NO13G01080.1, NO13G01080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01080.1
Unique NameNO13G01080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length786
Alignment locationchr13:342091..342876 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:342091..342876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G01080.1 vs.
Match: EWM21779.1 (DIX domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 226.1 bits (575), Expect = 1.300e-55
Identity = 148/289 (51.21%), Postives = 179/289 (61.94%), Query Frame = 0 
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKPTAAGRTGFPSSSSTSPSSSSHSNSGTSSSPTTQSAASPVSRATPPTGGSSSSSRHLPTP-PDSDPFGLFHEAPTAPT-------GGGGVQRNVSAPMSNNGHS-------PSMSMQRPQGGGGG-------GGGGKADLLDFDAFGSHPPAAPQKRPMSGTPP-----PPHHHHQQQQPPPRGYPPSSSG-GGWM 262
            MIRYYIPGDGDDA+HPNIFHLPPS + PP LRDVRQ+FPLPG YHFRFK RL+GTPD K VW D+TED AE+P  DG  +AKVSR+ M++ +KPTAAG TG  SSSS+SP+S+ +S +  ++ P + + A+P +  + P  G    ++ L +P  D+DPFGLFHEAP + +           V  N SAP +    S       P  S   PQ   GG         GGK DLLDFDAFGS PP AP   PM G PP     PP    QQ Q    GYP SS+  GGWM
Sbjct:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLRDVRQHFPLPGGYHFRFKTRLDGTPDKKAVWMDVTEDAAELPTFDGFYIAKVSRMRMEMPSKPTAAGSTGMSSSSSSSPTSAGYSRTSQATGPVSATRATPSASQSLPLRG----NKGLVSPASDNDPFGLFHEAPPSSSTSSSFSKAPASVSGNSSAPHATTSSSHPAARGHPPHSTPGPQEMSGGSKVVAGTAAGGKGDLLDFDAFGSQPP-APSVPPMRGVPPMRGVSPP----QQPQQRQTGYPSSSNATGGWM 280
The following BLAST results are available for this feature:
BLAST of NO13G01080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21779.11.300e-5551.21DIX domain containing protein [Nannochloropsis gad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01080NO13G01080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01080.1NO13G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01080.1.cds1NO13G01080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01080.1 ID=NO13G01080.1|Name=NO13G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=786bp
ATGATCCGGTACTACATCCCGGGCGACGGGGACGACGCGACCCACCCCAA
CATCTTCCATCTACCACCTTCTGCCCGCAACCCCCCCACGCTCCGCGATG
TCCGCCAGAACTTCCCTCTACCGGGCGCGTACCATTTCCGATTCAAGAAG
CGTTTGGAGGGCACCCCAGATAACAAACCCGTTTGGTTTGACATTACGGA
AGACACCGCGGAGATCCCTGTGTGTGATGGCACCATCCTCGCCAAAGTCT
CGAGATTGAGTATGGATGTTTCAGCTAAGCCTACCGCCGCGGGGAGAACA
GGCTTCCCCTCTTCTTCCTCCACTTCCCCATCGTCTTCCTCACATTCCAA
CTCTGGGACCTCCTCCTCACCAACCACGCAATCTGCCGCGTCGCCTGTCT
CGAGGGCCACACCGCCTACAGGCGGCAGCAGTAGCAGCAGCCGACACTTG
CCGACCCCTCCCGACAGTGACCCCTTCGGTTTGTTTCACGAAGCTCCCAC
GGCACCGACGGGTGGTGGTGGAGTCCAGCGAAACGTCAGTGCGCCCATGA
GCAACAACGGCCACTCCCCGTCAATGTCCATGCAAAGACCGCAAGGCGGG
GGAGGAGGAGGAGGAGGAGGGAAAGCAGACTTACTCGATTTCGATGCTTT
TGGGAGTCATCCCCCTGCTGCTCCTCAAAAGCGGCCCATGTCTGGGACTC
CTCCTCCTCCTCATCATCATCATCAGCAGCAGCAGCCGCCGCCAAGGGGC
TACCCGCCTTCGTCGTCGGGGGGTGGGTGGATGTGA
back to top

protein sequence of NO13G01080.1

>NO13G01080.1-protein ID=NO13G01080.1-protein|Name=NO13G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKK
RLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKPTAAGRT
GFPSSSSTSPSSSSHSNSGTSSSPTTQSAASPVSRATPPTGGSSSSSRHL
PTPPDSDPFGLFHEAPTAPTGGGGVQRNVSAPMSNNGHSPSMSMQRPQGG
GGGGGGGKADLLDFDAFGSHPPAAPQKRPMSGTPPPPHHHHQQQQPPPRG
YPPSSSGGGWM*
back to top

mRNA from alignment at chr13:342091..342876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01080.1 ID=NO13G01080.1|Name=NO13G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=786bp|location=Sequence derived from alignment at chr13:342091..342876+ (Nannochloropsis oceanica)
ATGATCCGGTACTACATCCCGGGCGACGGGGACGACGCGACCCACCCCAA
CATCTTCCATCTACCACCTTCTGCCCGCAACCCCCCCACGCTCCGCGATG
TCCGCCAGAACTTCCCTCTACCGGGCGCGTACCATTTCCGATTCAAGAAG
CGTTTGGAGGGCACCCCAGATAACAAACCCGTTTGGTTTGACATTACGGA
AGACACCGCGGAGATCCCTGTGTGTGATGGCACCATCCTCGCCAAAGTCT
CGAGATTGAGTATGGATGTTTCAGCTAAGCCTACCGCCGCGGGGAGAACA
GGCTTCCCCTCTTCTTCCTCCACTTCCCCATCGTCTTCCTCACATTCCAA
CTCTGGGACCTCCTCCTCACCAACCACGCAATCTGCCGCGTCGCCTGTCT
CGAGGGCCACACCGCCTACAGGCGGCAGCAGTAGCAGCAGCCGACACTTG
CCGACCCCTCCCGACAGTGACCCCTTCGGTTTGTTTCACGAAGCTCCCAC
GGCACCGACGGGTGGTGGTGGAGTCCAGCGAAACGTCAGTGCGCCCATGA
GCAACAACGGCCACTCCCCGTCAATGTCCATGCAAAGACCGCAAGGCGGG
GGAGGAGGAGGAGGAGGAGGGAAAGCAGACTTACTCGATTTCGATGCTTT
TGGGAGTCATCCCCCTGCTGCTCCTCAAAAGCGGCCCATGTCTGGGACTC
CTCCTCCTCCTCATCATCATCATCAGCAGCAGCAGCCGCCGCCAAGGGGC
TACCCGCCTTCGTCGTCGGGGGGTGGGTGGATGTGA
back to top

Coding sequence (CDS) from alignment at chr13:342091..342876+

>NO13G01080.1 ID=NO13G01080.1|Name=NO13G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr13:342091..342876+ (Nannochloropsis oceanica)
ATGATCCGGTACTACATCCCGGGCGACGGGGACGACGCGACCCACCCCAA
CATCTTCCATCTACCACCTTCTGCCCGCAACCCCCCCACGCTCCGCGATG
TCCGCCAGAACTTCCCTCTACCGGGCGCGTACCATTTCCGATTCAAGAAG
CGTTTGGAGGGCACCCCAGATAACAAACCCGTTTGGTTTGACATTACGGA
AGACACCGCGGAGATCCCTGTGTGTGATGGCACCATCCTCGCCAAAGTCT
CGAGATTGAGTATGGATGTTTCAGCTAAGCCTACCGCCGCGGGGAGAACA
GGCTTCCCCTCTTCTTCCTCCACTTCCCCATCGTCTTCCTCACATTCCAA
CTCTGGGACCTCCTCCTCACCAACCACGCAATCTGCCGCGTCGCCTGTCT
CGAGGGCCACACCGCCTACAGGCGGCAGCAGTAGCAGCAGCCGACACTTG
CCGACCCCTCCCGACAGTGACCCCTTCGGTTTGTTTCACGAAGCTCCCAC
GGCACCGACGGGTGGTGGTGGAGTCCAGCGAAACGTCAGTGCGCCCATGA
GCAACAACGGCCACTCCCCGTCAATGTCCATGCAAAGACCGCAAGGCGGG
GGAGGAGGAGGAGGAGGAGGGAAAGCAGACTTACTCGATTTCGATGCTTT
TGGGAGTCATCCCCCTGCTGCTCCTCAAAAGCGGCCCATGTCTGGGACTC
CTCCTCCTCCTCATCATCATCATCAGCAGCAGCAGCCGCCGCCAAGGGGC
TACCCGCCTTCGTCGTCGGGGGGTGGGTGGATGTGA
back to top
Synonyms
Publications