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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:421675..423426 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01380.1 vs.
Match: EWM21800.1 (Sugar fermentation stimulation protein [Nannochloropsis gaditana]) HSP 1 Score: 413.3 bits (1061), Expect = 1.200e-111 Identity = 266/470 (56.60%), Postives = 322/470 (68.51%), Query Frame = 0
Query: 97 SSSAVSSSRRRKHEIVYGAVVPKALTLAA-KQAAASGAVTSAVAKETALATTTRRAR---AVESTTSDAASMSTVSRS----AAPKRATTTSAS----ASSSPATAAPSSTSTTTKTPKKKTQSASTSSMSTTTAITTATTATSTTTATRNATSTSSKKIKTIPLPVPPAIAAAALAAARANA-AAVSNTPILLHTLPKLYFATVVHRPSKVCKSPYLCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVLHHVVKREDDGTSHWIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVTMGNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAACEEAPNAYGKVAIFPDGYRKKVADPVSPRALKHVQELELIAQEGGKRACLLFVSQRTDVASFVVASTDVQYRAAVQKAANNGVVLKAFSVRWDGATGRAYLHTELPIVW 554
S V+S+ R + I PKA L + S A A + E T R R + + T+ AAS S + A R T T AS+S A ++S T+ KK + AST+S + + + T AT+ + +P PP+ A A + RA+ A + + +LLHTLPKL+ ATV+HR SK KSPYLCDIQ+ G +LT+ HTPSLGCSGLV+ GA +LVS+STS ST KS+HVLHHV++ E DGTSHW+GTHPMTAN+LA+ALL GHVFP+LP +E ++KEVTMGNSRFDFV TH+DGS+TVVETKNVPVADNFDGTKKERAALLAAC P+AY K+AIFPDGYRKKV+DPVSPRALKHVQELE IA+EG KRACLLF+SQRTDVASFVV STD+QYR AV+KA NGVVLKAFSVRWDGA+GRA+LH ELPIVW
Sbjct: 25 SGRVVASTARVRRSISCMPATPKARVLVTCDRTRRSNAERDASSSEAGNPQTRCRKRDQVKIATVTAPAASDSFIGNDDKSPAVTYRKTRTKVEVADQASTSSKCALTVASSQPTRKAKKGRRQASTASDKGVISKSARSRREVAIGETSIATTEVVEGDDQSRVPAPPSNAFNATSLMRASTDTASAASAVLLHTLPKLFTATVMHRTSKEVKSPYLCDIQLAGAETLTLCHTPSLGCSGLVTTGATILVSQSTS--STAKSSHVLHHVLQAEADGTSHWVGTHPMTANVLAQALLEEGHVFPSLPRIETLRKEVTMGNSRFDFVATHADGSVTVVETKNVPVADNFDGTKKERAALLAACITPPDAYHKIAIFPDGYRKKVSDPVSPRALKHVQELEAIAREGEKRACLLFISQRTDVASFVVTSTDMQYRTAVRKAGENGVVLKAFSVRWDGASGRAFLHRELPIVW 492
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01380.1 ID=NO13G01380.1|Name=NO13G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp ATGCACACAGCGTCACCGCGAGGGTCTTGTTGCTTCCATATCGCAACCGC CATCATTATCCTGTCCCGCGTCGTTGTGCTCAGGGCGTTCTTGCTCGGCG TTTCTTCAGTCCAACGCTCGTCATCACCGTCGTCGTCGTCTGCAGCAGCA GTAGCCTTCGCAATCATGCCCAAGAGGTTTAAAGCCAGCAGCGGCGGCAG CAGCGGCAGCACCAGCATCAGCACCAACACCAACACCAACACCAACACCT CCATCAACAACAACAACGGCGGCGGTGACGATTCCATATCATCGTCTGCG GTATCCTCGTCGCGGCGGCGCAAGCATGAGATTGTATATGGTGCCGTTGT ACCGAAAGCTCTTACCTTAGCAGCCAAGCAAGCCGCTGCGTCTGGTGCTG TAACCTCTGCTGTAGCGAAAGAGACGGCGCTTGCGACGACGACTAGAAGG GCAAGGGCTGTCGAGAGCACGACCAGTGACGCTGCGTCCATGTCTACAGT TTCCCGTAGTGCTGCTCCAAAGCGCGCCACCACTACCTCTGCCTCAGCTT CTTCCTCTCCAGCCACTGCAGCTCCTAGCAGTACCTCTACGACCACAAAG ACCCCCAAGAAAAAGACGCAATCCGCCAGCACTTCCTCCATGTCCACTAC TACTGCTATTACTACTGCTACAACAGCTACTTCAACCACAACTGCCACTC GCAATGCCACCAGCACGAGTTCCAAGAAAATAAAAACAATTCCGCTTCCC GTCCCCCCAGCTATCGCCGCCGCCGCTCTCGCAGCCGCGCGTGCAAACGC CGCCGCTGTTTCCAACACCCCCATCCTCCTCCACACACTTCCCAAATTGT ATTTCGCCACGGTTGTGCACCGTCCATCGAAAGTGTGTAAATCGCCTTAC CTCTGTGATATCCAAGTGAAGGGTCAGACATCCCTCACCATGGCACACAC CCCCTCCCTCGGGTGCTCTGGCCTAGTATCACCGGGCGCTGAGGTTTTGG TCAGTGAGTCCACCTCCAAATCGAGCACTACCAAATCAACGCATGTGCTG CATCATGTCGTGAAGAGAGAGGATGATGGGACGAGCCACTGGATTGGCAC GCACCCCATGACGGCCAACATCTTGGCAGAAGCCTTGTTGATTGGGGGGC ATGTTTTTCCCAATCTCCCACCTGTGGAGAATGTGCAAAAAGAAGTTACC ATGGGGAATTCTCGCTTCGACTTCGTGGTTACGCATAGTGATGGAAGTTT AACTGTAGTCGAAACGAAAAATGTCCCTGTTGCGGATAACTTCGATGGAA CGAAAAAGGAACGTGCCGCGCTCTTGGCAGCGTGTGAGGAGGCTCCTAAT GCATATGGGAAGGTGGCCATTTTTCCTGATGGGTACAGGAAGAAGGTGGC AGACCCTGTGTCTCCTCGTGCATTAAAACATGTTCAGGAGTTGGAGTTGA TTGCCCAGGAAGGAGGAAAGAGGGCGTGTCTTTTGTTTGTTTCCCAGCGG ACAGACGTGGCGTCGTTTGTGGTGGCCTCGACCGATGTGCAGTATCGAGC GGCGGTGCAAAAAGCGGCGAACAATGGAGTGGTTCTAAAGGCTTTCAGTG TGCGGTGGGATGGGGCGACTGGTCGGGCGTACTTGCACACAGAACTTCCG ATTGTGTGGTAA back to topprotein sequence of NO13G01380.1 >NO13G01380.1-protein ID=NO13G01380.1-protein|Name=NO13G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp MHTASPRGSCCFHIATAIIILSRVVVLRAFLLGVSSVQRSSSPSSSSAAA VAFAIMPKRFKASSGGSSGSTSISTNTNTNTNTSINNNNGGGDDSISSSA VSSSRRRKHEIVYGAVVPKALTLAAKQAAASGAVTSAVAKETALATTTRR ARAVESTTSDAASMSTVSRSAAPKRATTTSASASSSPATAAPSSTSTTTK TPKKKTQSASTSSMSTTTAITTATTATSTTTATRNATSTSSKKIKTIPLP VPPAIAAAALAAARANAAAVSNTPILLHTLPKLYFATVVHRPSKVCKSPY LCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVL HHVVKREDDGTSHWIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVT MGNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAACEEAPN AYGKVAIFPDGYRKKVADPVSPRALKHVQELELIAQEGGKRACLLFVSQR TDVASFVVASTDVQYRAAVQKAANNGVVLKAFSVRWDGATGRAYLHTELP IVW* back to topmRNA from alignment at chr13:421675..423426- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01380.1 ID=NO13G01380.1|Name=NO13G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp|location=Sequence derived from alignment at chr13:421675..423426- (Nannochloropsis oceanica) ATGCACACAGCGTCACCGCGAGGGTCTTGTTGCTTCCATATCGCAACCGC
CATCATTATCCTGTCCCGCGTCGTTGTGCTCAGGGCGTTCTTGCTCGGCG
TTTCTTCAGGTACGCGGGGGCTTACGTGGCAAGTGGAGGAGGAGAGGTCG
TCTCTTTTAAACTATCAGTGCTGATTGCGCCTACGTCCCTTACTTACAGT
CCAACGCTCGTCATCACCGTCGTCGTCGTCTGCAGCAGCAGTAGCCTTCG
CAATCATGCCCAAGAGGTTTAAAGCCAGCAGCGGCGGCAGCAGCGGCAGC
ACCAGCATCAGCACCAACACCAACACCAACACCAACACCTCCATCAACAA
CAACAACGGCGGCGGTGACGATTCCATATCATCGTCTGCGGTATCCTCGT
CGCGGCGGCGCAAGCATGAGATTGTATATGGTGCCGTTGTACCGAAAGCT
CTTACCTTAGCAGCCAAGCAAGCCGCTGCGTCTGGTGCTGTAACCTCTGC
TGTAGCGAAAGAGACGGCGCTTGCGACGACGACTAGAAGGGCAAGGGCTG
TCGAGAGCACGACCAGTGACGCTGCGTCCATGTCTACAGTTTCCCGTAGT
GCTGCTCCAAAGCGCGCCACCACTACCTCTGCCTCAGCTTCTTCCTCTCC
AGCCACTGCAGCTCCTAGCAGTACCTCTACGACCACAAAGACCCCCAAGA
AAAAGACGCAATCCGCCAGCACTTCCTCCATGTCCACTACTACTGCTATT
ACTACTGCTACAACAGCTACTTCAACCACAACTGCCACTCGCAATGCCAC
CAGCACGAGTTCCAAGAAAATAAAAACAATTCCGCTTCCCGTCCCCCCAG
CTATCGCCGCCGCCGCTCTCGCAGCCGCGCGTGCAAACGCCGCCGCTGTT
TCCAACACCCCCATCCTCCTCCACACACTTCCCAAATTGTATTTCGCCAC
GGTTGTGCACCGTCCATCGAAAGTGTGTAAATCGCCTTACCTCTGTGATA
TCCAAGTGAAGGGTCAGACATCCCTCACCATGGCACACACCCCCTCCCTC
GGGTGCTCTGGCCTAGTATCACCGGGCGCTGAGGTTTTGGTCAGTGAGTC
CACCTCCAAATCGAGCACTACCAAATCAACGCATGTGCTGCATCATGTCG
TGAAGAGAGAGGATGATGGGACGAGCCACTGGATTGGCACGCACCCCATG
ACGGCCAACATCTTGGCAGAAGCCTTGTTGATTGGGGGGCATGTTTTTCC
CAATCTCCCACCTGTGGAGAATGTGCAAAAAGAAGTTACCATGGGGAATT
CTCGCTTCGACTTCGTGGTTACGCATAGTGATGGAAGTTTAACTGTAGTC
GAAACGAAAAATGTCCCTGTTGCGGATAACTTCGATGGAACGAAAAAGGA
ACGTGCCGCGCTCTTGGCAGCGTGTGAGGAGGCTCCTAATGCATATGGGA
AGGTGGCCATTTTTCCTGATGGGTACAGGAAGAAGGTGGCAGACCCTGTG
TCTCCTCGTGCATTAAAACATGTTCAGGAGTTGGAGTTGATTGCCCAGGA
AGGAGGAAAGAGGGCGTGTCTTTTGTTTGTTTCCCAGCGGACAGACGTGG
CGTCGTTTGTGGTGGCCTCGACCGATGTGCAGTATCGAGCGGCGGTGCAA
AAAGCGGCGAACAATGGAGTGGTTCTAAAGGCTTTCAGTGTGCGGTGGGA
TGGGGCGACTGGTCGGGCGTACTTGCACACAGAACTTCCGATTGTGTGGT
AA back to topCoding sequence (CDS) from alignment at chr13:421675..423426- >NO13G01380.1 ID=NO13G01380.1|Name=NO13G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr13:421675..423426- (Nannochloropsis oceanica) ATGCACACAGCGTCACCGCGAGGGTCTTGTTGCTTCCATATCGCAACCGC CATCATTATCCTGTCCCGCGTCGTTGTGCTCAGGGCGTTCTTGCTCGGCG TTTCTTCAGTCCAACGCTCGTCATCACCGTCGTCGTCGTCTGCAGCAGCA GTAGCCTTCGCAATCATGCCCAAGAGGTTTAAAGCCAGCAGCGGCGGCAG CAGCGGCAGCACCAGCATCAGCACCAACACCAACACCAACACCAACACCT CCATCAACAACAACAACGGCGGCGGTGACGATTCCATATCATCGTCTGCG GTATCCTCGTCGCGGCGGCGCAAGCATGAGATTGTATATGGTGCCGTTGT ACCGAAAGCTCTTACCTTAGCAGCCAAGCAAGCCGCTGCGTCTGGTGCTG TAACCTCTGCTGTAGCGAAAGAGACGGCGCTTGCGACGACGACTAGAAGG GCAAGGGCTGTCGAGAGCACGACCAGTGACGCTGCGTCCATGTCTACAGT TTCCCGTAGTGCTGCTCCAAAGCGCGCCACCACTACCTCTGCCTCAGCTT CTTCCTCTCCAGCCACTGCAGCTCCTAGCAGTACCTCTACGACCACAAAG ACCCCCAAGAAAAAGACGCAATCCGCCAGCACTTCCTCCATGTCCACTAC TACTGCTATTACTACTGCTACAACAGCTACTTCAACCACAACTGCCACTC GCAATGCCACCAGCACGAGTTCCAAGAAAATAAAAACAATTCCGCTTCCC GTCCCCCCAGCTATCGCCGCCGCCGCTCTCGCAGCCGCGCGTGCAAACGC CGCCGCTGTTTCCAACACCCCCATCCTCCTCCACACACTTCCCAAATTGT ATTTCGCCACGGTTGTGCACCGTCCATCGAAAGTGTGTAAATCGCCTTAC CTCTGTGATATCCAAGTGAAGGGTCAGACATCCCTCACCATGGCACACAC CCCCTCCCTCGGGTGCTCTGGCCTAGTATCACCGGGCGCTGAGGTTTTGG TCAGTGAGTCCACCTCCAAATCGAGCACTACCAAATCAACGCATGTGCTG CATCATGTCGTGAAGAGAGAGGATGATGGGACGAGCCACTGGATTGGCAC GCACCCCATGACGGCCAACATCTTGGCAGAAGCCTTGTTGATTGGGGGGC ATGTTTTTCCCAATCTCCCACCTGTGGAGAATGTGCAAAAAGAAGTTACC ATGGGGAATTCTCGCTTCGACTTCGTGGTTACGCATAGTGATGGAAGTTT AACTGTAGTCGAAACGAAAAATGTCCCTGTTGCGGATAACTTCGATGGAA CGAAAAAGGAACGTGCCGCGCTCTTGGCAGCGTGTGAGGAGGCTCCTAAT GCATATGGGAAGGTGGCCATTTTTCCTGATGGGTACAGGAAGAAGGTGGC AGACCCTGTGTCTCCTCGTGCATTAAAACATGTTCAGGAGTTGGAGTTGA TTGCCCAGGAAGGAGGAAAGAGGGCGTGTCTTTTGTTTGTTTCCCAGCGG ACAGACGTGGCGTCGTTTGTGGTGGCCTCGACCGATGTGCAGTATCGAGC GGCGGTGCAAAAAGCGGCGAACAATGGAGTGGTTCTAAAGGCTTTCAGTG TGCGGTGGGATGGGGCGACTGGTCGGGCGTACTTGCACACAGAACTTCCG ATTGTGTGGTAA back to top
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