NO13G01360.1, NO13G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01360.1
Unique NameNO13G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length742
Alignment locationchr13:418330..419199 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:418330..419199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01360.1 vs.
Match: EWM21794.1 (selw selh selenoprotein [Nannochloropsis gaditana])

HSP 1 Score: 175.3 bits (443), Expect = 1.800e-40
Identity = 86/120 (71.67%), Postives = 98/120 (81.67%), Query Frame = 0 
Query:   60 TSTTLFSSPNPEQLSLQPRVELPIPQGYNRVEISYCIGCRWMLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAKEVKQLVRDVINPGRDLGHSDVGE 180
            +ST L  +P   Q + + RV L +P  YNRVEISYC GCRWMLRAAWLAQELLTTFQDE+ EVAIQPVK PAGTFEVRLN R+LF RKA+GRFPE KE+KQLVRDV++P R+LGHSD  E
Sbjct:   66 SSTDLEQAP---QQASRDRVSLSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKE 182
The following BLAST results are available for this feature:
BLAST of NO13G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21794.11.800e-4071.67selw selh selenoprotein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01360NO13G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01360.1NO13G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01360.1.cds1NO13G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01360.1.cds2NO13G01360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01360.1 ID=NO13G01360.1|Name=NO13G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=742bp
GGCAAATATTGAACGGGCATGTCTTCTTCTGACTACTGTCTCTCACCCTC
TACACTCTAAATACACAGGTAGATCATGCTGCGACCACCTTGGCATCGTC
CTCACCTGTCTCTCTCCTGTGTTTCCATCTTGACTCTCATCCTTCTGCAC
CAGTCTAGTGCATTCAATATACTCTCCGGCGTCCCAGCCACCATCTATGC
AAGACCCATTGCCACCCCCCGCCACTCCAACCTCCTGCACACAACCATCA
CCACCAGCACCACCCTCTTCTCTTCACCAAACCCTGAGCAGCTGTCACTA
CAACCTCGCGTCGAACTCCCCATACCACAAGGATACAATAGGGTAGAAAT
CAGCTATTGTATTGGATGTAGGTGGATGCTCCGGGCTGCTTGGCTTGCCC
AAGAGCTTCTCACGACCTTCCAAGACGAGCTTCACGAAGTAGCCATCCAG
CCTGTCAAACACCCGGCGGGGACTTTCGAAGTCCGACTCAATAAGCGGTT
GCTGTTTGCTCGCAAGGCGGAGGGTCGTTTTCCCGAAGCGAAAGAGGTCA
AGCAGCTGGTGCGGGACGTAATCAATCCTGGTCGCGATTTGGGGCATTCG
GACGTAGGAGAAAAATAGACGAAGCTGAGATAGTGAGATAGCAGAGGCTG
TCTAAATAGACAGAGGTTTGAGACATACAGAAAAAAAGGAAGGAAACTCA
ACGTAGAAACCAGCACATTAAGATTAACGAGGACAAATGAGA
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protein sequence of NO13G01360.1

>NO13G01360.1-protein ID=NO13G01360.1-protein|Name=NO13G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MLRPPWHRPHLSLSCVSILTLILLHQSSAFNILSGVPATIYARPIATPRH
SNLLHTTITTSTTLFSSPNPEQLSLQPRVELPIPQGYNRVEISYCIGCRW
MLRAAWLAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEG
RFPEAKEVKQLVRDVINPGRDLGHSDVGEK*
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mRNA from alignment at chr13:418330..419199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01360.1 ID=NO13G01360.1|Name=NO13G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=870bp|location=Sequence derived from alignment at chr13:418330..419199+ (Nannochloropsis oceanica)
GGCAAATATTGAACGGGCATGTCTTCTTCTGACTACTGTCTCTCACCCTC
TACACTCTAAATACACAGGTAGATCATGCTGCGACCACCTTGGCATCGTC
CTCACCTGTCTCTCTCCTGTGTTTCCATCTTGACTCTCATCCTTCTGCAC
CAGTCTAGGTAAGATGAGCTTACTCCCTTGCCTTAATCTTTGACCCATCA
TGACACTGCCATGACACAAGGATGCACAGGAAGGCCAAAGCTCACATTCA
AAGTGGTGAACCCCCAATCACACAATACGATGACAGTGCATTCAATATAC
TCTCCGGCGTCCCAGCCACCATCTATGCAAGACCCATTGCCACCCCCCGC
CACTCCAACCTCCTGCACACAACCATCACCACCAGCACCACCCTCTTCTC
TTCACCAAACCCTGAGCAGCTGTCACTACAACCTCGCGTCGAACTCCCCA
TACCACAAGGATACAATAGGGTAGAAATCAGCTATTGTATTGGATGTAGG
TGGATGCTCCGGGCTGCTTGGCTTGCCCAAGAGCTTCTCACGACCTTCCA
AGACGAGCTTCACGAAGTAGCCATCCAGCCTGTCAAACACCCGGCGGGGA
CTTTCGAAGTCCGACTCAATAAGCGGTTGCTGTTTGCTCGCAAGGCGGAG
GGTCGTTTTCCCGAAGCGAAAGAGGTCAAGCAGCTGGTGCGGGACGTAAT
CAATCCTGGTCGCGATTTGGGGCATTCGGACGTAGGAGAAAAATAGACGA
AGCTGAGATAGTGAGATAGCAGAGGCTGTCTAAATAGACAGAGGTTTGAG
ACATACAGAAAAAAAGGAAGGAAACTCAACGTAGAAACCAGCACATTAAG
ATTAACGAGGACAAATGAGA
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Coding sequence (CDS) from alignment at chr13:418330..419199+

>NO13G01360.1 ID=NO13G01360.1|Name=NO13G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr13:418330..419199+ (Nannochloropsis oceanica)
ATGCTGCGACCACCTTGGCATCGTCCTCACCTGTCTCTCTCCTGTGTTTC
CATCTTGACTCTCATCCTTCTGCACCAGTCTAGTGCATTCAATATACTCT
CCGGCGTCCCAGCCACCATCTATGCAAGACCCATTGCCACCCCCCGCCAC
TCCAACCTCCTGCACACAACCATCACCACCAGCACCACCCTCTTCTCTTC
ACCAAACCCTGAGCAGCTGTCACTACAACCTCGCGTCGAACTCCCCATAC
CACAAGGATACAATAGGGTAGAAATCAGCTATTGTATTGGATGTAGGTGG
ATGCTCCGGGCTGCTTGGCTTGCCCAAGAGCTTCTCACGACCTTCCAAGA
CGAGCTTCACGAAGTAGCCATCCAGCCTGTCAAACACCCGGCGGGGACTT
TCGAAGTCCGACTCAATAAGCGGTTGCTGTTTGCTCGCAAGGCGGAGGGT
CGTTTTCCCGAAGCGAAAGAGGTCAAGCAGCTGGTGCGGGACGTAATCAA
TCCTGGTCGCGATTTGGGGCATTCGGACGTAGGAGAAAAATAG
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Synonyms
Publications