NO13G01120, NO13G01120 (gene) Nannochloropsis oceanica

Overview
NameNO13G01120
Unique NameNO13G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1949
Alignment locationchr13:349136..351084 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:349136..351084 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G01120 vs. NCBI_GenBank
Match: EWM21772.1 (hypothetical protein Naga_100188g1 [Nannochloropsis gaditana])

HSP 1 Score: 150.6 bits (379), Expect = 1.600e-32
Identity = 171/641 (26.68%), Postives = 252/641 (39.31%), Query Frame = 0 
Query:   18 AWAEGDEELANAEVTWRGLKRADEYRRGLVGRRYYKLNRLVRERVFGREGWRGEVVARKERKGRVKSFGVRLRKVMALEGLWRWRKRAREGRRAAIVAERHLQSVQRRVIALWVREVGREKGKRRLRAGRLLRVIRGGLKRWREWACERRKEREEGRERETRRLIKRCLRTWVAVMERREY----GKKLNECFWSSGGRXXXXXXXXXXXXFHSSSVGQAMEVRGRERSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVATGVRWERERRLMKRGWKEWSAVTLRQRLQRRL---------QEEEAVTARLERLVEERRLRRLAEAFVHWRLEVMWREEQKELLMRLDVLARRVLLRRAMEGWKEEEXXXXXVEGRMEKMGRRRERRKGREVLWAWACLVRRERVLRQAQAALHGWMTRQRQRYVLQVWREAWRGREGEAVAAARLEKRLEWFRGVRERGRAREGLRRWRRWL-------MGXXXXXXXXXXXXXXXXXXXXXXXXXXXCSQDGGDAVVAERWEARRETWMGEEVDGLHEALINVQGALLDDRGQGRG-----------REGG-RGEQTRKSRKRDAG------VEARRVEKLQKKVTCLQEVLARKQHQLHEME 621
            A+   D ELA AE  WRGL+ AD +RR  + R    L+RLVR RV+  + W   +  ++E + R+    +R+ +V AL GLWRWR R+ E   A  V+      +Q RV                                    A  R        E E RRL +R LR W   + ++ +     +++N   W+S                H     +A+    +                                                    V    +  ++ RGW EW AV  R+ L+ RL          +      RL   +E+  L R   AFV WRLE +W +E+ +L+ RL ++  R   RRA+  W+         E  + K  RR  +R   +VLWAWACL +RER LRQ QA +   + +QRQR VL  WR AW+GR+ EAVA  +  + L+W+   +ER   +  LR+W  W+       +G                            ++ G D     + +        +   G H+ L  V+G L ++ GQG             R+G  RG++ R+  +R +G        A R  KLQ     LQE L RK+ QL   E
Sbjct:    2 AYTGADVELAEAEAIWRGLESADAFRRAWIRRPDSALSRLVRTRVY--QEWPRRLWWQREAEARIAQHHLRVLQVRALAGLWRWRARSNEAHAARKVSAYTTSGIQTRVWGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVNRXXXXXXXXEMEARRLSRRTLRAWHKALAKQRFMGAVDREVNASLWASA-------TGERDGNMHDGIDREAVAACAKADRLWRSFVWRRWRRRARWAKAQEQEW----------------------VNKVEKAHQLAVVGRGWSEWRAVWKRRELEHRLGGRARDGRSTQVPRSLCRLASRIEKHALARKEHAFVRWRLETLWAQERNDLVERLVLILIRGHRRRALREWQSRVVQMARNERTLVKAKRRYRKRMMEQVLWAWACLAKRERALRQTQATVTQRIRQQRQRCVLLAWRGAWQGRQVEAVAETQTRRHLQWYAATKEREALKRVLRQWVSWVRRKQREGLGGGQAVGYQGGLGSMGGSAVTGYGVSLRKARGGRDGRNGGKKKKDCGGAQRKPEGGRHQVLQQVEGELSEEAGQGEDLGMHLGRMPEQRKGRYRGQREREPGRRPSGHIREPRKGAVRTRKLQGLSPQLQEDLRRKRRQLEVEE 611
The following BLAST results are available for this feature:
BLAST of NO13G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21772.11.600e-3226.68hypothetical protein Naga_100188g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01120.1NO13G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01120.1NO13G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01120 ID=NO13G01120|Name=NO13G01120|organism=Nannochloropsis oceanica|type=gene|length=1949bp
AAGGGAGGAGAAGGGAGGCAGAAGCGCGGGGGAGGATGTTAAGGAGGAGG
ATTGAGGGAGCGAGGGAGGAAGTAAGGGAGGGCAAGGCGTGGGCGGAGGG
GGACGAAGAGCTAGCAAATGCTGAGGTGACGTGGCGAGGCCTGAAAAGGG
CGGATGAGTACCGAAGAGGGCTGGTGGGTCGACGCTATTATAAACTGAAT
CGGCTGGTGCGAGAGCGAGTGTTTGGTAGGGAGGGATGGAGGGGGGAGGT
GGTGGCGCGGAAGGAGAGGAAGGGGAGGGTGAAGAGCTTTGGAGTGAGGC
TGCGGAAAGTGATGGCGTTGGAGGGGTTGTGGAGGTGGAGGAAGAGGGCA
AGGGAGGGGAGGAGGGCTGCGATTGTGGCTGAGAGGCATTTGCAGAGTGT
GCAGCGGAGGGTGATAGCTTTGTGGGTGCGGGAGGTAGGGAGGGAGAAGG
GGAAGAGAAGGTTGAGGGCTGGGAGACTATTGAGGGTGATTAGAGGGGGT
TTAAAGAGGTGGAGGGAGTGGGCATGTGAGAGGAGGAAGGAGAGGGAGGA
GGGGAGGGAGAGAGAGACACGGCGGCTGATAAAGAGATGCTTGAGGACAT
GGGTGGCGGTGATGGAGAGAAGGGAGTACGGGAAGAAGTTGAATGAATGT
TTTTGGTCCTCTGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAAGG
ATGGAGGTTTCATTCTTCCTCTGTTGGTCAGGCGATGGAGGTAAGAGGGA
GAGAGCGAAGTGCGGAGGAGGAGGAGGAGGAGGAGGGGGGTGATGACGCG
GGTAGGGCATGGAGAAAGGTGGAGGCGGCGTGGCAGGTGATAATGTTGCG
CCGGTGGAGACGACGGGCTCGAAGAGGAGGAGAGAAGAAAAGGGCGGTAG
CTACAGGGGTGAGGTGGGAACGCGAGAGGAGGTTGATGAAAAGAGGTTGG
AAGGAATGGAGCGCAGTAACTTTAAGGCAGCGCTTACAACGGCGCCTGCA
GGAGGAGGAGGCGGTAACGGCCCGCCTTGAGCGGTTGGTTGAAGAACGAC
GGTTGAGGAGATTGGCCGAGGCGTTTGTACATTGGAGATTGGAGGTGATG
TGGAGGGAAGAGCAGAAGGAGCTGTTGATGCGGTTGGATGTACTCGCTCG
ACGGGTGCTGTTGAGGAGGGCGATGGAGGGATGGAAGGAGGAGGAGAGGT
GGAGGAGGAGGGTGGAAGGGAGGATGGAGAAGATGGGGAGGAGGAGGGAG
AGGAGGAAGGGAAGGGAGGTGCTGTGGGCGTGGGCTTGCTTGGTGAGGAG
GGAGAGGGTGCTTAGGCAGGCACAGGCTGCTCTTCATGGGTGGATGACAC
GGCAGAGGCAACGATACGTTTTGCAGGTATGGAGGGAGGCGTGGCGAGGG
AGGGAGGGAGAGGCAGTTGCTGCAGCTAGGCTGGAGAAGAGGCTGGAGTG
GTTTAGGGGAGTACGGGAGCGAGGGAGGGCGAGGGAGGGATTACGAAGGT
GGAGGAGATGGTTGATGGGGAGGAGGCGAAGGAGGGCGTCCAAAAAATGC
ATGGATGAAAGGAAGGAGGAGAGGGAGGGAGGGGAGGAGGGAGGGGAAGT
CTGTAGTCAGGATGGAGGGGACGCTGTGGTTGCCGAGCGATGGGAAGCAC
GACGAGAGACATGGATGGGCGAGGAGGTGGACGGTTTGCACGAGGCTTTA
ATAAATGTCCAGGGAGCGTTGTTAGATGATCGTGGGCAGGGGAGAGGAAG
GGAAGGAGGGAGGGGTGAGCAGACGCGGAAGAGCAGGAAGAGGGACGCAG
GGGTAGAAGCTAGACGAGTGGAAAAGTTGCAGAAAAAAGTGACGTGTCTT
CAGGAGGTGCTGGCAAGGAAGCAACATCAACTGCACGAGATGGAGCGGAG
GGAGGAGAAGGACAGAGAGCTTTCGGTGGGGGGGGGGATAAGTTCATAA
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protein sequence of NO13G01120.1

>NO13G01120.1-protein ID=NO13G01120.1-protein|Name=NO13G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MLRRRIEGAREEVREGKAWAEGDEELANAEVTWRGLKRADEYRRGLVGRR
YYKLNRLVRERVFGREGWRGEVVARKERKGRVKSFGVRLRKVMALEGLWR
WRKRAREGRRAAIVAERHLQSVQRRVIALWVREVGREKGKRRLRAGRLLR
VIRGGLKRWREWACERRKEREEGRERETRRLIKRCLRTWVAVMERREYGK
KLNECFWSSGGREGGREGGREGWRFHSSSVGQAMEVRGRERSAEEEEEEE
GGDDAGRAWRKVEAAWQVIMLRRWRRRARRGGEKKRAVATGVRWERERRL
MKRGWKEWSAVTLRQRLQRRLQEEEAVTARLERLVEERRLRRLAEAFVHW
RLEVMWREEQKELLMRLDVLARRVLLRRAMEGWKEEERWRRRVEGRMEKM
GRRRERRKGREVLWAWACLVRRERVLRQAQAALHGWMTRQRQRYVLQVWR
EAWRGREGEAVAAARLEKRLEWFRGVRERGRAREGLRRWRRWLMGRRRRR
ASKKCMDERKEEREGGEEGGEVCSQDGGDAVVAERWEARRETWMGEEVDG
LHEALINVQGALLDDRGQGRGREGGRGEQTRKSRKRDAGVEARRVEKLQK
KVTCLQEVLARKQHQLHEMERREEKDRELSVGGGISS*
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Synonyms
Publications