NO13G01100.1, NO13G01100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01100.1
Unique NameNO13G01100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3200
Alignment locationchr13:345262..348461 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:345262..348461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G01100.1 vs.
Match: EWM21775.1 (hypothetical protein Naga_100188g2 [Nannochloropsis gaditana])

HSP 1 Score: 322.0 bits (824), Expect = 2.800e-84
Identity = 195/432 (45.14%), Postives = 276/432 (63.89%), Query Frame = 0
Query:    1 MSSFAHPVFASSSKSGGSRRHGSNVLLAPWATASTTSSIPIKTIPHPSSPPESPVHKSNTTQKGNSPAGISSTIT--KQYKHAPAPMLPGQMPAAVTGAGHHQKPPSKVVHIVGSAGDEPKQGVKRRVIIGHRSTCKRIKTLVAEVVYPHGQAMQPPPPPRELEAPLILGFVPVGSSSSNGSSSSNSKNAKTAKAMKAIDSQVKVSSPAGGTVSCPSTSSTSTTNT-STCTFSLRSSSLVMPPEPSSTGPGKRRGSFQQQEQQFPPQKQVPVVLSEEMRQAAARLSSMLLSKSLPGMDQLLTYVSYSQVQCQEHSGLFTQAMEALKHEPALRKDVCDFEQVFNCAGLAYGQRPSAVFADLIDPKFPVVETYHEHAFLRLFVQFVVTRLQMLRGLVVEEGGKEGKEGKEGGKEEVAVLDLYLKMWWRRARAYL 430
            M S A P+ A+S+    S+   S++L AP A A+ + S+P K      +   +P+ K  ++       GI+S+    ++ K+AP  + PG++ AAVTGAGHH+K    ++ IVG+  + P+ GVKRR +  H S+CKR+K++VAEVV+PHGQ  QPPPPPR LE P ILG  P  S++++ S  + + +++ AKAMK ID QVK S+  G     PS+ S ++ +T S CT SLRSSS      P+  G G          ++ P  + VPVVL+E M  A  R+S+ LL+  L GM QLL++V+ +QVQCQEH  LF  AM+ +   PALRKD CDFE+V++C  + YG+RPSA+FADLIDP+FPVV TYH+H FLRLF+ + VTRLQ+LR +V+E+ G           EEV ++D +LK W++RA AYL
Sbjct:    1 MPSVAAPLCAASN----SKSVMSSILSAPAAWAADSVSLPAKKESPNKATSSTPLKKRKSSHDDTLSPGITSSEPPIRRPKYAPTALSPGKISAAVTGAGHHKKVLPTIIRIVGACNESPRMGVKRRALTAHPSSCKRVKSMVAEVVHPHGQDTQPPPPPRPLEEPFILGVPPTCSNNNSSSGKNGNNSSRVAKAMKDIDMQVKSSN--GSMNGSPSSGSVNSVSTPSKCTLSLRSSSQGSISPPTLRGRGSAA-------KEQPAPEPVPVVLTEVMEDAMDRISTRLLADDLAGMAQLLSFVAQAQVQCQEHLELFNMAMKKVNEAPALRKDFCDFEKVWSCVDVVYGRRPSAIFADLIDPRFPVVHTYHQHIFLRLFMHYAVTRLQLLRDMVMEKSGGP-------DVEEVGLVDTFLKFWFQRAPAYL 412          
The following BLAST results are available for this feature:
BLAST of NO13G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21775.12.800e-8445.14hypothetical protein Naga_100188g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01100NO13G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01100.1NO13G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01100.1.cds1NO13G01100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01100.1 ID=NO13G01100.1|Name=NO13G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3200bp
TTGGAAGCGCACGTTTCCTTTACATCACGCTGCATTTTTCTCAGAAGGAG
GTCCTTTCGCGCACTGGTGGAATGTTGGGACGTTGGGCACAGGGGGCGAC
GTGGCTGATTGCAGACGTCAATGTTGGCGTTGCTAGTACTGCGTCACTAT
CACGTTATGTACCTGGATTGCCTTGTACATGGCGTCAAGTGCGTTTGTTT
CGTGTCTCAACGACTGCCCATTTCGTTTCATGCTGCGCGTGCGTGCGTAA
GTACTGTTCTTGTCATCTGAGGCTGAATGCTTTCCTTCCTGCTCTCGCCG
ATTGCACTCATTGGCGCCATGCATGCCATCCGTAAGCAGCAAACTATGGA
TACGGGTGGCTCCTCATCACCTTTATGGCTGCCTAGTTGCCGACTACGGT
GAGAAGGGAGACGAGTCTTAAAAAAACACATGGGCCCTGGTGTCATATTT
GAACCGCGATTTGAAAAGGAGGGTGTTGGTTACATTCGGTGCCTCCTCGC
CTGTTGGAAAAAAGAGCCTTAACTTTTGGGGCCACGGCAATGCTACACAG
TCTACTCGATATCATCGTGAGGGGTTGAGTAGACGATGTATTTGTCTTAC
TTTGGCCTCTCCCCCCACCCCACTCCCCTTCCGAAGTGAGTTTTTGGCAC
TCTTCCTCGTTGTCGAGTGATGGGATGAGGAGTGAGGAACGTTGAGGCTT
GCTCTGAATGGACATTGCTGGGATTCTGATTTCGACTGGCCAGACCTTTG
CCGATTCTACCTCTGGCTTGTACATCTCTTGCCCGTCGTGTTATGTGCAA
TACCGTGCCTTGTTTAGCACTGGTATCTAGGCAGCGACCTTGACGGCTTG
TTTGCTACAGTATTGTGACAGTGAGCGACGGAGGGAATCGCTGCAGCAGG
CCTCACTTTCTCCTGTCCCATGGCCCCTGTCAAAATTACCAAGCCCTGTG
TGGCACAGTGCGCTGAGCTGTCGGTATCCATACACTGCTCCGTTCTCTTC
TGATCGCTCTCACATCACTCCCTGGCCCTGCTTTCCCCCACACGTGCAGG
CTCACAAACTTCGACAGTTGCCGAGATAGTCGCTTGCTTCTCCCACCTCA
AGTCCTTGACACAGGCACAACAACACACAGAGATCACGTACTAGATTGAA
CACCATGTCTTCTTTCGCTCACCCTGTTTTCGCCAGCAGCAGCAAGAGCG
GCGGCAGCCGCCGCCATGGCAGCAATGTTCTTTTAGCGCCATGGGCCACG
GCGTCAACAACAAGCTCCATCCCCATCAAAACAATTCCCCACCCATCATC
TCCCCCTGAGTCACCCGTCCACAAATCCAACACCACTCAGAAGGGGAATT
CGCCCGCTGGCATTTCCTCCACCATCACCAAGCAATACAAGCACGCGCCT
GCCCCCATGTTGCCGGGCCAAATGCCCGCAGCTGTGACGGGCGCCGGGCA
TCACCAAAAGCCCCCATCCAAGGTTGTACACATTGTGGGTTCCGCGGGTG
ACGAGCCGAAGCAAGGGGTGAAGCGACGTGTCATTATTGGTCACCGTTCT
ACTTGCAAGCGAATAAAGACCCTTGTGGCCGAGGTGGTCTATCCACACGG
CCAAGCCATGCAGCCGCCTCCCCCCCCGCGGGAGTTGGAGGCTCCCCTCA
TCCTGGGCTTCGTGCCAGTGGGTAGTAGCAGTAGCAACGGCAGCAGTAGT
AGCAATAGCAAAAATGCCAAGACCGCAAAGGCCATGAAGGCCATTGATAG
CCAAGTCAAGGTCAGCAGCCCGGCGGGAGGGACAGTTTCCTGTCCTTCCA
CGAGCAGCACAAGCACAACCAACACCAGCACCTGCACTTTCTCCTTGCGT
TCCTCCAGCCTCGTCATGCCCCCCGAGCCCTCCAGTACTGGGCCTGGTAA
GCGAAGGGGCTCCTTTCAACAGCAGGAACAGCAGTTTCCTCCACAGAAGC
AGGTACCAGTTGTCCTGTCGGAGGAGATGCGGCAAGCAGCAGCGCGACTC
TCCTCCATGCTCCTCTCAAAGAGTCTGCCAGGGATGGACCAACTCCTCAC
GTACGTGAGCTACTCCCAAGTTCAATGCCAAGAGCATTCGGGCCTCTTTA
CGCAGGCCATGGAGGCGTTAAAACACGAGCCGGCCCTCCGGAAGGACGTG
TGTGATTTCGAGCAAGTATTTAACTGTGCAGGCCTGGCGTACGGACAACG
TCCCTCCGCGGTATTTGCTGATTTGATAGACCCGAAGTTCCCCGTCGTAG
AGACATATCATGAACATGCTTTTCTACGATTATTCGTACAATTTGTCGTG
ACACGACTGCAGATGCTTAGGGGACTGGTGGTGGAGGAGGGAGGGAAGGA
GGGGAAGGAGGGGAAGGAGGGAGGGAAGGAGGAAGTGGCAGTGCTGGATC
TGTACTTAAAGATGTGGTGGCGACGGGCACGGGCGTATCTCTAGGGAGGG
AAGTGGAAGGGAGCCAATGCCACCAATGCCGAGAAAGGAGGAGGCGAGAG
GGCTTTGATAACGATGGCAACGAAAGACGGTAGAAGGCTTTTGGAGGGTG
TGGGAGTATGTAAGGAAAGAAAAGGTGTTGTGTGTGTGCAGGGAGAGAGT
TGGACAAGAGAATGAGAGTATCATTCGATGGATTTACAAATATATATATT
TGTGTAGGAAAGGACAGCGTGCAGAGAATTGTATTCATGTTGTTGGGCTG
TGGGTAGAAGGGGGGAGAAAGAACTTCGGCACAGTCAGGCATGGGAGAGG
GGGCTGTGAGGCTTAGGGTACAGAGAGGATACGGCGCACTGGTTTTGAAA
GGATGCGAAGCAAGCTGCGACCGGTGAAAAGGATGACTAGACATTTGTGC
CGATTCCTCCGTGTTGTACGCAAGGCGAGAGATGTGGACGCAGAAATTGT
AGGGAGATTTGTATTCTATGCCAGTCTCGAATTTCTCATTCATAATTCTG
GATATGGGTCGCCGATAGCATGGACTCCCGCCAACCGATTACGAGAGTGT
CTGTGGCCAGGGATTGATGTATTATTCTTCCCCCCATCTCGTGTGTGTGG
ATGTGTGTGTGAGAGTGTTTGTGTTTGTACGTAATATCGACAGCCGACGA
TAGTGTGAGGATCGTTTCTTACACGACGAGAGATCAATAATAAGCATCAG
AAAAGAGATATTCATTACGCTAATGGTATAAAGAAGACATGTATGTTATG
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protein sequence of NO13G01100.1

>NO13G01100.1-protein ID=NO13G01100.1-protein|Name=NO13G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MSSFAHPVFASSSKSGGSRRHGSNVLLAPWATASTTSSIPIKTIPHPSSP
PESPVHKSNTTQKGNSPAGISSTITKQYKHAPAPMLPGQMPAAVTGAGHH
QKPPSKVVHIVGSAGDEPKQGVKRRVIIGHRSTCKRIKTLVAEVVYPHGQ
AMQPPPPPRELEAPLILGFVPVGSSSSNGSSSSNSKNAKTAKAMKAIDSQ
VKVSSPAGGTVSCPSTSSTSTTNTSTCTFSLRSSSLVMPPEPSSTGPGKR
RGSFQQQEQQFPPQKQVPVVLSEEMRQAAARLSSMLLSKSLPGMDQLLTY
VSYSQVQCQEHSGLFTQAMEALKHEPALRKDVCDFEQVFNCAGLAYGQRP
SAVFADLIDPKFPVVETYHEHAFLRLFVQFVVTRLQMLRGLVVEEGGKEG
KEGKEGGKEEVAVLDLYLKMWWRRARAYL*
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mRNA from alignment at chr13:345262..348461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01100.1 ID=NO13G01100.1|Name=NO13G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3200bp|location=Sequence derived from alignment at chr13:345262..348461- (Nannochloropsis oceanica)
TTGGAAGCGCACGTTTCCTTTACATCACGCTGCATTTTTCTCAGAAGGAG GTCCTTTCGCGCACTGGTGGAATGTTGGGACGTTGGGCACAGGGGGCGAC GTGGCTGATTGCAGACGTCAATGTTGGCGTTGCTAGTACTGCGTCACTAT CACGTTATGTACCTGGATTGCCTTGTACATGGCGTCAAGTGCGTTTGTTT CGTGTCTCAACGACTGCCCATTTCGTTTCATGCTGCGCGTGCGTGCGTAA GTACTGTTCTTGTCATCTGAGGCTGAATGCTTTCCTTCCTGCTCTCGCCG ATTGCACTCATTGGCGCCATGCATGCCATCCGTAAGCAGCAAACTATGGA TACGGGTGGCTCCTCATCACCTTTATGGCTGCCTAGTTGCCGACTACGGT GAGAAGGGAGACGAGTCTTAAAAAAACACATGGGCCCTGGTGTCATATTT GAACCGCGATTTGAAAAGGAGGGTGTTGGTTACATTCGGTGCCTCCTCGC CTGTTGGAAAAAAGAGCCTTAACTTTTGGGGCCACGGCAATGCTACACAG TCTACTCGATATCATCGTGAGGGGTTGAGTAGACGATGTATTTGTCTTAC TTTGGCCTCTCCCCCCACCCCACTCCCCTTCCGAAGTGAGTTTTTGGCAC TCTTCCTCGTTGTCGAGTGATGGGATGAGGAGTGAGGAACGTTGAGGCTT GCTCTGAATGGACATTGCTGGGATTCTGATTTCGACTGGCCAGACCTTTG CCGATTCTACCTCTGGCTTGTACATCTCTTGCCCGTCGTGTTATGTGCAA TACCGTGCCTTGTTTAGCACTGGTATCTAGGCAGCGACCTTGACGGCTTG TTTGCTACAGTATTGTGACAGTGAGCGACGGAGGGAATCGCTGCAGCAGG CCTCACTTTCTCCTGTCCCATGGCCCCTGTCAAAATTACCAAGCCCTGTG TGGCACAGTGCGCTGAGCTGTCGGTATCCATACACTGCTCCGTTCTCTTC TGATCGCTCTCACATCACTCCCTGGCCCTGCTTTCCCCCACACGTGCAGG CTCACAAACTTCGACAGTTGCCGAGATAGTCGCTTGCTTCTCCCACCTCA AGTCCTTGACACAGGCACAACAACACACAGAGATCACGTACTAGATTGAA CACCATGTCTTCTTTCGCTCACCCTGTTTTCGCCAGCAGCAGCAAGAGCG GCGGCAGCCGCCGCCATGGCAGCAATGTTCTTTTAGCGCCATGGGCCACG GCGTCAACAACAAGCTCCATCCCCATCAAAACAATTCCCCACCCATCATC TCCCCCTGAGTCACCCGTCCACAAATCCAACACCACTCAGAAGGGGAATT CGCCCGCTGGCATTTCCTCCACCATCACCAAGCAATACAAGCACGCGCCT GCCCCCATGTTGCCGGGCCAAATGCCCGCAGCTGTGACGGGCGCCGGGCA TCACCAAAAGCCCCCATCCAAGGTTGTACACATTGTGGGTTCCGCGGGTG ACGAGCCGAAGCAAGGGGTGAAGCGACGTGTCATTATTGGTCACCGTTCT ACTTGCAAGCGAATAAAGACCCTTGTGGCCGAGGTGGTCTATCCACACGG CCAAGCCATGCAGCCGCCTCCCCCCCCGCGGGAGTTGGAGGCTCCCCTCA TCCTGGGCTTCGTGCCAGTGGGTAGTAGCAGTAGCAACGGCAGCAGTAGT AGCAATAGCAAAAATGCCAAGACCGCAAAGGCCATGAAGGCCATTGATAG CCAAGTCAAGGTCAGCAGCCCGGCGGGAGGGACAGTTTCCTGTCCTTCCA CGAGCAGCACAAGCACAACCAACACCAGCACCTGCACTTTCTCCTTGCGT TCCTCCAGCCTCGTCATGCCCCCCGAGCCCTCCAGTACTGGGCCTGGTAA GCGAAGGGGCTCCTTTCAACAGCAGGAACAGCAGTTTCCTCCACAGAAGC AGGTACCAGTTGTCCTGTCGGAGGAGATGCGGCAAGCAGCAGCGCGACTC TCCTCCATGCTCCTCTCAAAGAGTCTGCCAGGGATGGACCAACTCCTCAC GTACGTGAGCTACTCCCAAGTTCAATGCCAAGAGCATTCGGGCCTCTTTA CGCAGGCCATGGAGGCGTTAAAACACGAGCCGGCCCTCCGGAAGGACGTG TGTGATTTCGAGCAAGTATTTAACTGTGCAGGCCTGGCGTACGGACAACG TCCCTCCGCGGTATTTGCTGATTTGATAGACCCGAAGTTCCCCGTCGTAG AGACATATCATGAACATGCTTTTCTACGATTATTCGTACAATTTGTCGTG ACACGACTGCAGATGCTTAGGGGACTGGTGGTGGAGGAGGGAGGGAAGGA GGGGAAGGAGGGGAAGGAGGGAGGGAAGGAGGAAGTGGCAGTGCTGGATC TGTACTTAAAGATGTGGTGGCGACGGGCACGGGCGTATCTCTAGGGAGGG AAGTGGAAGGGAGCCAATGCCACCAATGCCGAGAAAGGAGGAGGCGAGAG GGCTTTGATAACGATGGCAACGAAAGACGGTAGAAGGCTTTTGGAGGGTG TGGGAGTATGTAAGGAAAGAAAAGGTGTTGTGTGTGTGCAGGGAGAGAGT TGGACAAGAGAATGAGAGTATCATTCGATGGATTTACAAATATATATATT TGTGTAGGAAAGGACAGCGTGCAGAGAATTGTATTCATGTTGTTGGGCTG TGGGTAGAAGGGGGGAGAAAGAACTTCGGCACAGTCAGGCATGGGAGAGG GGGCTGTGAGGCTTAGGGTACAGAGAGGATACGGCGCACTGGTTTTGAAA GGATGCGAAGCAAGCTGCGACCGGTGAAAAGGATGACTAGACATTTGTGC CGATTCCTCCGTGTTGTACGCAAGGCGAGAGATGTGGACGCAGAAATTGT AGGGAGATTTGTATTCTATGCCAGTCTCGAATTTCTCATTCATAATTCTG GATATGGGTCGCCGATAGCATGGACTCCCGCCAACCGATTACGAGAGTGT CTGTGGCCAGGGATTGATGTATTATTCTTCCCCCCATCTCGTGTGTGTGG ATGTGTGTGTGAGAGTGTTTGTGTTTGTACGTAATATCGACAGCCGACGA TAGTGTGAGGATCGTTTCTTACACGACGAGAGATCAATAATAAGCATCAG AAAAGAGATATTCATTACGCTAATGGTATAAAGAAGACATGTATGTTATG
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Coding sequence (CDS) from alignment at chr13:345262..348461-

>NO13G01100.1 ID=NO13G01100.1|Name=NO13G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr13:345262..348461- (Nannochloropsis oceanica)
ATGTCTTCTTTCGCTCACCCTGTTTTCGCCAGCAGCAGCAAGAGCGGCGG
CAGCCGCCGCCATGGCAGCAATGTTCTTTTAGCGCCATGGGCCACGGCGT
CAACAACAAGCTCCATCCCCATCAAAACAATTCCCCACCCATCATCTCCC
CCTGAGTCACCCGTCCACAAATCCAACACCACTCAGAAGGGGAATTCGCC
CGCTGGCATTTCCTCCACCATCACCAAGCAATACAAGCACGCGCCTGCCC
CCATGTTGCCGGGCCAAATGCCCGCAGCTGTGACGGGCGCCGGGCATCAC
CAAAAGCCCCCATCCAAGGTTGTACACATTGTGGGTTCCGCGGGTGACGA
GCCGAAGCAAGGGGTGAAGCGACGTGTCATTATTGGTCACCGTTCTACTT
GCAAGCGAATAAAGACCCTTGTGGCCGAGGTGGTCTATCCACACGGCCAA
GCCATGCAGCCGCCTCCCCCCCCGCGGGAGTTGGAGGCTCCCCTCATCCT
GGGCTTCGTGCCAGTGGGTAGTAGCAGTAGCAACGGCAGCAGTAGTAGCA
ATAGCAAAAATGCCAAGACCGCAAAGGCCATGAAGGCCATTGATAGCCAA
GTCAAGGTCAGCAGCCCGGCGGGAGGGACAGTTTCCTGTCCTTCCACGAG
CAGCACAAGCACAACCAACACCAGCACCTGCACTTTCTCCTTGCGTTCCT
CCAGCCTCGTCATGCCCCCCGAGCCCTCCAGTACTGGGCCTGGTAAGCGA
AGGGGCTCCTTTCAACAGCAGGAACAGCAGTTTCCTCCACAGAAGCAGGT
ACCAGTTGTCCTGTCGGAGGAGATGCGGCAAGCAGCAGCGCGACTCTCCT
CCATGCTCCTCTCAAAGAGTCTGCCAGGGATGGACCAACTCCTCACGTAC
GTGAGCTACTCCCAAGTTCAATGCCAAGAGCATTCGGGCCTCTTTACGCA
GGCCATGGAGGCGTTAAAACACGAGCCGGCCCTCCGGAAGGACGTGTGTG
ATTTCGAGCAAGTATTTAACTGTGCAGGCCTGGCGTACGGACAACGTCCC
TCCGCGGTATTTGCTGATTTGATAGACCCGAAGTTCCCCGTCGTAGAGAC
ATATCATGAACATGCTTTTCTACGATTATTCGTACAATTTGTCGTGACAC
GACTGCAGATGCTTAGGGGACTGGTGGTGGAGGAGGGAGGGAAGGAGGGG
AAGGAGGGGAAGGAGGGAGGGAAGGAGGAAGTGGCAGTGCTGGATCTGTA
CTTAAAGATGTGGTGGCGACGGGCACGGGCGTATCTCTAG
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Synonyms
Publications