NO13G01360, NO13G01360 (gene) Nannochloropsis oceanica

Overview
NameNO13G01360
Unique NameNO13G01360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length870
Alignment locationchr13:418330..419199 +

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Properties
Property NameValue
DescriptionSelw selh selenoprotein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:418330..419199 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR011893Selenoprotein_Rdx-typ
Homology
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: EWM21794.1 (selw selh selenoprotein [Nannochloropsis gaditana])

HSP 1 Score: 175.3 bits (443), Expect = 1.800e-40
Identity = 86/120 (71.67%), Postives = 98/120 (81.67%), Query Frame = 0 
Query:   60 TSTTLFSSPNPEQLSLQPRVELPIPQGYNRVEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSDVGE 180
            +ST L  +P   Q + + RV L +P  YNRVEISYC GCRWMLRAAWLAQELLTTFQDE+ EVAIQPVK PAGTFEVRLN R+LF RKA+GRFPE KE+KQLVRDV++P R+LGHSD  E
Sbjct:   66 SSTDLEQAP---QQASRDRVSLSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKE 182
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: OYZ41797.1 (selenoprotein [Methylotenera sp. 24-45-7] >OZA10046.1 selenoprotein [Methylotenera sp. 17-45-7] >OZA53534.1 selenoprotein [Methylophilales bacterium 39-45-7])

HSP 1 Score: 127.1 bits (318), Expect = 5.500e-26
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 0 
Query:   88 NRVEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSD 177
            N VEI+YC  CRW+LRAAWLAQELLTTF+ +L  VA++P     G FE+ LN +L+F+RK+ GRFPE+KE+KQL+RDVI+P RDLGHSD
Sbjct:    4 NNVEITYCTQCRWLLRAAWLAQELLTTFEQDLTSVALKP--GTGGIFEISLNGQLIFSRKSAGRFPESKEIKQLIRDVIDPQRDLGHSD 90
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: OGV76386.1 (selenoprotein [Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14])

HSP 1 Score: 124.8 bits (312), Expect = 2.700e-25
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 0 
Query:   90 VEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSD 177
            VEI+YC  CRW+LRAAWLAQELLTTF+ +L  VA++P     G F++ LN++L+F+RK  GRFPEAKEVKQLVRD I+P RDLGHSD
Sbjct:    6 VEITYCTQCRWLLRAAWLAQELLTTFEQDLTSVALKPGN--GGVFDITLNQQLIFSRKEAGRFPEAKEVKQLVRDYIDPNRDLGHSD 90
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: WP_089686624.1 (SelT/SelW/SelH family protein [Catalinimonas alkaloidigena] >SDM20273.1 selenoprotein W-related protein [Catalinimonas alkaloidigena])

HSP 1 Score: 124.4 bits (311), Expect = 3.600e-25
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 0 
Query:   89 RVEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSD 177
            RVEI YC  CRW+LRAAW+AQELLTTF+ EL EVA+ P     G FE+R ++ +LF+RKA GRFPEAKEVKQLVRD I P +DLGHSD
Sbjct:    4 RVEIEYCTQCRWLLRAAWIAQELLTTFEAELEEVALIP--GTGGIFEIRYHEHVLFSRKAAGRFPEAKEVKQLVRDQIAPDKDLGHSD 89
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: WP_013147129.1 (SelT/SelW/SelH family protein [Methylotenera versatilis] >ADI28813.1 conserved hypothetical protein [Methylotenera versatilis 301])

HSP 1 Score: 124.0 bits (310), Expect = 4.700e-25
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 0 
Query:   88 NRVEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSD 177
            + +EI+YC  CRW+LRAAWLAQELLTTF+ +L  V ++P  +  G FE+ LN++LLF+RK  GRFPEAKEVKQLVRD I+P RDLGHSD
Sbjct:    4 HNIEITYCTQCRWLLRAAWLAQELLTTFEQDLAGVTLRPGSN--GIFEISLNQKLLFSRKEAGRFPEAKEVKQLVRDCIDPERDLGHSD 90
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: OGT66471.1 (selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_01_FULL_47_190] >OGT77049.1 selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_12_47_11] >OGT78453.1 selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_47_50] >OGT84021.1 selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_47_76])

HSP 1 Score: 123.6 bits (309), Expect = 6.100e-25
Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = 0 
Query:   88 NRVEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSD 177
            +RVEI YC  CR++LRA W+AQELL TF  EL EVA+ P +   G FE+RLN +LLF+RKA GRFPE+KE+KQLVRDVI PG+DLGHSD
Sbjct:    8 HRVEIEYCTQCRFILRAGWMAQELLMTFAGELGEVALIPGQ--GGIFEIRLNGKLLFSRKAAGRFPESKEIKQLVRDVIAPGKDLGHSD 94
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: PKO47380.1 (selenoprotein [Betaproteobacteria bacterium HGW-Betaproteobacteria-22])

HSP 1 Score: 123.2 bits (308), Expect = 8.000e-25
Identity = 55/89 (61.80%), Postives = 72/89 (80.90%), Query Frame = 0 
Query:   88 NRVEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSD 177
            N VEI+YC  CRW+LRAAWLAQELLTTF+ +L  VA++P     GTF+++LN +L+F+RK  GRFPE+KE+KQ++RD I+P R LGHSD
Sbjct:    4 NLVEITYCTQCRWLLRAAWLAQELLTTFEQDLTSVALRP--GTGGTFDIKLNGQLIFSRKEAGRFPESKEIKQVIRDYIDPARSLGHSD 90
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: WP_025871162.1 (SelT/SelW/SelH family protein [Methylobacillus glycogenes])

HSP 1 Score: 122.9 bits (307), Expect = 1.000e-24
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 0 
Query:   90 VEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSD 177
            +EI YC  CRW+LRAAW+AQELLTTF  ++  V++ P     G FEVRLNK LL++RK +GRFPE+KE+KQL+RDVI+P RDLGHSD
Sbjct:    9 IEIEYCTQCRWLLRAAWMAQELLTTFDSDIGRVSLVP--GTGGIFEVRLNKTLLYSRKEQGRFPESKELKQLIRDVIDPERDLGHSD 93
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: WP_036302074.1 (SelT/SelW/SelH family protein [Methylotenera sp. L2L1])

HSP 1 Score: 122.9 bits (307), Expect = 1.000e-24
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 0 
Query:   90 VEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSD 177
            VEI+YC  CRW+LRAAWLAQELLTTF+ +L+ VA++P     G FEV LN  L+F+RK  GRFPEAKE+KQLVRD ++P R LGHSD
Sbjct:    6 VEITYCTQCRWLLRAAWLAQELLTTFEQDLYSVALKP--GTGGVFEVTLNDELIFSRKEAGRFPEAKEIKQLVRDKVDPARHLGHSD 90
[Close]
BLAST of NO13G01360 vs. NCBI_GenBank
Match: OUU88701.1 (selenoprotein [Verrucomicrobia bacterium TMED71])

HSP 1 Score: 122.9 bits (307), Expect = 1.000e-24
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 0 
Query:   89 RVEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSD 177
            R+ I YC  CRWM+RAAWLAQE+LTTF +E+ EVA+QP     G  E+RLN  LL++RK EGRFPEAKEVKQL+RD I P RDLGHSD
Sbjct:    8 RISILYCRQCRWMMRAAWLAQEVLTTFSEEIGEVALQP--GTDGVLEIRLNGDLLYSRKTEGRFPEAKEVKQLIRDRIAPQRDLGHSD 93
The following BLAST results are available for this feature:
BLAST of NO13G01360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21794.11.800e-4071.67selw selh selenoprotein [Nannochloropsis gaditana][more]
OYZ41797.15.500e-2665.17selenoprotein [Methylotenera sp. 24-45-7] >OZA1004... [more]
OGV76386.12.700e-2566.67selenoprotein [Methylotenera sp. RIFCSPLOWO2_02_FU... [more]
WP_089686624.13.600e-2568.18SelT/SelW/SelH family protein [Catalinimonas alkal... [more]
WP_013147129.14.700e-2565.17SelT/SelW/SelH family protein [Methylotenera versa... [more]
OGT66471.16.100e-2567.42selenoprotein [Gammaproteobacteria bacterium RIFCS... [more]
PKO47380.18.000e-2561.80selenoprotein [Betaproteobacteria bacterium HGW-Be... [more]
WP_025871162.11.000e-2464.37SelT/SelW/SelH family protein [Methylobacillus gly... [more]
WP_036302074.11.000e-2465.52SelT/SelW/SelH family protein [Methylotenera sp. L... [more]
OUU88701.11.000e-2467.05selenoprotein [Verrucomicrobia bacterium TMED71][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001758NSK001758Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01360.1NO13G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596624gene_6873Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100065g22gene8629Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01360.1NO13G01360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01360 ID=NO13G01360|Name=NO13G01360|organism=Nannochloropsis oceanica|type=gene|length=870bp
GGCAAATATTGAACGGGCATGTCTTCTTCTGACTACTGTCTCTCACCCTC
TACACTCTAAATACACAGGTAGATCATGCTGCGACCACCTTGGCATCGTC
CTCACCTGTCTCTCTCCTGTGTTTCCATCTTGACTCTCATCCTTCTGCAC
CAGTCTAGgtaagatgagcttactcccttgccttaatctttgacccatca
tgacactgccatgacacaaggatgcacaggaaggccaaagctcacattca
aagtggtgaacccccaatcacacaatacgatgacagTGCATTCAATATAC
TCTCCGGCGTCCCAGCCACCATCTATGCAAGACCCATTGCCACCCCCCGC
CACTCCAACCTCCTGCACACAACCATCACCACCAGCACCACCCTCTTCTC
TTCACCAAACCCTGAGCAGCTGTCACTACAACCTCGCGTCGAACTCCCCA
TACCACAAGGATACAATAGGGTAGAAATCAGCTATTGTATTGGATGTAGG
TGGATGCTCCGGGCTGCTTGGCTTGCCCAAGAGCTTCTCACGACCTTCCA
AGACGAGCTTCACGAAGTAGCCATCCAGCCTGTCAAACACCCGGCGGGGA
CTTTCGAAGTCCGACTCAATAAGCGGTTGCTGTTTGCTCGCAAGGCGGAG
GGTCGTTTTCCCGAAGCGAAAGAGGTCAAGCAGCTGGTGCGGGACGTAAT
CAATCCTGGTCGCGATTTGGGGCATTCGGACGTAGGAGAAAAATAGACGA
AGCTGAGATAGTGAGATAGCAGAGGCTGTCTAAATAGACAGAGGTTTGAG
ACATACAGAAAAAAAGGAAGGAAACTCAACGTAGAAACCAGCACATTAAG
ATTAACGAGGACAAATGAGA
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protein sequence of NO13G01360.1

>NO13G01360.1-protein ID=NO13G01360.1-protein|Name=NO13G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MLRPPWHRPHLSLSCVSILTLILLHQSSAFNILSGVPATIYARPIATPRH
SNLLHTTITTSTTLFSSPNPEQLSLQPRVELPIPQGYNRVEISYCIGCRW
MLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEG
RFPEAKEVKQLVRDVINPGRDLGHSDVGEK*
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Synonyms
Publications