NO13G01040, NO13G01040 (gene) Nannochloropsis oceanica

Overview
NameNO13G01040
Unique NameNO13G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2101
Alignment locationchr13:332526..334626 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:332526..334626 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO13G01040 vs. NCBI_GenBank
Match: EWM21778.1 (hypothetical protein Naga_100188g8 [Nannochloropsis gaditana])

HSP 1 Score: 295.4 bits (755), Expect = 3.000e-76
Identity = 187/433 (43.19%), Postives = 243/433 (56.12%), Query Frame = 0 
Query:   47 TRLRQQSSTPPLP-TYTVTLAPCTPLPVLSNCSAVPQTFHDNVEACAHISFSA--FGQKATMAHLSFVLVEEEGE----HGLAALPELQVVHEDGG------KKRTEGQSSGDSGDHNGKRRTLEGVSLIRSGSQKGEVPDVKG--IESDTNESNYVDLDKDSGSKSSGATLTMVLLVGSVLYFPSQAEMYEFMQPKVAAAMREKGLYDPTYEGPCTSSGNNDXXXXXTSRSSNANPAVNELGEGNNVLTSVTRRQRRLQRYKGDNT------------DGNGISSCADVVQAFNSEGGGDEATYAHLYTCNITASTPDGPSPVMHRLSFDGLQPEDFPYTYWVFLNINPASLTTSPSSSSLSFSSFSANQTIRYEAAFSPPFIPSSSKVVEPLFAILLLVAALYFVLFSRYISNPTLDWLSTTRWGKRCLRG 453
            T LR  S++PPLP T T+TL PC PLPVLSNCSAVP     N+ +C HISF +  FGQ A  AHLSFV   EE E    H L+  P   +   + G      + RTE +   D     G  R   G  +     Q GE    K   + +    +        S       +LTMVLLVGS+ YFP+QA MYEFMQPKV AAMREKG YDP  +GPC  S ++       + SS++      +    ++L  +T   R+LQ+ +G               +   + +CA+VV  FN + GGDE++YA LYTCNIT+S P G  P +H LS +GL P+ FPYTYWVFLN++P +     +      +     QTIRYEA F+PP+ P  + +  PLF IL+L+  LYF+L SRY+S+P LDWLSTTRWGKR LRG
Sbjct:   39 TTLRHFSASPPLPATQTITLTPCMPLPVLSNCSAVPMAVQGNLNSCIHISFQSGGFGQNARTAHLSFVFAGEEEEEGHLHDLSHTPTSDLKPAETGELADAKELRTEQEGYLDIVPAAGATRAARGDGIDFLSPQDGEKIHAKSEKLPASIRRAEKRMTGMKSNLSGGNPSLTMVLLVGSIFYFPTQAAMYEFMQPKVVAAMREKGFYDPLEDGPCRPSEDDRDDADANNGSSHS------IAGRRDILKDLTSVDRKLQKVRGARQPLPQTRPEVLQGESESLLNCANVVDVFNHQ-GGDESSYARLYTCNITSSDPGGTIPAVHHLSVEGLLPDLFPYTYWVFLNMDPLNPDEPQAPPPPLRALPKGYQTIRYEATFAPPYAPPPAALGGPLFWILVLITVLYFILSSRYVSSPILDWLSTTRWGKRQLRG 464
The following BLAST results are available for this feature:
BLAST of NO13G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21778.13.000e-7643.19hypothetical protein Naga_100188g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001789NSK001789Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01040.1NO13G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596731gene_6904Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100188g8gene8656Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01040.1NO13G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01040 ID=NO13G01040|Name=NO13G01040|organism=Nannochloropsis oceanica|type=gene|length=2101bp
TAGAGAAAATGGACACAAGTCGACAAAGAAGACCATGGCATAGAAGCACC
GTCCATCTGACTGTGCTCGCGGTGGCAGCCACACTCCTCCCCACCCAGAC
CACTGCTGCCGGCCCATCACCACCCTCCTTCGCAAAACACCTCTCCACAC
GACTCCGCCAACAATCATCAACCCCACCATTGCCCACTTACACCGTCACA
TTGGCCCCATGCACACCTTTGCCTGTCCTGAGCAATTGCAGTGCGGTGCC
TCAGACCTTCCATGATAACGTCGAGGCCTGCGCCCACATTTCATTTTCCG
CCTTCGGCCAGAAAGCCACGATGGCGCACCTCAGTTTTGTGTTGGTGGAA
GAGGAGGGTGAACATGGACTTGCTGCATTGCCTGAATTACAAGTCGTGCA
TGAGGATGGTGGGAAGAAGCGGACAGAGGGGCAGAGTAGTGGTGACAGCG
GCGACCACAACGGCAAGAGGAGGACGTTGGAGGGTGTATCTTTAATCCGT
TCCGGCTCCCAGAAGGGGGAAGTCCCAGACGTAAAGGGCATCGAGAGCGA
TACAAATGAAAGCAATTATGTTGACCTCGACAAGGATTCGGGCAGCAAAA
GCAGTGGAGCGACATTGACGATGGTGTTGTTGGTCGGCTCAGTGCTTTAT
TTTCCGTCACAAGCGGAGATGTACGAATTCATGCAGgttcgcaaataatg
gacagatggagggagggagggagtacagaaaatttgataaactcaccacg
ttgtttgtcgatgagtgatcaatgaggactgtgtgttttagacgagcagt
gcattcccattcctctattttgatacattccctcttgcgctcggtgtcct
aacgtccatcatcttttgcacgcacccacacagCCCAAGGTGGCCGCCGC
TATGCGTGAAAAGGGTCTTTATGACCCTACGTATGAAGGTCCTTGTACCT
CCAGCGGTAACAATGACGACAACAACAAGAACACCAGCAGGAGTAGCAAT
GCTAATCCTGCAGTGAATGAGCTAGGGGAGGGGAACAACGTCCTCACCTC
CGTTACACGACGGCAACGGCGGCTCCAACGATATAAGGGCGACAATACCG
ACGGGAATGGCATATCTAGTTGTGCTGATGTCGTCCAAGCCTTCAACAGC
GAGGGAGGTGGAGACGAGGCGACCTACGCCCACCTCTACACCTGCAACAT
CACGGCCAGCACGCCCGATGGCCCCTCACCCGTCATGCACCGCTTATCAT
TCGATGGGCTCCAGCCCGAGGATTTCCCATACACGTATTGGGTGTTTCTC
AATATCAATCCTGCCTCCCTCACGACCTCGCCCTCCTCCTCCTCCTTGTC
CTTTTCCTCGTTTTCTGCTAACCAGACCATTAGATACGAGGCTGCCTTTT
CTCCTCCATTTATCCCCAGCAGCAGCAAGGTGGTCGAGCCGTTGTTCGCC
ATCCTTCTGCTGGTGGCTGCCTTGTATTTCGTGCTCTTCAGCCGATACAT
CTCAAATCCGACCTTGGATTGGTTGAGCACCACCAGATGGGGTAAGCGCT
GTTTGAGAGGAGGGGTGAGTTAAGACAGGGAGATGAAGAGGAGCAGGAGT
AGAAGGGAGAAGGAATGGGGAAAGAAAGGGTGGACCTGGTTTAAAAAAAT
ATGGACGGTGGAGGAGGAGAAGGAGCAAGGTAAGTGAAATTTCTAGGAAG
AGTATGCCTCGCTGGGTGTTGGTGGGTACAGCGACCAAAATGATGAGGGA
GAAAAAATTAAATTACGAAAATTTATGCATGCATGCTGTGTGGCTTTAAG
TCTGCGGCCTGTGCTATGAGTGAACGGCCAATGCGCGAGCATGTCTTAAA
ATTGTAGGAGGGAGGAAGGGAGGGAGGGAAGGAGGGAGGGAGGGTGGGAG
GGAGGGAGGGAGAGGTTATATGTATGGGATGTTCCCTGGCTCGAGAGGAC
CGGGCAGGCATTCCTGTGCGATTTTTATGCCTAATTTCAATCAGTCACTC
AGTGACAGTACCATTCGTGTTGACTTTCTGATTCATTCATTCGTCTATTT
ATCTGCCTGCTAAAAAGCTAGTAAAGAACAAAGGAAACTAAGCAGCAATT
G
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protein sequence of NO13G01040.1

>NO13G01040.1-protein ID=NO13G01040.1-protein|Name=NO13G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MDTSRQRRPWHRSTVHLTVLAVAATLLPTQTTAAGPSPPSFAKHLSTRLR
QQSSTPPLPTYTVTLAPCTPLPVLSNCSAVPQTFHDNVEACAHISFSAFG
QKATMAHLSFVLVEEEGEHGLAALPELQVVHEDGGKKRTEGQSSGDSGDH
NGKRRTLEGVSLIRSGSQKGEVPDVKGIESDTNESNYVDLDKDSGSKSSG
ATLTMVLLVGSVLYFPSQAEMYEFMQPKVAAAMREKGLYDPTYEGPCTSS
GNNDDNNKNTSRSSNANPAVNELGEGNNVLTSVTRRQRRLQRYKGDNTDG
NGISSCADVVQAFNSEGGGDEATYAHLYTCNITASTPDGPSPVMHRLSFD
GLQPEDFPYTYWVFLNINPASLTTSPSSSSLSFSSFSANQTIRYEAAFSP
PFIPSSSKVVEPLFAILLLVAALYFVLFSRYISNPTLDWLSTTRWGKRCL
RGGVS*
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Synonyms
Publications