12Hypothetical Protein FCC1311_025412 [Aurantiochytr... [more]
XP_003083037.19.300e-1628.86Sugar fermentation stimulation protein [Ostreococc... [more]
XP_005767809.17.900e-1529.67hypothetical protein EMIHUDRAFT_436816 [Emiliania ... [more]
OUS46006.11.000e-1429.19hypothetical protein BE221DRAFT_206129 [Ostreococc... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001756NSK001756Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01380.1NO13G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596616gene_6871Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100065g24gene8627Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01380.1NO13G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01380 ID=NO13G01380|Name=NO13G01380|organism=Nannochloropsis oceanica|type=gene|length=1752bp
ATGCACACAGCGTCACCGCGAGGGTCTTGTTGCTTCCATATCGCAACCGC
CATCATTATCCTGTCCCGCGTCGTTGTGCTCAGGGCGTTCTTGCTCGGCG
TTTCTTCAGgtacgcgggggcttacgtggcaagtggaggaggagaggtcg
tctcttttaaactatcagtgctgattgcgcctacgtcccttacttacagT
CCAACGCTCGTCATCACCGTCGTCGTCGTCTGCAGCAGCAGTAGCCTTCG
CAATCATGCCCAAGAGGTTTAAAGCCAGCAGCGGCGGCAGCAGCGGCAGC
ACCAGCATCAGCACCAACACCAACACCAACACCAACACCTCCATCAACAA
CAACAACGGCGGCGGTGACGATTCCATATCATCGTCTGCGGTATCCTCGT
CGCGGCGGCGCAAGCATGAGATTGTATATGGTGCCGTTGTACCGAAAGCT
CTTACCTTAGCAGCCAAGCAAGCCGCTGCGTCTGGTGCTGTAACCTCTGC
TGTAGCGAAAGAGACGGCGCTTGCGACGACGACTAGAAGGGCAAGGGCTG
TCGAGAGCACGACCAGTGACGCTGCGTCCATGTCTACAGTTTCCCGTAGT
GCTGCTCCAAAGCGCGCCACCACTACCTCTGCCTCAGCTTCTTCCTCTCC
AGCCACTGCAGCTCCTAGCAGTACCTCTACGACCACAAAGACCCCCAAGA
AAAAGACGCAATCCGCCAGCACTTCCTCCATGTCCACTACTACTGCTATT
ACTACTGCTACAACAGCTACTTCAACCACAACTGCCACTCGCAATGCCAC
CAGCACGAGTTCCAAGAAAATAAAAACAATTCCGCTTCCCGTCCCCCCAG
CTATCGCCGCCGCCGCTCTCGCAGCCGCGCGTGCAAACGCCGCCGCTGTT
TCCAACACCCCCATCCTCCTCCACACACTTCCCAAATTGTATTTCGCCAC
GGTTGTGCACCGTCCATCGAAAGTGTGTAAATCGCCTTACCTCTGTGATA
TCCAAGTGAAGGGTCAGACATCCCTCACCATGGCACACACCCCCTCCCTC
GGGTGCTCTGGCCTAGTATCACCGGGCGCTGAGGTTTTGGTCAGTGAGTC
CACCTCCAAATCGAGCACTACCAAATCAACGCATGTGCTGCATCATGTCG
TGAAGAGAGAGGATGATGGGACGAGCCACTGGATTGGCACGCACCCCATG
ACGGCCAACATCTTGGCAGAAGCCTTGTTGATTGGGGGGCATGTTTTTCC
CAATCTCCCACCTGTGGAGAATGTGCAAAAAGAAGTTACCATGGGGAATT
CTCGCTTCGACTTCGTGGTTACGCATAGTGATGGAAGTTTAACTGTAGTC
GAAACGAAAAATGTCCCTGTTGCGGATAACTTCGATGGAACGAAAAAGGA
ACGTGCCGCGCTCTTGGCAGCGTGTGAGGAGGCTCCTAATGCATATGGGA
AGGTGGCCATTTTTCCTGATGGGTACAGGAAGAAGGTGGCAGACCCTGTG
TCTCCTCGTGCATTAAAACATGTTCAGGAGTTGGAGTTGATTGCCCAGGA
AGGAGGAAAGAGGGCGTGTCTTTTGTTTGTTTCCCAGCGGACAGACGTGG
CGTCGTTTGTGGTGGCCTCGACCGATGTGCAGTATCGAGCGGCGGTGCAA
AAAGCGGCGAACAATGGAGTGGTTCTAAAGGCTTTCAGTGTGCGGTGGGA
TGGGGCGACTGGTCGGGCGTACTTGCACACAGAACTTCCGATTGTGTGGT
AA
back to top

protein sequence of NO13G01380.1

>NO13G01380.1-protein ID=NO13G01380.1-protein|Name=NO13G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MHTASPRGSCCFHIATAIIILSRVVVLRAFLLGVSSVQRSSSPSSSSAAA
VAFAIMPKRFKASSGGSSGSTSISTNTNTNTNTSINNNNGGGDDSISSSA
VSSSRRRKHEIVYGAVVPKALTLAAKQAAASGAVTSAVAKETALATTTRR
ARAVESTTSDAASMSTVSRSAAPKRATTTSASASSSPATAAPSSTSTTTK
TPKKKTQSASTSSMSTTTAITTATTATSTTTATRNATSTSSKKIKTIPLP
VPPAIAAAALAAARANAAAVSNTPILLHTLPKLYFATVVHRPSKVCKSPY
LCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVL
HHVVKREDDGTSHWIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVT
MGNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAACEEAPN
AYGKVAIFPDGYRKKVADPVSPRALKHVQELELIAQEGGKRACLLFVSQR
TDVASFVVASTDVQYRAAVQKAANNGVVLKAFSVRWDGATGRAYLHTELP
IVW*
back to top
Synonyms
Publications