NO13G01080, NO13G01080 (gene) Nannochloropsis oceanica

Overview
NameNO13G01080
Unique NameNO13G01080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length786
Alignment locationchr13:342091..342876 +

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Properties
Property NameValue
DescriptionDIX domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:342091..342876 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR001158DIX
Homology
BLAST of NO13G01080 vs. NCBI_GenBank
Match: EWM21779.1 (DIX domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 165.2 bits (417), Expect = 2.700e-37
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 0
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKPTAAG 99
            MIRYYIPGDGDDA+HPNIFHLPPS + PP LRDVRQ+FPLPG YHFRFK RL+GTPD K VW D+TED AE+P  DG  +AKVSR+ M++ +KPTAAG
Sbjct:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKPTAAG 98          
BLAST of NO13G01080 vs. NCBI_GenBank
Match: CBN75002.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5 bits (236), Expect = 2.600e-16
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 0
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLR--DVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLS 88
            MIRY+IP DGDD +HPN+F LP       ++R  DV ++FPLPG YHFRFKK+      +  VW DI +  A +P CDG   AK++RLS
Sbjct:    1 MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRYHFRFKKKFR----DAFVWVDIADPGAAVPSCDGVFTAKITRLS 85          
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_012898418.1 (uncharacterized protein [Blastocystis hominis] >CBK24370.2 unnamed protein product [Blastocystis hominis])

HSP 1 Score: 88.2 bits (217), Expect = 4.100e-14
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 0
Query:    2 IRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRL 87
            + YYIP DGD+A HPN+  L  +A +  TL+D+R+ FP+PG Y+FRFK+    T  N  +WFD+TED+  +P  DG I  K +RL
Sbjct:    7 VLYYIPEDGDEADHPNVMTLDKNA-SQVTLKDIREAFPIPGTYYFRFKR----TFKNSWIWFDVTEDSEVVPKFDGLIFVKATRL 86          
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_014529765.1 (hypothetical protein JH06_0829 [Blastocystis sp. subtype 4] >KNB46324.1 hypothetical protein JH06_0829 [Blastocystis sp. subtype 4])

HSP 1 Score: 85.9 bits (211), Expect = 2.000e-13
Identity = 38/86 (44.19%), Postives = 58/86 (67.44%), Query Frame = 0
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRL 87
            +I+YYIP DGDD  HPN++ +   +    T+ D+R +FP+PG Y+FRFK+  + T     +WFD+++D   +P  DGTI+ KV+RL
Sbjct:    6 VIQYYIPEDGDDMDHPNVYSIDKKS-TTITVTDIRNSFPIPGTYYFRFKRAFKKT----WIWFDVSKDDEVVPSFDGTIMMKVTRL 86          
BLAST of NO13G01080 vs. NCBI_GenBank
Match: OEU10509.1 (hypothetical protein FRACYDRAFT_271062 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 84.7 bits (208), Expect = 4.600e-13
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 0
Query:    2 IRYYIPGDGDDATHPNIFHLPPSARN---PPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNK----PVWFDITEDTAEIPVCDGTILAKVSRLSM 89
            IRY++P DGD  + PN+F L P  R+   PP    VR +FPLPG YHFRFK  L    D +    PVW D  E+   +P   G+I+AKV+R++M
Sbjct:    4 IRYFVPEDGDIESEPNVF-LAPKPRHPGTPPAFGQVRDSFPLPGQYHFRFKSALIPGSDREKGAMPVWMDFAEERQPVPTWMGSIVAKVTRINM 96          
BLAST of NO13G01080 vs. NCBI_GenBank
Match: CCA21458.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 84.0 bits (206), Expect = 7.800e-13
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRL 87
            M+ Y+IP DGD + H N+  LP  A +  TL+ V++NFPLPG +HFRFK + EGT     VW D+T+    +P  DG I++K+SR+
Sbjct:    4 MLNYFIPEDGDTSDHMNVVPLP--AVDQLTLKHVKENFPLPGDFHFRFKTQFEGT----YVWLDLTDGNDVVPSYDGIIVSKISRI 83          
BLAST of NO13G01080 vs. NCBI_GenBank
Match: CEL98194.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 84.0 bits (206), Expect = 7.800e-13
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPP--TLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLS 88
            +I Y++PGD DD  HPN F   P  ++P    L+DV+Q FPLPG YHFRFK R E    +  VW D+T D + +P+ +  ++AKV R+S
Sbjct:   16 LIHYHLPGDKDDPDHPNAF---PILKSPEEIKLKDVKQKFPLPGVYHFRFKYRQE----SSFVWIDVTNDDSRVPMFNQKVVAKVLRIS 97          
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_002286403.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96044.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.4 bits (202), Expect = 2.300e-12
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0
Query:    2 IRYYIPGDGDDATHPNIFHLPPSAR--NPPTLRDVRQNFPLPGAYHFRFKKRL-EGTPDNK---PVWFDITEDTAEIPVCDGTILAKVSRL 87
            +RY++P DGD    PN+F  P  +R   PP L  ++ +FPLPGA+HFRFK  L  GT   K    VW D TE+   +PV  G I+AKV+R+
Sbjct:    4 VRYFLPEDGDIEDTPNVFLAPKPSRPGYPPLLGQIKDSFPLPGAFHFRFKTALVPGTDREKHAVAVWMDCTEEEEPVPVWQGAIVAKVTRI 94          
BLAST of NO13G01080 vs. NCBI_GenBank
Match: OWZ23639.1 (hypothetical protein PHMEG_0001443 [Phytophthora megakarya])

HSP 1 Score: 82.0 bits (201), Expect = 3.000e-12
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 0
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKPTAAGRTGFP 104
            M+ YY+P DGD + H N+  LP   +    L+ V+++FPLPGA+HFRFK   EGT     VW D+  D   +P  +G ++ K+SR+    S +P  A RT  P
Sbjct:    4 MLNYYVPEDGDSSDHLNVVPLPRVEQ--LRLQHVKKSFPLPGAFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVICKISRVQRQSSTRP--AERTETP 98          
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_009827538.1 (hypothetical protein H257_04644 [Aphanomyces astaci] >ETV82867.1 hypothetical protein H257_04644 [Aphanomyces astaci])

HSP 1 Score: 81.6 bits (200), Expect = 3.900e-12
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 0
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKPTA 97
            M  Y+IP DGD   H NIF +P   +N   L  +++ FP+PG +HFRFK+  EGT     VW D+ +D   +P  +G I++K+SR+S      P+A
Sbjct:    4 MFNYFIPDDGDTPDHLNIFPIPSQHKNSLKLSHIKKEFPIPGQFHFRFKQAFEGT----YVWLDVDDDD-PVPDFNGLIISKISRISDSEVPSPSA 94          
The following BLAST results are available for this feature:
BLAST of NO13G01080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21779.12.700e-3773.47DIX domain containing protein [Nannochloropsis gad... [more]
CBN75002.12.600e-1650.56conserved unknown protein [Ectocarpus siliculosus][more]
XP_012898418.14.100e-1448.24uncharacterized protein [Blastocystis hominis] >CB... [more]
XP_014529765.12.000e-1344.19hypothetical protein JH06_0829 [Blastocystis sp. s... [more]
OEU10509.14.600e-1345.74hypothetical protein FRACYDRAFT_271062 [Fragilario... [more]
CCA21458.17.800e-1346.51conserved hypothetical protein [Albugo laibachii N... [more]
CEL98194.17.800e-1346.07unnamed protein product [Vitrella brassicaformis C... [more]
XP_002286403.12.300e-1246.15predicted protein [Thalassiosira pseudonana CCMP13... [more]
OWZ23639.13.000e-1240.78hypothetical protein PHMEG_0001443 [Phytophthora m... [more]
XP_009827538.13.900e-1240.63hypothetical protein H257_04644 [Aphanomyces astac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001786NSK001786Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01080.1NO13G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100188g5gene8653Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01080.1NO13G01080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01080 ID=NO13G01080|Name=NO13G01080|organism=Nannochloropsis oceanica|type=gene|length=786bp
ATGATCCGGTACTACATCCCGGGCGACGGGGACGACGCGACCCACCCCAA
CATCTTCCATCTACCACCTTCTGCCCGCAACCCCCCCACGCTCCGCGATG
TCCGCCAGAACTTCCCTCTACCGGGCGCGTACCATTTCCGATTCAAGAAG
CGTTTGGAGGGCACCCCAGATAACAAACCCGTTTGGTTTGACATTACGGA
AGACACCGCGGAGATCCCTGTGTGTGATGGCACCATCCTCGCCAAAGTCT
CGAGATTGAGTATGGATGTTTCAGCTAAGCCTACCGCCGCGGGGAGAACA
GGCTTCCCCTCTTCTTCCTCCACTTCCCCATCGTCTTCCTCACATTCCAA
CTCTGGGACCTCCTCCTCACCAACCACGCAATCTGCCGCGTCGCCTGTCT
CGAGGGCCACACCGCCTACAGGCGGCAGCAGTAGCAGCAGCCGACACTTG
CCGACCCCTCCCGACAGTGACCCCTTCGGTTTGTTTCACGAAGCTCCCAC
GGCACCGACGGGTGGTGGTGGAGTCCAGCGAAACGTCAGTGCGCCCATGA
GCAACAACGGCCACTCCCCGTCAATGTCCATGCAAAGACCGCAAGGCGGG
GGAGGAGGAGGAGGAGGAGGGAAAGCAGACTTACTCGATTTCGATGCTTT
TGGGAGTCATCCCCCTGCTGCTCCTCAAAAGCGGCCCATGTCTGGGACTC
CTCCTCCTCCTCATCATCATCATCAGCAGCAGCAGCCGCCGCCAAGGGGC
TACCCGCCTTCGTCGTCGGGGGGTGGGTGGATGTGA
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protein sequence of NO13G01080.1

>NO13G01080.1-protein ID=NO13G01080.1-protein|Name=NO13G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKK
RLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKPTAAGRT
GFPSSSSTSPSSSSHSNSGTSSSPTTQSAASPVSRATPPTGGSSSSSRHL
PTPPDSDPFGLFHEAPTAPTGGGGVQRNVSAPMSNNGHSPSMSMQRPQGG
GGGGGGGKADLLDFDAFGSHPPAAPQKRPMSGTPPPPHHHHQQQQPPPRG
YPPSSSGGGWM*
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Synonyms
Publications