NO13G01160.1, NO13G01160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01160.1
Unique NameNO13G01160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length762
Alignment locationchr13:358830..359914 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:358830..359914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01160.1 vs.
Match: EWM21798.1 (Protein of unknown function DUF3119 [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 2.000e-85
Identity = 163/204 (79.90%), Postives = 178/204 (87.25%), Query Frame = 0 
Query:    1 MLSFRATLLVLLPAIAAGFLAPTPALS----LTTHTRSTPARLTVTALNSWGGKKAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGAFLASRTQRVRFVFDEEAMEVMTVGEDGE-LSMERENFAVGGRNRWAYNTFTNWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENFRKYVPL 200
            ML+ R    +LLPA+AAGFL PTP+LS    + T +R  PARL VTALNSWGGKK K   V VEPE+IAPDYRVAAGFFL GVGLA+PPLSNPGAG+PLA+IGAFLASRTQ+VRFVFDEEAMEVMTVG DG+ LSMERENFAVGGRNRW Y +FTNWEFYPS QVP+LVYFKETQTKPEGQIHFFPVIGNPA+LLENFRKYVPL
Sbjct:    1 MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPL 204
The following BLAST results are available for this feature:
BLAST of NO13G01160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21798.12.000e-8579.90Protein of unknown function DUF3119 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01160NO13G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01160.1NO13G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01160.1.cds1NO13G01160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01160.1.cds2NO13G01160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01160.1.cds3NO13G01160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01160.1 ID=NO13G01160.1|Name=NO13G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ACAGACACCCACAACATCATGCTGAGCTTTCGAGCGACCCTCCTGGTTCT
CCTGCCCGCTATTGCCGCAGGCTTCCTGGCCCCCACGCCGGCTCTCAGCC
TCACCACCCACACGCGCAGCACGCCTGCCCGCTTGACGGTCACGGCCCTG
AACAGCTGGGGGGGCAAAAAGGCGAAAGTCGCGCCTGTGGTCGTCGAGCC
CGAGATTATTGCCCCCGATTATCGTGTAGCCGCCGGCTTCTTTTTGGCTG
GAGTAGGCCTAGCGGTCCCCCCTCTGTCTAACCCGGGGGCGGGCGTTCCC
TTGGCGGTGATCGGCGCCTTTCTGGCCAGCCGGACGCAGAGAGTTCGATT
TGTGTTTGATGAGGAAGCGATGGAGGTGATGACCGTTGGCGAAGATGGGG
AGTTGAGCATGGAAAGGGAGAATTTTGCGGTGGGCGGCCGGAATCGGTGG
GCATACAATACGTTTACGAATTGGGAGTTTTACCCCTCCCCGCAGGTGCC
TATCCTCGTTTACTTCAAGGAGACCCAGACGAAGCCCGAGGGCCAGATCC
ACTTCTTCCCTGTCATTGGTAACCCAGCGAAATTGTTGGAGAACTTTAGG
AAGTACGTACCGCTCGGCAAGTAATGGTCATGTAAGGGGGGAGAGGGGGA
AGGAGACGTGAAGAGTGAGAATGGTGTGGTTGGACCAGCTGTGGTAAGAG
TGTTGTAAGAATCGAAGAAATGGAAACGATGACTCTAAATCACTTCACTG
TCGACATCAGGA
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protein sequence of NO13G01160.1

>NO13G01160.1-protein ID=NO13G01160.1-protein|Name=NO13G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MLSFRATLLVLLPAIAAGFLAPTPALSLTTHTRSTPARLTVTALNSWGGK
KAKVAPVVVEPEIIAPDYRVAAGFFLAGVGLAVPPLSNPGAGVPLAVIGA
FLASRTQRVRFVFDEEAMEVMTVGEDGELSMERENFAVGGRNRWAYNTFT
NWEFYPSPQVPILVYFKETQTKPEGQIHFFPVIGNPAKLLENFRKYVPLG
K*
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mRNA from alignment at chr13:358830..359914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01160.1 ID=NO13G01160.1|Name=NO13G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1085bp|location=Sequence derived from alignment at chr13:358830..359914- (Nannochloropsis oceanica)
ACAGACACCCACAACATCATGCTGAGCTTTCGAGCGACCCTCCTGGTTCT
CCTGCCCGCTATTGCCGCAGGCTTCCTGGCCCCCACGCCGGCTCTCAGGT
ACGCCCTCGTTTTGTTCCTTTTCGTGATGACGATGCCTGTCGCGCCATGA
GGTGGCTTAAGTGTGCATAAGACCTAAAACAGCTAATTAATCGGGTTATT
GACAGTGTGTACTGTACAGAAGATTCGCGACAGGCGCCGCGATGAGAAGA
CGGCTGCAATCTGAAAATCACCCTTACACTCGTACTCCGTCCTGTCAACC
GACACACAGCCTCACCACCCACACGCGCAGCACGCCTGCCCGCTTGACGG
TCACGGCCCTGAACAGCTGGGGGGGCAAAAAGGCGAAAGTCGCGCCTGTG
GTCGTCGAGCCCGAGATTATTGCCCCCGATTATCGTGTAGCCGCCGGCTT
CTTTTTGGCTGGAGTAGGCCTAGCGGTCCCCCCTCTGTCTAACCCGGGGG
CGGGCGTTCCCTTGGCGGTGATCGGCGCCTTTCTGGCCAGCCGGACGCAG
AGAGTTCGATTTGTGTTTGATGAGGAAGCGATGGAGGTGATGACCGTTGG
CGAAGATGGGGAGTTGAGCATGGAAAGGGAGAATTTTGCGGTGGGCGGCC
GGAATCGGTGGGCATACAATACGTTTACGAATTGGGAGGTGCGTCATTTA
TTTGTTGGCGCACGCAAGATAAAACCAGAGGTGTTGCTGGGATATCAACA
GAAAATTTATCTGACTCACTCATCGTTCCCTTTCTCCTCTCTCTCCCTAG
TTTTACCCCTCCCCGCAGGTGCCTATCCTCGTTTACTTCAAGGAGACCCA
GACGAAGCCCGAGGGCCAGATCCACTTCTTCCCTGTCATTGGTAACCCAG
CGAAATTGTTGGAGAACTTTAGGAAGTACGTACCGCTCGGCAAGTAATGG
TCATGTAAGGGGGGAGAGGGGGAAGGAGACGTGAAGAGTGAGAATGGTGT
GGTTGGACCAGCTGTGGTAAGAGTGTTGTAAGAATCGAAGAAATGGAAAC
GATGACTCTAAATCACTTCACTGTCGACATCAGGA
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Coding sequence (CDS) from alignment at chr13:358830..359914-

>NO13G01160.1 ID=NO13G01160.1|Name=NO13G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr13:358830..359914- (Nannochloropsis oceanica)
ATGCTGAGCTTTCGAGCGACCCTCCTGGTTCTCCTGCCCGCTATTGCCGC
AGGCTTCCTGGCCCCCACGCCGGCTCTCAGCCTCACCACCCACACGCGCA
GCACGCCTGCCCGCTTGACGGTCACGGCCCTGAACAGCTGGGGGGGCAAA
AAGGCGAAAGTCGCGCCTGTGGTCGTCGAGCCCGAGATTATTGCCCCCGA
TTATCGTGTAGCCGCCGGCTTCTTTTTGGCTGGAGTAGGCCTAGCGGTCC
CCCCTCTGTCTAACCCGGGGGCGGGCGTTCCCTTGGCGGTGATCGGCGCC
TTTCTGGCCAGCCGGACGCAGAGAGTTCGATTTGTGTTTGATGAGGAAGC
GATGGAGGTGATGACCGTTGGCGAAGATGGGGAGTTGAGCATGGAAAGGG
AGAATTTTGCGGTGGGCGGCCGGAATCGGTGGGCATACAATACGTTTACG
AATTGGGAGTTTTACCCCTCCCCGCAGGTGCCTATCCTCGTTTACTTCAA
GGAGACCCAGACGAAGCCCGAGGGCCAGATCCACTTCTTCCCTGTCATTG
GTAACCCAGCGAAATTGTTGGAGAACTTTAGGAAGTACGTACCGCTCGGC
AAGTAA
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Synonyms
Publications