NO13G01160, NO13G01160 (gene) Nannochloropsis oceanica

Overview
NameNO13G01160
Unique NameNO13G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1085
Alignment locationchr13:358830..359914 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:358830..359914 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021467DUF3119
Homology
BLAST of NO13G01160 vs. NCBI_GenBank
Match: EWM21798.1 (Protein of unknown function DUF3119 [Nannochloropsis gaditana])

HSP 1 Score: 319.3 bits (817), Expect = 8.200e-84
Identity = 161/204 (78.92%), Postives = 174/204 (85.29%), Query Frame = 0
Query:    1 MLSFRATLLVLLPAIAAGFLAPTPALS-----------TPARLTVTALNSWGGKKAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGEDGE-LSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENFRKYVPL 193
            ML+ R    +LLPA+AAGFL PTP+LS            PARL VTALNSWGGKK K   V VEPE+IAPDYRVAAGFFL GVGLA+PPLSNPGAG+PLA+IGAFLASRTQ+VRFVFDEEAMEVMTVG DG+ LSMERENFAVGGRNRW Y +FTNWEFYPS QVP+LVYFKETQTKPEGQIHFFPVIGNPA+LLENFRKYVPL
Sbjct:    1 MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPL 204          
BLAST of NO13G01160 vs. NCBI_GenBank
Match: XP_005852703.1 (hypothetical protein NGA_0681310 [Nannochloropsis gaditana CCMP526] >EKU23128.1 hypothetical protein NGA_0681310 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 318.5 bits (815), Expect = 1.400e-83
Identity = 161/204 (78.92%), Postives = 174/204 (85.29%), Query Frame = 0
Query:    1 MLSFRATLLVLLPAIAAGFLAPTPALS-----------TPARLTVTALNSWGGKKAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGEDGE-LSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENFRKYVPL 193
            ML+ R    +LLPA+AAGFL PTP+LS            PARL VTALNSWGGKK K   V VEPE+IAPDYRVAAGFFL GVGLA+PPLSNPGAG+PLA+IGAFLASRTQ+VRFVFDEEAMEVMTVG DG+ LSMERENFAVGGRNRW Y +FTNWEFYPS QVP+LVYFKETQTKPEGQIHFFPVIGNPA+LLENFRKYVPL
Sbjct:    1 MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYASFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPL 204          
BLAST of NO13G01160 vs. NCBI_GenBank
Match: CEM17412.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 163.7 bits (413), Expect = 5.800e-37
Identity = 84/152 (55.26%), Postives = 105/152 (69.08%), Query Frame = 0
Query:   43 KKAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGEDGE---LSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENFRKYVP 192
            KKA V+    E  ++ PD+R+AAGF   G  L +   +N  AGVP+ +IGAFLA +T RVRF FD +++EV  + +DG+   L+   +NFAVGG NRW Y+TFTNWE YPSP +PILVYFKETQT PEGQIHFFPVI N  KL E   +  P
Sbjct:   68 KKAAVSKAKYETVVVPPDFRLAAGFVAGGAALCL-AANNYAAGVPIGLIGAFLALQTTRVRFEFDADSLEVKILKKDGDAETLADSGDNFAVGGANRWKYDTFTNWEMYPSPSLPILVYFKETQTIPEGQIHFFPVIMNGRKLYEIMEERCP 218          
BLAST of NO13G01160 vs. NCBI_GenBank
Match: CBJ26326.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 138.7 bits (348), Expect = 2.000e-29
Identity = 74/163 (45.40%), Postives = 100/163 (61.35%), Query Frame = 0
Query:   29 PARLTVTALNSWGGKKAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENFRKYVP 192
            P+R   TA      ++ +   + +   ++  D+++  G  +A  GLA+  L N GAG P++V+G  LA +  RV+F FD+ AMEV       EL    EN  VGG +RW Y+T+TNWE YPS ++PIL+YFKETQTKPEGQIHFFP I  P  LL+  R  VP
Sbjct:   49 PSRCVATA-----ERRRRSGDLGMSTVVVPSDFKLPIG--IAAFGLAITGLGNVGAGFPVSVVGLLLAFQATRVKFEFDDVAMEVKIGETPDELESSGENAFVGGESRWNYDTWTNWEVYPSEKLPILMYFKETQTKPEGQIHFFPFIMEPDVLLQEVRARVP 204          
BLAST of NO13G01160 vs. NCBI_GenBank
Match: EJK44343.1 (hypothetical protein THAOC_37123 [Thalassiosira oceanica])

HSP 1 Score: 129.0 bits (323), Expect = 1.600e-26
Identity = 75/173 (43.35%), Postives = 102/173 (58.96%), Query Frame = 0
Query:   27 STPARLTVT-----ALNSWGGKKAKVAPVVVEPE-IIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFL-------ASRTQRVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENF 187
            S+P RL+ T     ++ S    K+   P    P+ ++ PDY++AAGF  AG       ++   AGV  +  G FL       A +  R+RFVFD+++ E+  VGE GEL    EN  VGG+NRW+Y +F NW F+PS + PILVYFKETQT P+GQIHFFP   N  +L + F
Sbjct:   34 SSPLRLSNTPNPFESIQSIFSPKSGSPPSRAIPDAVVDPDYKLAAGFGAAGAA----TIALDQAGVVGSAFGGFLCLLALLFAVQGTRIRFVFDQDSFELKQVGE-GELDDSGENIVVGGKNRWSYESFVNWRFFPSKEFPILVYFKETQTSPDGQIHFFPAFANVDQLNDQF 201          
BLAST of NO13G01160 vs. NCBI_GenBank
Match: XP_017258868.1 (PREDICTED: uncharacterized protein LOC108227966 [Daucus carota subsp. sativus] >XP_017258869.1 PREDICTED: uncharacterized protein LOC108227966 [Daucus carota subsp. sativus])

HSP 1 Score: 127.1 bits (318), Expect = 6.000e-26
Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0
Query:   30 ARLTVTALNSWGGKKAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLE 185
            +R T+T+L     KKA V P VV P+   PDYR+     L G+   +    N  A  P+ ++G  L  +T RVRFVFD EA+EV  VG+  EL    EN  VGG+NRW Y+TF NWE +  P  P+LVYFKETQTKPEGQ+HFFPVI N  +L +
Sbjct:   51 SRATITSLFGRKVKKATVVPTVV-PD---PDYRIPV--VLLGLAGGLGYTDNLLAAAPVGLLGLLLLFQTTRVRFVFDNEALEV-KVGK--ELDESGENVFVGGKNRWKYSTFVNWELW-WPNFPVLVYFKETQTKPEGQVHFFPVIFNGKQLYD 195          
BLAST of NO13G01160 vs. NCBI_GenBank
Match: XP_002290096.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91848.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 125.9 bits (315), Expect = 1.300e-25
Identity = 75/185 (40.54%), Postives = 105/185 (56.76%), Query Frame = 0
Query:   12 LPAIAAGFLAPTPALSTPARLTVTALNSWGGKKAKVAPVVVEPEIIA-PDYRVAAGFFLAGVGLAVPPLSNPGA---GVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGED-GELSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQT-KPE----GQIHFFPVIGNPAKLLENF 187
            +P+  A  + P  A   P       L+  GG     APV   P+++   DY++AA F  A V + +   ++ G    G  +A++G+  A +  R+RFVFD++  E+  V  D  +L+   EN  VGG NRW+Y++F NW+FYPS   PILVYFKETQT KP+    GQIHFFP I N  +L E F
Sbjct:   27 VPSSRATLVKPLAADGNPFNFFKDVLSPSGGDAEVAAPVPAIPDVVVDSDYKLAAAFGAAAVSIVIATDASVGGSIFGGLIALLGSLFAVQATRIRFVFDQDCFELKAVDADTKQLADSGENIVVGGANRWSYDSFVNWDFYPSVDFPILVYFKETQTPKPDGGEPGQIHFFPAIANCKQLEEQF 211          
BLAST of NO13G01160 vs. NCBI_GenBank
Match: PON88997.1 (hypothetical protein TorRG33x02_152260 [Trema orientalis])

HSP 1 Score: 125.9 bits (315), Expect = 1.300e-25
Identity = 74/152 (48.68%), Postives = 92/152 (60.53%), Query Frame = 0
Query:   33 TVTALNSWGGKKAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLE 185
            +V   +  GGKK     +V+ P+   PDYR+         GLA      P A  P+ ++G  L  +T RVRFVFD+EA+EV  VG   +L    EN  VGG+NRW Y+TF NWE +  P  PILVYFKETQTKPEGQ+HFFPVI N  KL +
Sbjct:   50 SVVVASVLGGKKTDTRGIVI-PD---PDYRIPIVLLGLAGGLAYTNNLLPAA--PVGLLGILLLFQTTRVRFVFDDEALEV-KVGNGDQLQDSGENVFVGGKNRWKYSTFVNWELW-WPNFPILVYFKETQTKPEGQVHFFPVIFNGKKLYD 193          
BLAST of NO13G01160 vs. NCBI_GenBank
Match: XP_024543928.1 (uncharacterized protein LOC112351026 [Selaginella moellendorffii])

HSP 1 Score: 125.6 bits (314), Expect = 1.700e-25
Identity = 80/181 (44.20%), Postives = 106/181 (58.56%), Query Frame = 0
Query:   10 VLLPAIAAGFL-----APTPAL-STPARLTVTALNSWGGKKAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLE 185
            VL PA+ AG +     AP+ +L  +P RL+         K+ + A +V E  I APDYR+     L G   A+    N     P+ ++G  L  +T RV+FVFD+EA+EV       EL    EN  VGG+NRW Y+TFTNWE +  P  P+LVYFKETQTKPEGQ+HFFPVI +  +L +
Sbjct:    9 VLRPALGAGSIGLQPRAPSSSLIFSPRRLSRPGAVKALFKRKQAAKIVRETVIPAPDYRIPV--VLLGAAGALVYTDNLLPAAPIGLLGLLLLFQTTRVKFVFDDEALEVKI---GSELQESGENVFVGGKNRWKYSTFTNWELW-WPSFPVLVYFKETQTKPEGQVHFFPVIFDGKRLYD 183          
BLAST of NO13G01160 vs. NCBI_GenBank
Match: XP_004287321.1 (PREDICTED: uncharacterized protein LOC101296996 [Fragaria vesca subsp. vesca])

HSP 1 Score: 125.2 bits (313), Expect = 2.300e-25
Identity = 75/148 (50.68%), Postives = 90/148 (60.81%), Query Frame = 0
Query:   37 LNSWGGKKAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLE 185
            + S  G+K K     V PE   PDYR+         GLA      P A  P+ ++G  L  +T RVRFVFDEEA+EV  VGE  EL    EN  VGG+NRW Y++F NWE +  P  PILVYFKETQTKPEGQ+HFFPVI N  +L +
Sbjct:   51 VTSVSGRKVKTTRETVIPE---PDYRIPIVLLGLSGGLAYTNNLLPAA--PVGLLGLLLLFQTTRVRFVFDEEALEV-KVGE--ELENSGENVFVGGKNRWKYSSFVNWELW-WPNFPILVYFKETQTKPEGQVHFFPVIFNGKQLYD 189          
The following BLAST results are available for this feature:
BLAST of NO13G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21798.18.200e-8478.92Protein of unknown function DUF3119 [Nannochlorops... [more]
XP_005852703.11.400e-8378.92hypothetical protein NGA_0681310 [Nannochloropsis ... [more]
CEM17412.15.800e-3755.26unnamed protein product [Vitrella brassicaformis C... [more]
CBJ26326.12.000e-2945.40conserved unknown protein [Ectocarpus siliculosus][more]
EJK44343.11.600e-2643.35hypothetical protein THAOC_37123 [Thalassiosira oc... [more]
XP_017258868.16.000e-2649.68PREDICTED: uncharacterized protein LOC108227966 [D... [more]
XP_002290096.11.300e-2540.54predicted protein [Thalassiosira pseudonana CCMP13... [more]
PON88997.11.300e-2548.68hypothetical protein TorRG33x02_152260 [Trema orie... [more]
XP_024543928.11.700e-2544.20uncharacterized protein LOC112351026 [Selaginella ... [more]
XP_004287321.12.300e-2550.68PREDICTED: uncharacterized protein LOC101296996 [F... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001778NSK001778Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01160.3NO13G01160.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G01160.2NO13G01160.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G01160.1NO13G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596688gene_6893Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100065g2gene8647Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01160.3NO13G01160.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G01160.2NO13G01160.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G01160.1NO13G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01160 ID=NO13G01160|Name=NO13G01160|organism=Nannochloropsis oceanica|type=gene|length=1085bp
ACAGACACCCACAACATCATGCTGAGCTTTCGAGCGACCCTCCTGGTTCT
CCTGCCCGCTATTGCCGCAGGCTTCCTGGCCCCCACGCCGGCTCTCAGgt
acgccctcgttttgttccttttcgtgatgacgatgcctgtcgcgccatga
ggtggcttaagtgtgcataagacctaaaacagctaattaatcgggttatt
gacagtgtgtactgtacagaagattcgcgacaggcgccgcgatgagaaga
cggctgcaatctgaaaatcacccttacactcgtactccgtcctgtcaacc
gacacacagcctcaccacccacacgcgcagCACGCCTGCCCGCTTGACGG
TCACGGCCCTGAACAGCTGGGGGGGCAAAAAGGCGAAAGTCGCGCCTGTG
GTCGTCGAGCCCGAGATTATTGCCCCCGATTATCGTGTAGCCGCCGGCTT
CTTTTTGGCTGGAGTAGGCCTAGCGGTCCCCCCTCTGTCTAACCCGGGGG
CGGGCGTTCCCTTGGCGGTGATCGGCGCCTTTCTGGCCAGCCGGACGCAG
AGAGTTCGATTTGTGTTTGATGAGGAAGCGATGGAGGTGATGACCGTTGG
CGAAGATGGGGAGTTGAGCATGGAAAGGGAGAATTTTGCGGTGGGCGGCC
GGAATCGGTGGGCATACAATACGTTTACGAATTGGGAGgtgcgtcattta
tttgttggcgcacgcaagataaaaccagaggtgttgctgggatatcaaca
gaaaatttatctgactcactcatcgttccctttctcctctctctccctag
TTTTACCCCTCCCCGCAGGTGCCTATCCTCGTTTACTTCAAGGAGACCCA
GACGAAGCCCGAGGGCCAGATCCACTTCTTCCCTGTCATTGGTAACCCAG
CGAAATTGTTGGAGAACTTTAGGAAGTACGTACCGCTCGGCAAGTAATGG
TCATGTAAGGGGGGAGAGGGGGAAGGAGACGTGAAGAGTGAGAATGGTGT
GGTTGGACCAGCTGTGGTAAGAGTGTTGTAAGAATCGAAGAAATGGAAAC
GATGACTCTAAATCACTTCACTGTCGACATCAGGA
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protein sequence of NO13G01160.3

>NO13G01160.3-protein ID=NO13G01160.3-protein|Name=NO13G01160.3|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MRRRLQSENHPYTRTPSCQPTHSLTTHTRSTPARLTVTALNSWGGKKAKV
APVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLAS
RTQRVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFTNWEF
YPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENFRKYVPLGK*
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protein sequence of NO13G01160.2

>NO13G01160.2-protein ID=NO13G01160.2-protein|Name=NO13G01160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MLSFRATLLVLLPAIAAGFLAPTPALSTPARLTVTALNSWGGKKAKVAPV
VVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQ
RVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFTNWEFYPS
PQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENFRKYVPLGK*
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protein sequence of NO13G01160.1

>NO13G01160.1-protein ID=NO13G01160.1-protein|Name=NO13G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MLSFRATLLVLLPAIAAGFLAPTPALSLTTHTRSTPARLTVTALNSWGGK
KAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGA
FLASRTQRVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFT
NWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENFRKYVPLG
K*
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Synonyms
Publications