NO13G01380.1, NO13G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01380.1
Unique NameNO13G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1662
Alignment locationchr13:421675..423426 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:421675..423426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G01380.1 vs.
Match: EWM21800.1 (Sugar fermentation stimulation protein [Nannochloropsis gaditana])

HSP 1 Score: 413.3 bits (1061), Expect = 1.200e-111
Identity = 266/470 (56.60%), Postives = 322/470 (68.51%), Query Frame = 0
Query:   97 SSSAVSSSRRRKHEIVYGAVVPKALTLAA-KQAAASGAVTSAVAKETALATTTRRAR---AVESTTSDAASMSTVSRS----AAPKRATTTSAS----ASSSPATAAPSSTSTTTKTPKKKTQSASTSSMSTTTAITTATTATSTTTATRNATSTSSKKIKTIPLPVPPAIAAAALAAARANA-AAVSNTPILLHTLPKLYFATVVHRPSKVCKSPYLCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVLHHVVKREDDGTSHWIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVTMGNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAACEEAPNAYGKVAIFPDGYRKKVADPVSPRALKHVQELELIAQEGGKRACLLFVSQRTDVASFVVASTDVQYRAAVQKAANNGVVLKAFSVRWDGATGRAYLHTELPIVW 554
            S   V+S+ R +  I      PKA  L    +   S A   A + E     T  R R    + + T+ AAS S +       A   R T T       AS+S   A   ++S  T+  KK  + AST+S     + +  +        T  AT+   +      +P PP+ A  A +  RA+   A + + +LLHTLPKL+ ATV+HR SK  KSPYLCDIQ+ G  +LT+ HTPSLGCSGLV+ GA +LVS+STS  ST KS+HVLHHV++ E DGTSHW+GTHPMTAN+LA+ALL  GHVFP+LP +E ++KEVTMGNSRFDFV TH+DGS+TVVETKNVPVADNFDGTKKERAALLAAC   P+AY K+AIFPDGYRKKV+DPVSPRALKHVQELE IA+EG KRACLLF+SQRTDVASFVV STD+QYR AV+KA  NGVVLKAFSVRWDGA+GRA+LH ELPIVW
Sbjct:   25 SGRVVASTARVRRSISCMPATPKARVLVTCDRTRRSNAERDASSSEAGNPQTRCRKRDQVKIATVTAPAASDSFIGNDDKSPAVTYRKTRTKVEVADQASTSSKCALTVASSQPTRKAKKGRRQASTASDKGVISKSARSRREVAIGETSIATTEVVEGDDQSRVPAPPSNAFNATSLMRASTDTASAASAVLLHTLPKLFTATVMHRTSKEVKSPYLCDIQLAGAETLTLCHTPSLGCSGLVTTGATILVSQSTS--STAKSSHVLHHVLQAEADGTSHWVGTHPMTANVLAQALLEEGHVFPSLPRIETLRKEVTMGNSRFDFVATHADGSVTVVETKNVPVADNFDGTKKERAALLAACITPPDAYHKIAIFPDGYRKKVSDPVSPRALKHVQELEAIAREGEKRACLLFISQRTDVASFVVTSTDMQYRTAVRKAGENGVVLKAFSVRWDGASGRAFLHRELPIVW 492          
The following BLAST results are available for this feature:
BLAST of NO13G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21800.11.200e-11156.60Sugar fermentation stimulation protein [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01380NO13G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01380.1NO13G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01380.1.cds1NO13G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01380.1.cds2NO13G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01380.1 ID=NO13G01380.1|Name=NO13G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp
ATGCACACAGCGTCACCGCGAGGGTCTTGTTGCTTCCATATCGCAACCGC
CATCATTATCCTGTCCCGCGTCGTTGTGCTCAGGGCGTTCTTGCTCGGCG
TTTCTTCAGTCCAACGCTCGTCATCACCGTCGTCGTCGTCTGCAGCAGCA
GTAGCCTTCGCAATCATGCCCAAGAGGTTTAAAGCCAGCAGCGGCGGCAG
CAGCGGCAGCACCAGCATCAGCACCAACACCAACACCAACACCAACACCT
CCATCAACAACAACAACGGCGGCGGTGACGATTCCATATCATCGTCTGCG
GTATCCTCGTCGCGGCGGCGCAAGCATGAGATTGTATATGGTGCCGTTGT
ACCGAAAGCTCTTACCTTAGCAGCCAAGCAAGCCGCTGCGTCTGGTGCTG
TAACCTCTGCTGTAGCGAAAGAGACGGCGCTTGCGACGACGACTAGAAGG
GCAAGGGCTGTCGAGAGCACGACCAGTGACGCTGCGTCCATGTCTACAGT
TTCCCGTAGTGCTGCTCCAAAGCGCGCCACCACTACCTCTGCCTCAGCTT
CTTCCTCTCCAGCCACTGCAGCTCCTAGCAGTACCTCTACGACCACAAAG
ACCCCCAAGAAAAAGACGCAATCCGCCAGCACTTCCTCCATGTCCACTAC
TACTGCTATTACTACTGCTACAACAGCTACTTCAACCACAACTGCCACTC
GCAATGCCACCAGCACGAGTTCCAAGAAAATAAAAACAATTCCGCTTCCC
GTCCCCCCAGCTATCGCCGCCGCCGCTCTCGCAGCCGCGCGTGCAAACGC
CGCCGCTGTTTCCAACACCCCCATCCTCCTCCACACACTTCCCAAATTGT
ATTTCGCCACGGTTGTGCACCGTCCATCGAAAGTGTGTAAATCGCCTTAC
CTCTGTGATATCCAAGTGAAGGGTCAGACATCCCTCACCATGGCACACAC
CCCCTCCCTCGGGTGCTCTGGCCTAGTATCACCGGGCGCTGAGGTTTTGG
TCAGTGAGTCCACCTCCAAATCGAGCACTACCAAATCAACGCATGTGCTG
CATCATGTCGTGAAGAGAGAGGATGATGGGACGAGCCACTGGATTGGCAC
GCACCCCATGACGGCCAACATCTTGGCAGAAGCCTTGTTGATTGGGGGGC
ATGTTTTTCCCAATCTCCCACCTGTGGAGAATGTGCAAAAAGAAGTTACC
ATGGGGAATTCTCGCTTCGACTTCGTGGTTACGCATAGTGATGGAAGTTT
AACTGTAGTCGAAACGAAAAATGTCCCTGTTGCGGATAACTTCGATGGAA
CGAAAAAGGAACGTGCCGCGCTCTTGGCAGCGTGTGAGGAGGCTCCTAAT
GCATATGGGAAGGTGGCCATTTTTCCTGATGGGTACAGGAAGAAGGTGGC
AGACCCTGTGTCTCCTCGTGCATTAAAACATGTTCAGGAGTTGGAGTTGA
TTGCCCAGGAAGGAGGAAAGAGGGCGTGTCTTTTGTTTGTTTCCCAGCGG
ACAGACGTGGCGTCGTTTGTGGTGGCCTCGACCGATGTGCAGTATCGAGC
GGCGGTGCAAAAAGCGGCGAACAATGGAGTGGTTCTAAAGGCTTTCAGTG
TGCGGTGGGATGGGGCGACTGGTCGGGCGTACTTGCACACAGAACTTCCG
ATTGTGTGGTAA
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protein sequence of NO13G01380.1

>NO13G01380.1-protein ID=NO13G01380.1-protein|Name=NO13G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MHTASPRGSCCFHIATAIIILSRVVVLRAFLLGVSSVQRSSSPSSSSAAA
VAFAIMPKRFKASSGGSSGSTSISTNTNTNTNTSINNNNGGGDDSISSSA
VSSSRRRKHEIVYGAVVPKALTLAAKQAAASGAVTSAVAKETALATTTRR
ARAVESTTSDAASMSTVSRSAAPKRATTTSASASSSPATAAPSSTSTTTK
TPKKKTQSASTSSMSTTTAITTATTATSTTTATRNATSTSSKKIKTIPLP
VPPAIAAAALAAARANAAAVSNTPILLHTLPKLYFATVVHRPSKVCKSPY
LCDIQVKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVL
HHVVKREDDGTSHWIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVT
MGNSRFDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAACEEAPN
AYGKVAIFPDGYRKKVADPVSPRALKHVQELELIAQEGGKRACLLFVSQR
TDVASFVVASTDVQYRAAVQKAANNGVVLKAFSVRWDGATGRAYLHTELP
IVW*
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mRNA from alignment at chr13:421675..423426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01380.1 ID=NO13G01380.1|Name=NO13G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp|location=Sequence derived from alignment at chr13:421675..423426- (Nannochloropsis oceanica)
ATGCACACAGCGTCACCGCGAGGGTCTTGTTGCTTCCATATCGCAACCGC CATCATTATCCTGTCCCGCGTCGTTGTGCTCAGGGCGTTCTTGCTCGGCG TTTCTTCAGGTACGCGGGGGCTTACGTGGCAAGTGGAGGAGGAGAGGTCG TCTCTTTTAAACTATCAGTGCTGATTGCGCCTACGTCCCTTACTTACAGT CCAACGCTCGTCATCACCGTCGTCGTCGTCTGCAGCAGCAGTAGCCTTCG CAATCATGCCCAAGAGGTTTAAAGCCAGCAGCGGCGGCAGCAGCGGCAGC ACCAGCATCAGCACCAACACCAACACCAACACCAACACCTCCATCAACAA CAACAACGGCGGCGGTGACGATTCCATATCATCGTCTGCGGTATCCTCGT CGCGGCGGCGCAAGCATGAGATTGTATATGGTGCCGTTGTACCGAAAGCT CTTACCTTAGCAGCCAAGCAAGCCGCTGCGTCTGGTGCTGTAACCTCTGC TGTAGCGAAAGAGACGGCGCTTGCGACGACGACTAGAAGGGCAAGGGCTG TCGAGAGCACGACCAGTGACGCTGCGTCCATGTCTACAGTTTCCCGTAGT GCTGCTCCAAAGCGCGCCACCACTACCTCTGCCTCAGCTTCTTCCTCTCC AGCCACTGCAGCTCCTAGCAGTACCTCTACGACCACAAAGACCCCCAAGA AAAAGACGCAATCCGCCAGCACTTCCTCCATGTCCACTACTACTGCTATT ACTACTGCTACAACAGCTACTTCAACCACAACTGCCACTCGCAATGCCAC CAGCACGAGTTCCAAGAAAATAAAAACAATTCCGCTTCCCGTCCCCCCAG CTATCGCCGCCGCCGCTCTCGCAGCCGCGCGTGCAAACGCCGCCGCTGTT TCCAACACCCCCATCCTCCTCCACACACTTCCCAAATTGTATTTCGCCAC GGTTGTGCACCGTCCATCGAAAGTGTGTAAATCGCCTTACCTCTGTGATA TCCAAGTGAAGGGTCAGACATCCCTCACCATGGCACACACCCCCTCCCTC GGGTGCTCTGGCCTAGTATCACCGGGCGCTGAGGTTTTGGTCAGTGAGTC CACCTCCAAATCGAGCACTACCAAATCAACGCATGTGCTGCATCATGTCG TGAAGAGAGAGGATGATGGGACGAGCCACTGGATTGGCACGCACCCCATG ACGGCCAACATCTTGGCAGAAGCCTTGTTGATTGGGGGGCATGTTTTTCC CAATCTCCCACCTGTGGAGAATGTGCAAAAAGAAGTTACCATGGGGAATT CTCGCTTCGACTTCGTGGTTACGCATAGTGATGGAAGTTTAACTGTAGTC GAAACGAAAAATGTCCCTGTTGCGGATAACTTCGATGGAACGAAAAAGGA ACGTGCCGCGCTCTTGGCAGCGTGTGAGGAGGCTCCTAATGCATATGGGA AGGTGGCCATTTTTCCTGATGGGTACAGGAAGAAGGTGGCAGACCCTGTG TCTCCTCGTGCATTAAAACATGTTCAGGAGTTGGAGTTGATTGCCCAGGA AGGAGGAAAGAGGGCGTGTCTTTTGTTTGTTTCCCAGCGGACAGACGTGG CGTCGTTTGTGGTGGCCTCGACCGATGTGCAGTATCGAGCGGCGGTGCAA AAAGCGGCGAACAATGGAGTGGTTCTAAAGGCTTTCAGTGTGCGGTGGGA TGGGGCGACTGGTCGGGCGTACTTGCACACAGAACTTCCGATTGTGTGGT AA
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Coding sequence (CDS) from alignment at chr13:421675..423426-

>NO13G01380.1 ID=NO13G01380.1|Name=NO13G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr13:421675..423426- (Nannochloropsis oceanica)
ATGCACACAGCGTCACCGCGAGGGTCTTGTTGCTTCCATATCGCAACCGC
CATCATTATCCTGTCCCGCGTCGTTGTGCTCAGGGCGTTCTTGCTCGGCG
TTTCTTCAGTCCAACGCTCGTCATCACCGTCGTCGTCGTCTGCAGCAGCA
GTAGCCTTCGCAATCATGCCCAAGAGGTTTAAAGCCAGCAGCGGCGGCAG
CAGCGGCAGCACCAGCATCAGCACCAACACCAACACCAACACCAACACCT
CCATCAACAACAACAACGGCGGCGGTGACGATTCCATATCATCGTCTGCG
GTATCCTCGTCGCGGCGGCGCAAGCATGAGATTGTATATGGTGCCGTTGT
ACCGAAAGCTCTTACCTTAGCAGCCAAGCAAGCCGCTGCGTCTGGTGCTG
TAACCTCTGCTGTAGCGAAAGAGACGGCGCTTGCGACGACGACTAGAAGG
GCAAGGGCTGTCGAGAGCACGACCAGTGACGCTGCGTCCATGTCTACAGT
TTCCCGTAGTGCTGCTCCAAAGCGCGCCACCACTACCTCTGCCTCAGCTT
CTTCCTCTCCAGCCACTGCAGCTCCTAGCAGTACCTCTACGACCACAAAG
ACCCCCAAGAAAAAGACGCAATCCGCCAGCACTTCCTCCATGTCCACTAC
TACTGCTATTACTACTGCTACAACAGCTACTTCAACCACAACTGCCACTC
GCAATGCCACCAGCACGAGTTCCAAGAAAATAAAAACAATTCCGCTTCCC
GTCCCCCCAGCTATCGCCGCCGCCGCTCTCGCAGCCGCGCGTGCAAACGC
CGCCGCTGTTTCCAACACCCCCATCCTCCTCCACACACTTCCCAAATTGT
ATTTCGCCACGGTTGTGCACCGTCCATCGAAAGTGTGTAAATCGCCTTAC
CTCTGTGATATCCAAGTGAAGGGTCAGACATCCCTCACCATGGCACACAC
CCCCTCCCTCGGGTGCTCTGGCCTAGTATCACCGGGCGCTGAGGTTTTGG
TCAGTGAGTCCACCTCCAAATCGAGCACTACCAAATCAACGCATGTGCTG
CATCATGTCGTGAAGAGAGAGGATGATGGGACGAGCCACTGGATTGGCAC
GCACCCCATGACGGCCAACATCTTGGCAGAAGCCTTGTTGATTGGGGGGC
ATGTTTTTCCCAATCTCCCACCTGTGGAGAATGTGCAAAAAGAAGTTACC
ATGGGGAATTCTCGCTTCGACTTCGTGGTTACGCATAGTGATGGAAGTTT
AACTGTAGTCGAAACGAAAAATGTCCCTGTTGCGGATAACTTCGATGGAA
CGAAAAAGGAACGTGCCGCGCTCTTGGCAGCGTGTGAGGAGGCTCCTAAT
GCATATGGGAAGGTGGCCATTTTTCCTGATGGGTACAGGAAGAAGGTGGC
AGACCCTGTGTCTCCTCGTGCATTAAAACATGTTCAGGAGTTGGAGTTGA
TTGCCCAGGAAGGAGGAAAGAGGGCGTGTCTTTTGTTTGTTTCCCAGCGG
ACAGACGTGGCGTCGTTTGTGGTGGCCTCGACCGATGTGCAGTATCGAGC
GGCGGTGCAAAAAGCGGCGAACAATGGAGTGGTTCTAAAGGCTTTCAGTG
TGCGGTGGGATGGGGCGACTGGTCGGGCGTACTTGCACACAGAACTTCCG
ATTGTGTGGTAA
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Synonyms
Publications