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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:349136..351084 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01120.1 vs.
Match: EWM21772.1 (hypothetical protein Naga_100188g1 [Nannochloropsis gaditana]) HSP 1 Score: 208.8 bits (530), Expect = 5.100e-50 Identity = 200/606 (33.00%), Postives = 285/606 (47.03%), Query Frame = 0
Query: 18 AWAEGDEELANAEVTWRGLKRADEYRRGLVGRRYYKLNRLVRERVFGREGWRGEVVARKERKGRVKSFGVRLRKVMALEGLWRWRKRAREGRRAAIVAERHLQSVQRRVIALWVREVGREKGKRRLRAGRLLRVIRGGLKRWREWACERRKEREEGRERETRRLIKRCLRTWVAVMERREY----GKKLNECFWSS--GGREGGREGGREGWRFHSSSVGQAMEVRGRERSAEEEEEEEGGDDAGRAWRKVEAAWQVIMLRRWRRRARRGGEKKRAVATGVRWERERRLMKRGWKEWSAVTLRQRLQRRL---------QEEEAVTARLERLVEERRLRRLAEAFVHWRLEVMWREEQKELLMRLDVLARRVLLRRAMEGWKEEERWRRRVEGRMEKMGRRRERRKGREVLWAWACLVRRERVLRQAQAALHGWMTRQRQRYVLQVWREAWRGREGEAVAAARLEKRLEWFRGVRERGRAREGLRRWRRWLMGRRRRRASKKCMDERKEEREGGEEGGEVCSQDGGDAVVAERWEARRETWMGEEVDGLHEALINVQGALLDDRGQGRGREGGRGEQTRKSRKRDAGVEARRVEKLQKKVTCLQEV 609
A+ D ELA AE WRGL+ AD +RR + R L+RLVR RV+ + W + ++E + R+ +R+ +V AL GLWRWR R+ E A V+ +Q RV W R R + +RRLRA RLLR +R GL W+ WA RRK RE +E E RRL +R LR W + ++ + +++N W+S G R+G G +V + RS R WR+ A W + W + EK +A ++ RGW EW AV R+ L+ RL + RL +E+ L R AFV WRLE +W +E+ +L+ RL ++ R RRA+ W+ R E + K RR +R +VLWAWACL +RER LRQ QA + + +QRQR VL WR AW+GR+ EAVA + + L+W+ +ER + LR+W W+ R+++RE G GG+ GG + G V G +L RG GR GG+ +K+D G R+ E + +V LQ+V
Sbjct: 2 AYTGADVELAEAEAIWRGLESADAFRRAWIRRPDSALSRLVRTRVY--QEWPRRLWWQREAEARIAQHHLRVLQVRALAGLWRWRARSNEAHAARKVSAYTTSGIQTRVWGRWRRVTRRLRHQRRLRAVRLLRRVRNGLHEWQAWAVNRRKRRESLKEMEARRLSRRTLRAWHKALAKQRFMGAVDREVNASLWASATGERDGNMHDG-----IDREAVAACAKADRLWRSF-----------VWRRWRR-RARWAKAQEQEWVNKV----EKAHQLA----------VVGRGWSEWRAVWKRRELEHRLGGRARDGRSTQVPRSLCRLASRIEKHALARKEHAFVRWRLETLWAQERNDLVERLVLILIRGHRRRALREWQSRVVQMARNERTLVKAKRRYRKRMMEQVLWAWACLAKRERALRQTQATVTQRIRQQRQRCVLLAWRGAWQGRQVEAVAETQTRRHLQWYAATKEREALKRVLRQWVSWV---------------RRKQRE-GLGGGQAVGYQGGLGSMG-----------GSAVTGYGVSLRKA-------RGGRDGRNGGK-------KKKDCGGAQRKPEGGRHQV--LQQV 531
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01120.1 ID=NO13G01120.1|Name=NO13G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1949bp
AAGGGAGGAGAAGGGAGGCAGAAGCGCGGGGGAGGATGTTAAGGAGGAGG
ATTGAGGGAGCGAGGGAGGAAGTAAGGGAGGGCAAGGCGTGGGCGGAGGG
GGACGAAGAGCTAGCAAATGCTGAGGTGACGTGGCGAGGCCTGAAAAGGG
CGGATGAGTACCGAAGAGGGCTGGTGGGTCGACGCTATTATAAACTGAAT
CGGCTGGTGCGAGAGCGAGTGTTTGGTAGGGAGGGATGGAGGGGGGAGGT
GGTGGCGCGGAAGGAGAGGAAGGGGAGGGTGAAGAGCTTTGGAGTGAGGC
TGCGGAAAGTGATGGCGTTGGAGGGGTTGTGGAGGTGGAGGAAGAGGGCA
AGGGAGGGGAGGAGGGCTGCGATTGTGGCTGAGAGGCATTTGCAGAGTGT
GCAGCGGAGGGTGATAGCTTTGTGGGTGCGGGAGGTAGGGAGGGAGAAGG
GGAAGAGAAGGTTGAGGGCTGGGAGACTATTGAGGGTGATTAGAGGGGGT
TTAAAGAGGTGGAGGGAGTGGGCATGTGAGAGGAGGAAGGAGAGGGAGGA
GGGGAGGGAGAGAGAGACACGGCGGCTGATAAAGAGATGCTTGAGGACAT
GGGTGGCGGTGATGGAGAGAAGGGAGTACGGGAAGAAGTTGAATGAATGT
TTTTGGTCCTCTGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAAGG
ATGGAGGTTTCATTCTTCCTCTGTTGGTCAGGCGATGGAGGTAAGAGGGA
GAGAGCGAAGTGCGGAGGAGGAGGAGGAGGAGGAGGGGGGTGATGACGCG
GGTAGGGCATGGAGAAAGGTGGAGGCGGCGTGGCAGGTGATAATGTTGCG
CCGGTGGAGACGACGGGCTCGAAGAGGAGGAGAGAAGAAAAGGGCGGTAG
CTACAGGGGTGAGGTGGGAACGCGAGAGGAGGTTGATGAAAAGAGGTTGG
AAGGAATGGAGCGCAGTAACTTTAAGGCAGCGCTTACAACGGCGCCTGCA
GGAGGAGGAGGCGGTAACGGCCCGCCTTGAGCGGTTGGTTGAAGAACGAC
GGTTGAGGAGATTGGCCGAGGCGTTTGTACATTGGAGATTGGAGGTGATG
TGGAGGGAAGAGCAGAAGGAGCTGTTGATGCGGTTGGATGTACTCGCTCG
ACGGGTGCTGTTGAGGAGGGCGATGGAGGGATGGAAGGAGGAGGAGAGGT
GGAGGAGGAGGGTGGAAGGGAGGATGGAGAAGATGGGGAGGAGGAGGGAG
AGGAGGAAGGGAAGGGAGGTGCTGTGGGCGTGGGCTTGCTTGGTGAGGAG
GGAGAGGGTGCTTAGGCAGGCACAGGCTGCTCTTCATGGGTGGATGACAC
GGCAGAGGCAACGATACGTTTTGCAGGTATGGAGGGAGGCGTGGCGAGGG
AGGGAGGGAGAGGCAGTTGCTGCAGCTAGGCTGGAGAAGAGGCTGGAGTG
GTTTAGGGGAGTACGGGAGCGAGGGAGGGCGAGGGAGGGATTACGAAGGT
GGAGGAGATGGTTGATGGGGAGGAGGCGAAGGAGGGCGTCCAAAAAATGC
ATGGATGAAAGGAAGGAGGAGAGGGAGGGAGGGGAGGAGGGAGGGGAAGT
CTGTAGTCAGGATGGAGGGGACGCTGTGGTTGCCGAGCGATGGGAAGCAC
GACGAGAGACATGGATGGGCGAGGAGGTGGACGGTTTGCACGAGGCTTTA
ATAAATGTCCAGGGAGCGTTGTTAGATGATCGTGGGCAGGGGAGAGGAAG
GGAAGGAGGGAGGGGTGAGCAGACGCGGAAGAGCAGGAAGAGGGACGCAG
GGGTAGAAGCTAGACGAGTGGAAAAGTTGCAGAAAAAAGTGACGTGTCTT
CAGGAGGTGCTGGCAAGGAAGCAACATCAACTGCACGAGATGGAGCGGAG
GGAGGAGAAGGACAGAGAGCTTTCGGTGGGGGGGGGGATAAGTTCATAA back to topprotein sequence of NO13G01120.1 >NO13G01120.1-protein ID=NO13G01120.1-protein|Name=NO13G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MLRRRIEGAREEVREGKAWAEGDEELANAEVTWRGLKRADEYRRGLVGRR
YYKLNRLVRERVFGREGWRGEVVARKERKGRVKSFGVRLRKVMALEGLWR
WRKRAREGRRAAIVAERHLQSVQRRVIALWVREVGREKGKRRLRAGRLLR
VIRGGLKRWREWACERRKEREEGRERETRRLIKRCLRTWVAVMERREYGK
KLNECFWSSGGREGGREGGREGWRFHSSSVGQAMEVRGRERSAEEEEEEE
GGDDAGRAWRKVEAAWQVIMLRRWRRRARRGGEKKRAVATGVRWERERRL
MKRGWKEWSAVTLRQRLQRRLQEEEAVTARLERLVEERRLRRLAEAFVHW
RLEVMWREEQKELLMRLDVLARRVLLRRAMEGWKEEERWRRRVEGRMEKM
GRRRERRKGREVLWAWACLVRRERVLRQAQAALHGWMTRQRQRYVLQVWR
EAWRGREGEAVAAARLEKRLEWFRGVRERGRAREGLRRWRRWLMGRRRRR
ASKKCMDERKEEREGGEEGGEVCSQDGGDAVVAERWEARRETWMGEEVDG
LHEALINVQGALLDDRGQGRGREGGRGEQTRKSRKRDAGVEARRVEKLQK
KVTCLQEVLARKQHQLHEMERREEKDRELSVGGGISS* back to topmRNA from alignment at chr13:349136..351084- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01120.1 ID=NO13G01120.1|Name=NO13G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1949bp|location=Sequence derived from alignment at chr13:349136..351084- (Nannochloropsis oceanica)
AAGGGAGGAGAAGGGAGGCAGAAGCGCGGGGGAGGATGTTAAGGAGGAGG
ATTGAGGGAGCGAGGGAGGAAGTAAGGGAGGGCAAGGCGTGGGCGGAGGG
GGACGAAGAGCTAGCAAATGCTGAGGTGACGTGGCGAGGCCTGAAAAGGG
CGGATGAGTACCGAAGAGGGCTGGTGGGTCGACGCTATTATAAACTGAAT
CGGCTGGTGCGAGAGCGAGTGTTTGGTAGGGAGGGATGGAGGGGGGAGGT
GGTGGCGCGGAAGGAGAGGAAGGGGAGGGTGAAGAGCTTTGGAGTGAGGC
TGCGGAAAGTGATGGCGTTGGAGGGGTTGTGGAGGTGGAGGAAGAGGGCA
AGGGAGGGGAGGAGGGCTGCGATTGTGGCTGAGAGGCATTTGCAGAGTGT
GCAGCGGAGGGTGATAGCTTTGTGGGTGCGGGAGGTAGGGAGGGAGAAGG
GGAAGAGAAGGTTGAGGGCTGGGAGACTATTGAGGGTGATTAGAGGGGGT
TTAAAGAGGTGGAGGGAGTGGGCATGTGAGAGGAGGAAGGAGAGGGAGGA
GGGGAGGGAGAGAGAGACACGGCGGCTGATAAAGAGATGCTTGAGGACAT
GGGTGGCGGTGATGGAGAGAAGGGAGTACGGGAAGAAGTTGAATGAATGT
TTTTGGTCCTCTGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAAGG
ATGGAGGTTTCATTCTTCCTCTGTTGGTCAGGCGATGGAGGTAAGAGGGA
GAGAGCGAAGTGCGGAGGAGGAGGAGGAGGAGGAGGGGGGTGATGACGCG
GGTAGGGCATGGAGAAAGGTGGAGGCGGCGTGGCAGGTGATAATGTTGCG
CCGGTGGAGACGACGGGCTCGAAGAGGAGGAGAGAAGAAAAGGGCGGTAG
CTACAGGGGTGAGGTGGGAACGCGAGAGGAGGTTGATGAAAAGAGGTTGG
AAGGAATGGAGCGCAGTAACTTTAAGGCAGCGCTTACAACGGCGCCTGCA
GGAGGAGGAGGCGGTAACGGCCCGCCTTGAGCGGTTGGTTGAAGAACGAC
GGTTGAGGAGATTGGCCGAGGCGTTTGTACATTGGAGATTGGAGGTGATG
TGGAGGGAAGAGCAGAAGGAGCTGTTGATGCGGTTGGATGTACTCGCTCG
ACGGGTGCTGTTGAGGAGGGCGATGGAGGGATGGAAGGAGGAGGAGAGGT
GGAGGAGGAGGGTGGAAGGGAGGATGGAGAAGATGGGGAGGAGGAGGGAG
AGGAGGAAGGGAAGGGAGGTGCTGTGGGCGTGGGCTTGCTTGGTGAGGAG
GGAGAGGGTGCTTAGGCAGGCACAGGCTGCTCTTCATGGGTGGATGACAC
GGCAGAGGCAACGATACGTTTTGCAGGTATGGAGGGAGGCGTGGCGAGGG
AGGGAGGGAGAGGCAGTTGCTGCAGCTAGGCTGGAGAAGAGGCTGGAGTG
GTTTAGGGGAGTACGGGAGCGAGGGAGGGCGAGGGAGGGATTACGAAGGT
GGAGGAGATGGTTGATGGGGAGGAGGCGAAGGAGGGCGTCCAAAAAATGC
ATGGATGAAAGGAAGGAGGAGAGGGAGGGAGGGGAGGAGGGAGGGGAAGT
CTGTAGTCAGGATGGAGGGGACGCTGTGGTTGCCGAGCGATGGGAAGCAC
GACGAGAGACATGGATGGGCGAGGAGGTGGACGGTTTGCACGAGGCTTTA
ATAAATGTCCAGGGAGCGTTGTTAGATGATCGTGGGCAGGGGAGAGGAAG
GGAAGGAGGGAGGGGTGAGCAGACGCGGAAGAGCAGGAAGAGGGACGCAG
GGGTAGAAGCTAGACGAGTGGAAAAGTTGCAGAAAAAAGTGACGTGTCTT
CAGGAGGTGCTGGCAAGGAAGCAACATCAACTGCACGAGATGGAGCGGAG
GGAGGAGAAGGACAGAGAGCTTTCGGTGGGGGGGGGGATAAGTTCATAA back to topCoding sequence (CDS) from alignment at chr13:349136..351084- >NO13G01120.1 ID=NO13G01120.1|Name=NO13G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at chr13:349136..351084- (Nannochloropsis oceanica)
ATGTTAAGGAGGAGGATTGAGGGAGCGAGGGAGGAAGTAAGGGAGGGCAA
GGCGTGGGCGGAGGGGGACGAAGAGCTAGCAAATGCTGAGGTGACGTGGC
GAGGCCTGAAAAGGGCGGATGAGTACCGAAGAGGGCTGGTGGGTCGACGC
TATTATAAACTGAATCGGCTGGTGCGAGAGCGAGTGTTTGGTAGGGAGGG
ATGGAGGGGGGAGGTGGTGGCGCGGAAGGAGAGGAAGGGGAGGGTGAAGA
GCTTTGGAGTGAGGCTGCGGAAAGTGATGGCGTTGGAGGGGTTGTGGAGG
TGGAGGAAGAGGGCAAGGGAGGGGAGGAGGGCTGCGATTGTGGCTGAGAG
GCATTTGCAGAGTGTGCAGCGGAGGGTGATAGCTTTGTGGGTGCGGGAGG
TAGGGAGGGAGAAGGGGAAGAGAAGGTTGAGGGCTGGGAGACTATTGAGG
GTGATTAGAGGGGGTTTAAAGAGGTGGAGGGAGTGGGCATGTGAGAGGAG
GAAGGAGAGGGAGGAGGGGAGGGAGAGAGAGACACGGCGGCTGATAAAGA
GATGCTTGAGGACATGGGTGGCGGTGATGGAGAGAAGGGAGTACGGGAAG
AAGTTGAATGAATGTTTTTGGTCCTCTGGAGGGAGAGAGGGAGGGAGGGA
GGGAGGGAGGGAAGGATGGAGGTTTCATTCTTCCTCTGTTGGTCAGGCGA
TGGAGGTAAGAGGGAGAGAGCGAAGTGCGGAGGAGGAGGAGGAGGAGGAG
GGGGGTGATGACGCGGGTAGGGCATGGAGAAAGGTGGAGGCGGCGTGGCA
GGTGATAATGTTGCGCCGGTGGAGACGACGGGCTCGAAGAGGAGGAGAGA
AGAAAAGGGCGGTAGCTACAGGGGTGAGGTGGGAACGCGAGAGGAGGTTG
ATGAAAAGAGGTTGGAAGGAATGGAGCGCAGTAACTTTAAGGCAGCGCTT
ACAACGGCGCCTGCAGGAGGAGGAGGCGGTAACGGCCCGCCTTGAGCGGT
TGGTTGAAGAACGACGGTTGAGGAGATTGGCCGAGGCGTTTGTACATTGG
AGATTGGAGGTGATGTGGAGGGAAGAGCAGAAGGAGCTGTTGATGCGGTT
GGATGTACTCGCTCGACGGGTGCTGTTGAGGAGGGCGATGGAGGGATGGA
AGGAGGAGGAGAGGTGGAGGAGGAGGGTGGAAGGGAGGATGGAGAAGATG
GGGAGGAGGAGGGAGAGGAGGAAGGGAAGGGAGGTGCTGTGGGCGTGGGC
TTGCTTGGTGAGGAGGGAGAGGGTGCTTAGGCAGGCACAGGCTGCTCTTC
ATGGGTGGATGACACGGCAGAGGCAACGATACGTTTTGCAGGTATGGAGG
GAGGCGTGGCGAGGGAGGGAGGGAGAGGCAGTTGCTGCAGCTAGGCTGGA
GAAGAGGCTGGAGTGGTTTAGGGGAGTACGGGAGCGAGGGAGGGCGAGGG
AGGGATTACGAAGGTGGAGGAGATGGTTGATGGGGAGGAGGCGAAGGAGG
GCGTCCAAAAAATGCATGGATGAAAGGAAGGAGGAGAGGGAGGGAGGGGA
GGAGGGAGGGGAAGTCTGTAGTCAGGATGGAGGGGACGCTGTGGTTGCCG
AGCGATGGGAAGCACGACGAGAGACATGGATGGGCGAGGAGGTGGACGGT
TTGCACGAGGCTTTAATAAATGTCCAGGGAGCGTTGTTAGATGATCGTGG
GCAGGGGAGAGGAAGGGAAGGAGGGAGGGGTGAGCAGACGCGGAAGAGCA
GGAAGAGGGACGCAGGGGTAGAAGCTAGACGAGTGGAAAAGTTGCAGAAA
AAAGTGACGTGTCTTCAGGAGGTGCTGGCAAGGAAGCAACATCAACTGCA
CGAGATGGAGCGGAGGGAGGAGAAGGACAGAGAGCTTTCGGTGGGGGGGG
GGATAAGTTCATAA back to top
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