NO13G01100, NO13G01100 (gene) Nannochloropsis oceanica

Overview
NameNO13G01100
Unique NameNO13G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3200
Alignment locationchr13:345262..348461 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:345262..348461 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G01100 vs. NCBI_GenBank
Match: EWM21775.1 (hypothetical protein Naga_100188g2 [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 1.700e-57
Identity = 169/437 (38.67%), Postives = 234/437 (53.55%), Query Frame = 0 
Query:    1 MSSFAHPVFASSSKSGGSRRHGSNVLLAPWATASTTSSIPIKTIPHPSSPPESPVHKSNTTQKGNSPAGISST--ITKQYKHAPAPMLPGQMPAAVTGAGHHQKPPSKVVHIVGSAGDEPKQGVKRRVIIGHRSTCKRIKTLVAEVVYPHGQAMQPPPPPRELEAPLILGFVPVGSSXXXXXXXXXXXXXXXXXXXXXXXXQVKVS------SPAGGTVSXXXXXXXXXXXXXXXXXSLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAAARLSSMLLSKSLPGMDQLLTYVSYSQVQCQEHSGLFTQAMEALKHEPALRKDVCDFEQVFNCAGLAYGQRPSAVFADLIDPKFPVVETYHEHAFLRLFVQFVVTRLQMLRGLVVEEGGKXXXXXXXXXKEEVAVLDLYLKMWWRRARAYL 430
            M S A P+ A+S+    S+   S++L AP A A+ + S+P K      +   +P+ K  ++       GI+S+    ++ K+AP  + PG++ AAVTGAGHH+K    ++ IVG+  + P+ GVKRR +  H S+CKR+K++VAEVV+PHGQ  Q                      XXXXXXXXXXXXX           QVK S      SP+ G+V+                 SLRS                                            A  R+S+ LL+  L GM QLL++V+ +QVQCQEH  LF  AM+ +   PALRKD CDFE+V++C  + YG+RPSA+FADLIDP+FPVV TYH+H FLRLF+ + VTRLQ+LR +V+E+ G           EEV ++D +LK W++RA AYL
Sbjct:    1 MPSVAAPLCAASN----SKSVMSSILSAPAAWAADSVSLPAKKESPNKATSSTPLKKRKSSHDDTLSPGITSSEPPIRRPKYAPTALSPGKISAAVTGAGHHKKVLPTIIRIVGACNESPRMGVKRRALTAHPSSCKRVKSMVAEVVHPHGQDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAKAMKDIDMQVKSSNGSMNGSPSSGSVN-------SVSTPSKCTLSLRS-------SSQGSISPPTLRGRGSAAKEQPAPEPVPVVLTEVMEDAMDRISTRLLADDLAGMAQLLSFVAQAQVQCQEHLELFNMAMKKVNEAPALRKDFCDFEKVWSCVDVVYGRRPSAIFADLIDPRFPVVHTYHQHIFLRLFMHYAVTRLQLLRDMVMEKSG-------GPDVEEVGLVDTFLKFWFQRAPAYL 412
The following BLAST results are available for this feature:
BLAST of NO13G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21775.11.700e-5738.67hypothetical protein Naga_100188g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001782NSK001782Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01100.1NO13G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100188g2gene8650Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01100.1NO13G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01100 ID=NO13G01100|Name=NO13G01100|organism=Nannochloropsis oceanica|type=gene|length=3200bp
TTGGAAGCGCACGTTTCCTTTACATCACGCTGCATTTTTCTCAGAAGGAG
GTCCTTTCGCGCACTGGTGGAATGTTGGGACGTTGGGCACAGGGGGCGAC
GTGGCTGATTGCAGACGTCAATGTTGGCGTTGCTAGTACTGCGTCACTAT
CACGTTATGTACCTGGATTGCCTTGTACATGGCGTCAAGTGCGTTTGTTT
CGTGTCTCAACGACTGCCCATTTCGTTTCATGCTGCGCGTGCGTGCGTAA
GTACTGTTCTTGTCATCTGAGGCTGAATGCTTTCCTTCCTGCTCTCGCCG
ATTGCACTCATTGGCGCCATGCATGCCATCCGTAAGCAGCAAACTATGGA
TACGGGTGGCTCCTCATCACCTTTATGGCTGCCTAGTTGCCGACTACGGT
GAGAAGGGAGACGAGTCTTAAAAAAACACATGGGCCCTGGTGTCATATTT
GAACCGCGATTTGAAAAGGAGGGTGTTGGTTACATTCGGTGCCTCCTCGC
CTGTTGGAAAAAAGAGCCTTAACTTTTGGGGCCACGGCAATGCTACACAG
TCTACTCGATATCATCGTGAGGGGTTGAGTAGACGATGTATTTGTCTTAC
TTTGGCCTCTCCCCCCACCCCACTCCCCTTCCGAAGTGAGTTTTTGGCAC
TCTTCCTCGTTGTCGAGTGATGGGATGAGGAGTGAGGAACGTTGAGGCTT
GCTCTGAATGGACATTGCTGGGATTCTGATTTCGACTGGCCAGACCTTTG
CCGATTCTACCTCTGGCTTGTACATCTCTTGCCCGTCGTGTTATGTGCAA
TACCGTGCCTTGTTTAGCACTGGTATCTAGGCAGCGACCTTGACGGCTTG
TTTGCTACAGTATTGTGACAGTGAGCGACGGAGGGAATCGCTGCAGCAGG
CCTCACTTTCTCCTGTCCCATGGCCCCTGTCAAAATTACCAAGCCCTGTG
TGGCACAGTGCGCTGAGCTGTCGGTATCCATACACTGCTCCGTTCTCTTC
TGATCGCTCTCACATCACTCCCTGGCCCTGCTTTCCCCCACACGTGCAGG
CTCACAAACTTCGACAGTTGCCGAGATAGTCGCTTGCTTCTCCCACCTCA
AGTCCTTGACACAGGCACAACAACACACAGAGATCACGTACTAGATTGAA
CACCATGTCTTCTTTCGCTCACCCTGTTTTCGCCAGCAGCAGCAAGAGCG
GCGGCAGCCGCCGCCATGGCAGCAATGTTCTTTTAGCGCCATGGGCCACG
GCGTCAACAACAAGCTCCATCCCCATCAAAACAATTCCCCACCCATCATC
TCCCCCTGAGTCACCCGTCCACAAATCCAACACCACTCAGAAGGGGAATT
CGCCCGCTGGCATTTCCTCCACCATCACCAAGCAATACAAGCACGCGCCT
GCCCCCATGTTGCCGGGCCAAATGCCCGCAGCTGTGACGGGCGCCGGGCA
TCACCAAAAGCCCCCATCCAAGGTTGTACACATTGTGGGTTCCGCGGGTG
ACGAGCCGAAGCAAGGGGTGAAGCGACGTGTCATTATTGGTCACCGTTCT
ACTTGCAAGCGAATAAAGACCCTTGTGGCCGAGGTGGTCTATCCACACGG
CCAAGCCATGCAGCCGCCTCCCCCCCCGCGGGAGTTGGAGGCTCCCCTCA
TCCTGGGCTTCGTGCCAGTGGGTAGTAGCAGTAGCAACGGCAGCAGTAGT
AGCAATAGCAAAAATGCCAAGACCGCAAAGGCCATGAAGGCCATTGATAG
CCAAGTCAAGGTCAGCAGCCCGGCGGGAGGGACAGTTTCCTGTCCTTCCA
CGAGCAGCACAAGCACAACCAACACCAGCACCTGCACTTTCTCCTTGCGT
TCCTCCAGCCTCGTCATGCCCCCCGAGCCCTCCAGTACTGGGCCTGGTAA
GCGAAGGGGCTCCTTTCAACAGCAGGAACAGCAGTTTCCTCCACAGAAGC
AGGTACCAGTTGTCCTGTCGGAGGAGATGCGGCAAGCAGCAGCGCGACTC
TCCTCCATGCTCCTCTCAAAGAGTCTGCCAGGGATGGACCAACTCCTCAC
GTACGTGAGCTACTCCCAAGTTCAATGCCAAGAGCATTCGGGCCTCTTTA
CGCAGGCCATGGAGGCGTTAAAACACGAGCCGGCCCTCCGGAAGGACGTG
TGTGATTTCGAGCAAGTATTTAACTGTGCAGGCCTGGCGTACGGACAACG
TCCCTCCGCGGTATTTGCTGATTTGATAGACCCGAAGTTCCCCGTCGTAG
AGACATATCATGAACATGCTTTTCTACGATTATTCGTACAATTTGTCGTG
ACACGACTGCAGATGCTTAGGGGACTGGTGGTGGAGGAGGGAGGGAAGGA
GGGGAAGGAGGGGAAGGAGGGAGGGAAGGAGGAAGTGGCAGTGCTGGATC
TGTACTTAAAGATGTGGTGGCGACGGGCACGGGCGTATCTCTAGGGAGGG
AAGTGGAAGGGAGCCAATGCCACCAATGCCGAGAAAGGAGGAGGCGAGAG
GGCTTTGATAACGATGGCAACGAAAGACGGTAGAAGGCTTTTGGAGGGTG
TGGGAGTATGTAAGGAAAGAAAAGGTGTTGTGTGTGTGCAGGGAGAGAGT
TGGACAAGAGAATGAGAGTATCATTCGATGGATTTACAAATATATATATT
TGTGTAGGAAAGGACAGCGTGCAGAGAATTGTATTCATGTTGTTGGGCTG
TGGGTAGAAGGGGGGAGAAAGAACTTCGGCACAGTCAGGCATGGGAGAGG
GGGCTGTGAGGCTTAGGGTACAGAGAGGATACGGCGCACTGGTTTTGAAA
GGATGCGAAGCAAGCTGCGACCGGTGAAAAGGATGACTAGACATTTGTGC
CGATTCCTCCGTGTTGTACGCAAGGCGAGAGATGTGGACGCAGAAATTGT
AGGGAGATTTGTATTCTATGCCAGTCTCGAATTTCTCATTCATAATTCTG
GATATGGGTCGCCGATAGCATGGACTCCCGCCAACCGATTACGAGAGTGT
CTGTGGCCAGGGATTGATGTATTATTCTTCCCCCCATCTCGTGTGTGTGG
ATGTGTGTGTGAGAGTGTTTGTGTTTGTACGTAATATCGACAGCCGACGA
TAGTGTGAGGATCGTTTCTTACACGACGAGAGATCAATAATAAGCATCAG
AAAAGAGATATTCATTACGCTAATGGTATAAAGAAGACATGTATGTTATG
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protein sequence of NO13G01100.1

>NO13G01100.1-protein ID=NO13G01100.1-protein|Name=NO13G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MSSFAHPVFASSSKSGGSRRHGSNVLLAPWATASTTSSIPIKTIPHPSSP
PESPVHKSNTTQKGNSPAGISSTITKQYKHAPAPMLPGQMPAAVTGAGHH
QKPPSKVVHIVGSAGDEPKQGVKRRVIIGHRSTCKRIKTLVAEVVYPHGQ
AMQPPPPPRELEAPLILGFVPVGSSSSNGSSSSNSKNAKTAKAMKAIDSQ
VKVSSPAGGTVSCPSTSSTSTTNTSTCTFSLRSSSLVMPPEPSSTGPGKR
RGSFQQQEQQFPPQKQVPVVLSEEMRQAAARLSSMLLSKSLPGMDQLLTY
VSYSQVQCQEHSGLFTQAMEALKHEPALRKDVCDFEQVFNCAGLAYGQRP
SAVFADLIDPKFPVVETYHEHAFLRLFVQFVVTRLQMLRGLVVEEGGKEG
KEGKEGGKEEVAVLDLYLKMWWRRARAYL*
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Synonyms
Publications