|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:345262..348461 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01100.1 vs.
Match: EWM21775.1 (hypothetical protein Naga_100188g2 [Nannochloropsis gaditana]) HSP 1 Score: 322.0 bits (824), Expect = 2.800e-84 Identity = 195/432 (45.14%), Postives = 276/432 (63.89%), Query Frame = 0
Query: 1 MSSFAHPVFASSSKSGGSRRHGSNVLLAPWATASTTSSIPIKTIPHPSSPPESPVHKSNTTQKGNSPAGISSTIT--KQYKHAPAPMLPGQMPAAVTGAGHHQKPPSKVVHIVGSAGDEPKQGVKRRVIIGHRSTCKRIKTLVAEVVYPHGQAMQPPPPPRELEAPLILGFVPVGSSSSNGSSSSNSKNAKTAKAMKAIDSQVKVSSPAGGTVSCPSTSSTSTTNT-STCTFSLRSSSLVMPPEPSSTGPGKRRGSFQQQEQQFPPQKQVPVVLSEEMRQAAARLSSMLLSKSLPGMDQLLTYVSYSQVQCQEHSGLFTQAMEALKHEPALRKDVCDFEQVFNCAGLAYGQRPSAVFADLIDPKFPVVETYHEHAFLRLFVQFVVTRLQMLRGLVVEEGGKEGKEGKEGGKEEVAVLDLYLKMWWRRARAYL 430
M S A P+ A+S+ S+ S++L AP A A+ + S+P K + +P+ K ++ GI+S+ ++ K+AP + PG++ AAVTGAGHH+K ++ IVG+ + P+ GVKRR + H S+CKR+K++VAEVV+PHGQ QPPPPPR LE P ILG P S++++ S + + +++ AKAMK ID QVK S+ G PS+ S ++ +T S CT SLRSSS P+ G G ++ P + VPVVL+E M A R+S+ LL+ L GM QLL++V+ +QVQCQEH LF AM+ + PALRKD CDFE+V++C + YG+RPSA+FADLIDP+FPVV TYH+H FLRLF+ + VTRLQ+LR +V+E+ G EEV ++D +LK W++RA AYL
Sbjct: 1 MPSVAAPLCAASN----SKSVMSSILSAPAAWAADSVSLPAKKESPNKATSSTPLKKRKSSHDDTLSPGITSSEPPIRRPKYAPTALSPGKISAAVTGAGHHKKVLPTIIRIVGACNESPRMGVKRRALTAHPSSCKRVKSMVAEVVHPHGQDTQPPPPPRPLEEPFILGVPPTCSNNNSSSGKNGNNSSRVAKAMKDIDMQVKSSN--GSMNGSPSSGSVNSVSTPSKCTLSLRSSSQGSISPPTLRGRGSAA-------KEQPAPEPVPVVLTEVMEDAMDRISTRLLADDLAGMAQLLSFVAQAQVQCQEHLELFNMAMKKVNEAPALRKDFCDFEKVWSCVDVVYGRRPSAIFADLIDPRFPVVHTYHQHIFLRLFMHYAVTRLQLLRDMVMEKSGGP-------DVEEVGLVDTFLKFWFQRAPAYL 412
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01100.1 ID=NO13G01100.1|Name=NO13G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3200bp TTGGAAGCGCACGTTTCCTTTACATCACGCTGCATTTTTCTCAGAAGGAG GTCCTTTCGCGCACTGGTGGAATGTTGGGACGTTGGGCACAGGGGGCGAC GTGGCTGATTGCAGACGTCAATGTTGGCGTTGCTAGTACTGCGTCACTAT CACGTTATGTACCTGGATTGCCTTGTACATGGCGTCAAGTGCGTTTGTTT CGTGTCTCAACGACTGCCCATTTCGTTTCATGCTGCGCGTGCGTGCGTAA GTACTGTTCTTGTCATCTGAGGCTGAATGCTTTCCTTCCTGCTCTCGCCG ATTGCACTCATTGGCGCCATGCATGCCATCCGTAAGCAGCAAACTATGGA TACGGGTGGCTCCTCATCACCTTTATGGCTGCCTAGTTGCCGACTACGGT GAGAAGGGAGACGAGTCTTAAAAAAACACATGGGCCCTGGTGTCATATTT GAACCGCGATTTGAAAAGGAGGGTGTTGGTTACATTCGGTGCCTCCTCGC CTGTTGGAAAAAAGAGCCTTAACTTTTGGGGCCACGGCAATGCTACACAG TCTACTCGATATCATCGTGAGGGGTTGAGTAGACGATGTATTTGTCTTAC TTTGGCCTCTCCCCCCACCCCACTCCCCTTCCGAAGTGAGTTTTTGGCAC TCTTCCTCGTTGTCGAGTGATGGGATGAGGAGTGAGGAACGTTGAGGCTT GCTCTGAATGGACATTGCTGGGATTCTGATTTCGACTGGCCAGACCTTTG CCGATTCTACCTCTGGCTTGTACATCTCTTGCCCGTCGTGTTATGTGCAA TACCGTGCCTTGTTTAGCACTGGTATCTAGGCAGCGACCTTGACGGCTTG TTTGCTACAGTATTGTGACAGTGAGCGACGGAGGGAATCGCTGCAGCAGG CCTCACTTTCTCCTGTCCCATGGCCCCTGTCAAAATTACCAAGCCCTGTG TGGCACAGTGCGCTGAGCTGTCGGTATCCATACACTGCTCCGTTCTCTTC TGATCGCTCTCACATCACTCCCTGGCCCTGCTTTCCCCCACACGTGCAGG CTCACAAACTTCGACAGTTGCCGAGATAGTCGCTTGCTTCTCCCACCTCA AGTCCTTGACACAGGCACAACAACACACAGAGATCACGTACTAGATTGAA CACCATGTCTTCTTTCGCTCACCCTGTTTTCGCCAGCAGCAGCAAGAGCG GCGGCAGCCGCCGCCATGGCAGCAATGTTCTTTTAGCGCCATGGGCCACG GCGTCAACAACAAGCTCCATCCCCATCAAAACAATTCCCCACCCATCATC TCCCCCTGAGTCACCCGTCCACAAATCCAACACCACTCAGAAGGGGAATT CGCCCGCTGGCATTTCCTCCACCATCACCAAGCAATACAAGCACGCGCCT GCCCCCATGTTGCCGGGCCAAATGCCCGCAGCTGTGACGGGCGCCGGGCA TCACCAAAAGCCCCCATCCAAGGTTGTACACATTGTGGGTTCCGCGGGTG ACGAGCCGAAGCAAGGGGTGAAGCGACGTGTCATTATTGGTCACCGTTCT ACTTGCAAGCGAATAAAGACCCTTGTGGCCGAGGTGGTCTATCCACACGG CCAAGCCATGCAGCCGCCTCCCCCCCCGCGGGAGTTGGAGGCTCCCCTCA TCCTGGGCTTCGTGCCAGTGGGTAGTAGCAGTAGCAACGGCAGCAGTAGT AGCAATAGCAAAAATGCCAAGACCGCAAAGGCCATGAAGGCCATTGATAG CCAAGTCAAGGTCAGCAGCCCGGCGGGAGGGACAGTTTCCTGTCCTTCCA CGAGCAGCACAAGCACAACCAACACCAGCACCTGCACTTTCTCCTTGCGT TCCTCCAGCCTCGTCATGCCCCCCGAGCCCTCCAGTACTGGGCCTGGTAA GCGAAGGGGCTCCTTTCAACAGCAGGAACAGCAGTTTCCTCCACAGAAGC AGGTACCAGTTGTCCTGTCGGAGGAGATGCGGCAAGCAGCAGCGCGACTC TCCTCCATGCTCCTCTCAAAGAGTCTGCCAGGGATGGACCAACTCCTCAC GTACGTGAGCTACTCCCAAGTTCAATGCCAAGAGCATTCGGGCCTCTTTA CGCAGGCCATGGAGGCGTTAAAACACGAGCCGGCCCTCCGGAAGGACGTG TGTGATTTCGAGCAAGTATTTAACTGTGCAGGCCTGGCGTACGGACAACG TCCCTCCGCGGTATTTGCTGATTTGATAGACCCGAAGTTCCCCGTCGTAG AGACATATCATGAACATGCTTTTCTACGATTATTCGTACAATTTGTCGTG ACACGACTGCAGATGCTTAGGGGACTGGTGGTGGAGGAGGGAGGGAAGGA GGGGAAGGAGGGGAAGGAGGGAGGGAAGGAGGAAGTGGCAGTGCTGGATC TGTACTTAAAGATGTGGTGGCGACGGGCACGGGCGTATCTCTAGGGAGGG AAGTGGAAGGGAGCCAATGCCACCAATGCCGAGAAAGGAGGAGGCGAGAG GGCTTTGATAACGATGGCAACGAAAGACGGTAGAAGGCTTTTGGAGGGTG TGGGAGTATGTAAGGAAAGAAAAGGTGTTGTGTGTGTGCAGGGAGAGAGT TGGACAAGAGAATGAGAGTATCATTCGATGGATTTACAAATATATATATT TGTGTAGGAAAGGACAGCGTGCAGAGAATTGTATTCATGTTGTTGGGCTG TGGGTAGAAGGGGGGAGAAAGAACTTCGGCACAGTCAGGCATGGGAGAGG GGGCTGTGAGGCTTAGGGTACAGAGAGGATACGGCGCACTGGTTTTGAAA GGATGCGAAGCAAGCTGCGACCGGTGAAAAGGATGACTAGACATTTGTGC CGATTCCTCCGTGTTGTACGCAAGGCGAGAGATGTGGACGCAGAAATTGT AGGGAGATTTGTATTCTATGCCAGTCTCGAATTTCTCATTCATAATTCTG GATATGGGTCGCCGATAGCATGGACTCCCGCCAACCGATTACGAGAGTGT CTGTGGCCAGGGATTGATGTATTATTCTTCCCCCCATCTCGTGTGTGTGG ATGTGTGTGTGAGAGTGTTTGTGTTTGTACGTAATATCGACAGCCGACGA TAGTGTGAGGATCGTTTCTTACACGACGAGAGATCAATAATAAGCATCAG AAAAGAGATATTCATTACGCTAATGGTATAAAGAAGACATGTATGTTATG back to topprotein sequence of NO13G01100.1 >NO13G01100.1-protein ID=NO13G01100.1-protein|Name=NO13G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp MSSFAHPVFASSSKSGGSRRHGSNVLLAPWATASTTSSIPIKTIPHPSSP PESPVHKSNTTQKGNSPAGISSTITKQYKHAPAPMLPGQMPAAVTGAGHH QKPPSKVVHIVGSAGDEPKQGVKRRVIIGHRSTCKRIKTLVAEVVYPHGQ AMQPPPPPRELEAPLILGFVPVGSSSSNGSSSSNSKNAKTAKAMKAIDSQ VKVSSPAGGTVSCPSTSSTSTTNTSTCTFSLRSSSLVMPPEPSSTGPGKR RGSFQQQEQQFPPQKQVPVVLSEEMRQAAARLSSMLLSKSLPGMDQLLTY VSYSQVQCQEHSGLFTQAMEALKHEPALRKDVCDFEQVFNCAGLAYGQRP SAVFADLIDPKFPVVETYHEHAFLRLFVQFVVTRLQMLRGLVVEEGGKEG KEGKEGGKEEVAVLDLYLKMWWRRARAYL* back to topmRNA from alignment at chr13:345262..348461- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01100.1 ID=NO13G01100.1|Name=NO13G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3200bp|location=Sequence derived from alignment at chr13:345262..348461- (Nannochloropsis oceanica) TTGGAAGCGCACGTTTCCTTTACATCACGCTGCATTTTTCTCAGAAGGAG
GTCCTTTCGCGCACTGGTGGAATGTTGGGACGTTGGGCACAGGGGGCGAC
GTGGCTGATTGCAGACGTCAATGTTGGCGTTGCTAGTACTGCGTCACTAT
CACGTTATGTACCTGGATTGCCTTGTACATGGCGTCAAGTGCGTTTGTTT
CGTGTCTCAACGACTGCCCATTTCGTTTCATGCTGCGCGTGCGTGCGTAA
GTACTGTTCTTGTCATCTGAGGCTGAATGCTTTCCTTCCTGCTCTCGCCG
ATTGCACTCATTGGCGCCATGCATGCCATCCGTAAGCAGCAAACTATGGA
TACGGGTGGCTCCTCATCACCTTTATGGCTGCCTAGTTGCCGACTACGGT
GAGAAGGGAGACGAGTCTTAAAAAAACACATGGGCCCTGGTGTCATATTT
GAACCGCGATTTGAAAAGGAGGGTGTTGGTTACATTCGGTGCCTCCTCGC
CTGTTGGAAAAAAGAGCCTTAACTTTTGGGGCCACGGCAATGCTACACAG
TCTACTCGATATCATCGTGAGGGGTTGAGTAGACGATGTATTTGTCTTAC
TTTGGCCTCTCCCCCCACCCCACTCCCCTTCCGAAGTGAGTTTTTGGCAC
TCTTCCTCGTTGTCGAGTGATGGGATGAGGAGTGAGGAACGTTGAGGCTT
GCTCTGAATGGACATTGCTGGGATTCTGATTTCGACTGGCCAGACCTTTG
CCGATTCTACCTCTGGCTTGTACATCTCTTGCCCGTCGTGTTATGTGCAA
TACCGTGCCTTGTTTAGCACTGGTATCTAGGCAGCGACCTTGACGGCTTG
TTTGCTACAGTATTGTGACAGTGAGCGACGGAGGGAATCGCTGCAGCAGG
CCTCACTTTCTCCTGTCCCATGGCCCCTGTCAAAATTACCAAGCCCTGTG
TGGCACAGTGCGCTGAGCTGTCGGTATCCATACACTGCTCCGTTCTCTTC
TGATCGCTCTCACATCACTCCCTGGCCCTGCTTTCCCCCACACGTGCAGG
CTCACAAACTTCGACAGTTGCCGAGATAGTCGCTTGCTTCTCCCACCTCA
AGTCCTTGACACAGGCACAACAACACACAGAGATCACGTACTAGATTGAA
CACCATGTCTTCTTTCGCTCACCCTGTTTTCGCCAGCAGCAGCAAGAGCG
GCGGCAGCCGCCGCCATGGCAGCAATGTTCTTTTAGCGCCATGGGCCACG
GCGTCAACAACAAGCTCCATCCCCATCAAAACAATTCCCCACCCATCATC
TCCCCCTGAGTCACCCGTCCACAAATCCAACACCACTCAGAAGGGGAATT
CGCCCGCTGGCATTTCCTCCACCATCACCAAGCAATACAAGCACGCGCCT
GCCCCCATGTTGCCGGGCCAAATGCCCGCAGCTGTGACGGGCGCCGGGCA
TCACCAAAAGCCCCCATCCAAGGTTGTACACATTGTGGGTTCCGCGGGTG
ACGAGCCGAAGCAAGGGGTGAAGCGACGTGTCATTATTGGTCACCGTTCT
ACTTGCAAGCGAATAAAGACCCTTGTGGCCGAGGTGGTCTATCCACACGG
CCAAGCCATGCAGCCGCCTCCCCCCCCGCGGGAGTTGGAGGCTCCCCTCA
TCCTGGGCTTCGTGCCAGTGGGTAGTAGCAGTAGCAACGGCAGCAGTAGT
AGCAATAGCAAAAATGCCAAGACCGCAAAGGCCATGAAGGCCATTGATAG
CCAAGTCAAGGTCAGCAGCCCGGCGGGAGGGACAGTTTCCTGTCCTTCCA
CGAGCAGCACAAGCACAACCAACACCAGCACCTGCACTTTCTCCTTGCGT
TCCTCCAGCCTCGTCATGCCCCCCGAGCCCTCCAGTACTGGGCCTGGTAA
GCGAAGGGGCTCCTTTCAACAGCAGGAACAGCAGTTTCCTCCACAGAAGC
AGGTACCAGTTGTCCTGTCGGAGGAGATGCGGCAAGCAGCAGCGCGACTC
TCCTCCATGCTCCTCTCAAAGAGTCTGCCAGGGATGGACCAACTCCTCAC
GTACGTGAGCTACTCCCAAGTTCAATGCCAAGAGCATTCGGGCCTCTTTA
CGCAGGCCATGGAGGCGTTAAAACACGAGCCGGCCCTCCGGAAGGACGTG
TGTGATTTCGAGCAAGTATTTAACTGTGCAGGCCTGGCGTACGGACAACG
TCCCTCCGCGGTATTTGCTGATTTGATAGACCCGAAGTTCCCCGTCGTAG
AGACATATCATGAACATGCTTTTCTACGATTATTCGTACAATTTGTCGTG
ACACGACTGCAGATGCTTAGGGGACTGGTGGTGGAGGAGGGAGGGAAGGA
GGGGAAGGAGGGGAAGGAGGGAGGGAAGGAGGAAGTGGCAGTGCTGGATC
TGTACTTAAAGATGTGGTGGCGACGGGCACGGGCGTATCTCTAGGGAGGG
AAGTGGAAGGGAGCCAATGCCACCAATGCCGAGAAAGGAGGAGGCGAGAG
GGCTTTGATAACGATGGCAACGAAAGACGGTAGAAGGCTTTTGGAGGGTG
TGGGAGTATGTAAGGAAAGAAAAGGTGTTGTGTGTGTGCAGGGAGAGAGT
TGGACAAGAGAATGAGAGTATCATTCGATGGATTTACAAATATATATATT
TGTGTAGGAAAGGACAGCGTGCAGAGAATTGTATTCATGTTGTTGGGCTG
TGGGTAGAAGGGGGGAGAAAGAACTTCGGCACAGTCAGGCATGGGAGAGG
GGGCTGTGAGGCTTAGGGTACAGAGAGGATACGGCGCACTGGTTTTGAAA
GGATGCGAAGCAAGCTGCGACCGGTGAAAAGGATGACTAGACATTTGTGC
CGATTCCTCCGTGTTGTACGCAAGGCGAGAGATGTGGACGCAGAAATTGT
AGGGAGATTTGTATTCTATGCCAGTCTCGAATTTCTCATTCATAATTCTG
GATATGGGTCGCCGATAGCATGGACTCCCGCCAACCGATTACGAGAGTGT
CTGTGGCCAGGGATTGATGTATTATTCTTCCCCCCATCTCGTGTGTGTGG
ATGTGTGTGTGAGAGTGTTTGTGTTTGTACGTAATATCGACAGCCGACGA
TAGTGTGAGGATCGTTTCTTACACGACGAGAGATCAATAATAAGCATCAG
AAAAGAGATATTCATTACGCTAATGGTATAAAGAAGACATGTATGTTATG
back to topCoding sequence (CDS) from alignment at chr13:345262..348461- >NO13G01100.1 ID=NO13G01100.1|Name=NO13G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr13:345262..348461- (Nannochloropsis oceanica) ATGTCTTCTTTCGCTCACCCTGTTTTCGCCAGCAGCAGCAAGAGCGGCGG CAGCCGCCGCCATGGCAGCAATGTTCTTTTAGCGCCATGGGCCACGGCGT CAACAACAAGCTCCATCCCCATCAAAACAATTCCCCACCCATCATCTCCC CCTGAGTCACCCGTCCACAAATCCAACACCACTCAGAAGGGGAATTCGCC CGCTGGCATTTCCTCCACCATCACCAAGCAATACAAGCACGCGCCTGCCC CCATGTTGCCGGGCCAAATGCCCGCAGCTGTGACGGGCGCCGGGCATCAC CAAAAGCCCCCATCCAAGGTTGTACACATTGTGGGTTCCGCGGGTGACGA GCCGAAGCAAGGGGTGAAGCGACGTGTCATTATTGGTCACCGTTCTACTT GCAAGCGAATAAAGACCCTTGTGGCCGAGGTGGTCTATCCACACGGCCAA GCCATGCAGCCGCCTCCCCCCCCGCGGGAGTTGGAGGCTCCCCTCATCCT GGGCTTCGTGCCAGTGGGTAGTAGCAGTAGCAACGGCAGCAGTAGTAGCA ATAGCAAAAATGCCAAGACCGCAAAGGCCATGAAGGCCATTGATAGCCAA GTCAAGGTCAGCAGCCCGGCGGGAGGGACAGTTTCCTGTCCTTCCACGAG CAGCACAAGCACAACCAACACCAGCACCTGCACTTTCTCCTTGCGTTCCT CCAGCCTCGTCATGCCCCCCGAGCCCTCCAGTACTGGGCCTGGTAAGCGA AGGGGCTCCTTTCAACAGCAGGAACAGCAGTTTCCTCCACAGAAGCAGGT ACCAGTTGTCCTGTCGGAGGAGATGCGGCAAGCAGCAGCGCGACTCTCCT CCATGCTCCTCTCAAAGAGTCTGCCAGGGATGGACCAACTCCTCACGTAC GTGAGCTACTCCCAAGTTCAATGCCAAGAGCATTCGGGCCTCTTTACGCA GGCCATGGAGGCGTTAAAACACGAGCCGGCCCTCCGGAAGGACGTGTGTG ATTTCGAGCAAGTATTTAACTGTGCAGGCCTGGCGTACGGACAACGTCCC TCCGCGGTATTTGCTGATTTGATAGACCCGAAGTTCCCCGTCGTAGAGAC ATATCATGAACATGCTTTTCTACGATTATTCGTACAATTTGTCGTGACAC GACTGCAGATGCTTAGGGGACTGGTGGTGGAGGAGGGAGGGAAGGAGGGG AAGGAGGGGAAGGAGGGAGGGAAGGAGGAAGTGGCAGTGCTGGATCTGTA CTTAAAGATGTGGTGGCGACGGGCACGGGCGTATCTCTAG back to top
|