NO13G01040.1, NO13G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01040.1
Unique NameNO13G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1904
Alignment locationchr13:332526..334626 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:332526..334626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01040.1 vs.
Match: EWM21778.1 (hypothetical protein Naga_100188g8 [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 6.600e-76
Identity = 188/433 (43.42%), Postives = 245/433 (56.58%), Query Frame = 0 
Query:   47 TRLRQQSSTPPLP-TYTVTLAPCTPLPVLSNCSAVPQTFHDNVEACAHISFSA--FGQKATMAHLSFVLVEEEGE----HGLAALPELQVVHEDGGKK------RTEGQSSGDSGDHNGKRRTLEGVSLIRSGSQKGEVPDVKG--IESDTNESNYVDLDKDSGSKSSGATLTMVLLVGSVLYFPSQAEMYEFMQPKVAAAMREKGLYDPTYEGPCTSSGNNDDNNKNTSRSSNANPAVNELGEGNNVLTSVTRRQRRLQRYKGDNT------------DGNGISSCADVVQAFNSEGGGDEATYAHLYTCNITASTPDGPSPVMHRLSFDGLQPEDFPYTYWVFLNINPASLTTSPSSSSLSFSSFSANQTIRYEAAFSPPFIPSSSKVVEPLFAILLLVAALYFVLFSRYISNPTLDWLSTTRWGKRCLRG 453
            T LR  S++PPLP T T+TL PC PLPVLSNCSAVP     N+ +C HISF +  FGQ A  AHLSFV   EE E    H L+  P   +   + G+       RTE +   D     G  R   G  +     Q GE    K   + +    +        S       +LTMVLLVGS+ YFP+QA MYEFMQPKV AAMREKG YDP  +GPC  S ++ D+    + SS++      +    ++L  +T   R+LQ+ +G               +   + +CA+VV  FN +GG DE++YA LYTCNIT+S P G  P +H LS +GL P+ FPYTYWVFLN++P +     +      +     QTIRYEA F+PP+ P  + +  PLF IL+L+  LYF+L SRY+S+P LDWLSTTRWGKR LRG
Sbjct:   39 TTLRHFSASPPLPATQTITLTPCMPLPVLSNCSAVPMAVQGNLNSCIHISFQSGGFGQNARTAHLSFVFAGEEEEEGHLHDLSHTPTSDLKPAETGELADAKELRTEQEGYLDIVPAAGATRAARGDGIDFLSPQDGEKIHAKSEKLPASIRRAEKRMTGMKSNLSGGNPSLTMVLLVGSIFYFPTQAAMYEFMQPKVVAAMREKGFYDPLEDGPCRPSEDDRDDADANNGSSHS------IAGRRDILKDLTSVDRKLQKVRGARQPLPQTRPEVLQGESESLLNCANVVDVFNHQGG-DESSYARLYTCNITSSDPGGTIPAVHHLSVEGLLPDLFPYTYWVFLNMDPLNPDEPQAPPPPLRALPKGYQTIRYEATFAPPYAPPPAALGGPLFWILVLITVLYFILSSRYVSSPILDWLSTTRWGKRQLRG 464
The following BLAST results are available for this feature:
BLAST of NO13G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21778.16.600e-7643.42hypothetical protein Naga_100188g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01040NO13G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01040.1NO13G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01040.1.cds1NO13G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01040.1.cds2NO13G01040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01040.1 ID=NO13G01040.1|Name=NO13G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp
TAGAGAAAATGGACACAAGTCGACAAAGAAGACCATGGCATAGAAGCACC
GTCCATCTGACTGTGCTCGCGGTGGCAGCCACACTCCTCCCCACCCAGAC
CACTGCTGCCGGCCCATCACCACCCTCCTTCGCAAAACACCTCTCCACAC
GACTCCGCCAACAATCATCAACCCCACCATTGCCCACTTACACCGTCACA
TTGGCCCCATGCACACCTTTGCCTGTCCTGAGCAATTGCAGTGCGGTGCC
TCAGACCTTCCATGATAACGTCGAGGCCTGCGCCCACATTTCATTTTCCG
CCTTCGGCCAGAAAGCCACGATGGCGCACCTCAGTTTTGTGTTGGTGGAA
GAGGAGGGTGAACATGGACTTGCTGCATTGCCTGAATTACAAGTCGTGCA
TGAGGATGGTGGGAAGAAGCGGACAGAGGGGCAGAGTAGTGGTGACAGCG
GCGACCACAACGGCAAGAGGAGGACGTTGGAGGGTGTATCTTTAATCCGT
TCCGGCTCCCAGAAGGGGGAAGTCCCAGACGTAAAGGGCATCGAGAGCGA
TACAAATGAAAGCAATTATGTTGACCTCGACAAGGATTCGGGCAGCAAAA
GCAGTGGAGCGACATTGACGATGGTGTTGTTGGTCGGCTCAGTGCTTTAT
TTTCCGTCACAAGCGGAGATGTACGAATTCATGCAGCCCAAGGTGGCCGC
CGCTATGCGTGAAAAGGGTCTTTATGACCCTACGTATGAAGGTCCTTGTA
CCTCCAGCGGTAACAATGACGACAACAACAAGAACACCAGCAGGAGTAGC
AATGCTAATCCTGCAGTGAATGAGCTAGGGGAGGGGAACAACGTCCTCAC
CTCCGTTACACGACGGCAACGGCGGCTCCAACGATATAAGGGCGACAATA
CCGACGGGAATGGCATATCTAGTTGTGCTGATGTCGTCCAAGCCTTCAAC
AGCGAGGGAGGTGGAGACGAGGCGACCTACGCCCACCTCTACACCTGCAA
CATCACGGCCAGCACGCCCGATGGCCCCTCACCCGTCATGCACCGCTTAT
CATTCGATGGGCTCCAGCCCGAGGATTTCCCATACACGTATTGGGTGTTT
CTCAATATCAATCCTGCCTCCCTCACGACCTCGCCCTCCTCCTCCTCCTT
GTCCTTTTCCTCGTTTTCTGCTAACCAGACCATTAGATACGAGGCTGCCT
TTTCTCCTCCATTTATCCCCAGCAGCAGCAAGGTGGTCGAGCCGTTGTTC
GCCATCCTTCTGCTGGTGGCTGCCTTGTATTTCGTGCTCTTCAGCCGATA
CATCTCAAATCCGACCTTGGATTGGTTGAGCACCACCAGATGGGGTAAGC
GCTGTTTGAGAGGAGGGGTGAGTTAAGACAGGGAGATGAAGAGGAGCAGG
AGTAGAAGGGAGAAGGAATGGGGAAAGAAAGGGTGGACCTGGTTTAAAAA
AATATGGACGGTGGAGGAGGAGAAGGAGCAAGGTAAGTGAAATTTCTAGG
AAGAGTATGCCTCGCTGGGTGTTGGTGGGTACAGCGACCAAAATGATGAG
GGAGAAAAAATTAAATTACGAAAATTTATGCATGCATGCTGTGTGGCTTT
AAGTCTGCGGCCTGTGCTATGAGTGAACGGCCAATGCGCGAGCATGTCTT
AAAATTGTAGGAGGGAGGAAGGGAGGGAGGGAAGGAGGGAGGGAGGGTGG
GAGGGAGGGAGGGAGAGGTTATATGTATGGGATGTTCCCTGGCTCGAGAG
GACCGGGCAGGCATTCCTGTGCGATTTTTATGCCTAATTTCAATCAGTCA
CTCAGTGACAGTACCATTCGTGTTGACTTTCTGATTCATTCATTCGTCTA
TTTATCTGCCTGCTAAAAAGCTAGTAAAGAACAAAGGAAACTAAGCAGCA
ATTG
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protein sequence of NO13G01040.1

>NO13G01040.1-protein ID=NO13G01040.1-protein|Name=NO13G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MDTSRQRRPWHRSTVHLTVLAVAATLLPTQTTAAGPSPPSFAKHLSTRLR
QQSSTPPLPTYTVTLAPCTPLPVLSNCSAVPQTFHDNVEACAHISFSAFG
QKATMAHLSFVLVEEEGEHGLAALPELQVVHEDGGKKRTEGQSSGDSGDH
NGKRRTLEGVSLIRSGSQKGEVPDVKGIESDTNESNYVDLDKDSGSKSSG
ATLTMVLLVGSVLYFPSQAEMYEFMQPKVAAAMREKGLYDPTYEGPCTSS
GNNDDNNKNTSRSSNANPAVNELGEGNNVLTSVTRRQRRLQRYKGDNTDG
NGISSCADVVQAFNSEGGGDEATYAHLYTCNITASTPDGPSPVMHRLSFD
GLQPEDFPYTYWVFLNINPASLTTSPSSSSLSFSSFSANQTIRYEAAFSP
PFIPSSSKVVEPLFAILLLVAALYFVLFSRYISNPTLDWLSTTRWGKRCL
RGGVS*
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mRNA from alignment at chr13:332526..334626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01040.1 ID=NO13G01040.1|Name=NO13G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2101bp|location=Sequence derived from alignment at chr13:332526..334626+ (Nannochloropsis oceanica)
TAGAGAAAATGGACACAAGTCGACAAAGAAGACCATGGCATAGAAGCACC
GTCCATCTGACTGTGCTCGCGGTGGCAGCCACACTCCTCCCCACCCAGAC
CACTGCTGCCGGCCCATCACCACCCTCCTTCGCAAAACACCTCTCCACAC
GACTCCGCCAACAATCATCAACCCCACCATTGCCCACTTACACCGTCACA
TTGGCCCCATGCACACCTTTGCCTGTCCTGAGCAATTGCAGTGCGGTGCC
TCAGACCTTCCATGATAACGTCGAGGCCTGCGCCCACATTTCATTTTCCG
CCTTCGGCCAGAAAGCCACGATGGCGCACCTCAGTTTTGTGTTGGTGGAA
GAGGAGGGTGAACATGGACTTGCTGCATTGCCTGAATTACAAGTCGTGCA
TGAGGATGGTGGGAAGAAGCGGACAGAGGGGCAGAGTAGTGGTGACAGCG
GCGACCACAACGGCAAGAGGAGGACGTTGGAGGGTGTATCTTTAATCCGT
TCCGGCTCCCAGAAGGGGGAAGTCCCAGACGTAAAGGGCATCGAGAGCGA
TACAAATGAAAGCAATTATGTTGACCTCGACAAGGATTCGGGCAGCAAAA
GCAGTGGAGCGACATTGACGATGGTGTTGTTGGTCGGCTCAGTGCTTTAT
TTTCCGTCACAAGCGGAGATGTACGAATTCATGCAGGTTCGCAAATAATG
GACAGATGGAGGGAGGGAGGGAGTACAGAAAATTTGATAAACTCACCACG
TTGTTTGTCGATGAGTGATCAATGAGGACTGTGTGTTTTAGACGAGCAGT
GCATTCCCATTCCTCTATTTTGATACATTCCCTCTTGCGCTCGGTGTCCT
AACGTCCATCATCTTTTGCACGCACCCACACAGCCCAAGGTGGCCGCCGC
TATGCGTGAAAAGGGTCTTTATGACCCTACGTATGAAGGTCCTTGTACCT
CCAGCGGTAACAATGACGACAACAACAAGAACACCAGCAGGAGTAGCAAT
GCTAATCCTGCAGTGAATGAGCTAGGGGAGGGGAACAACGTCCTCACCTC
CGTTACACGACGGCAACGGCGGCTCCAACGATATAAGGGCGACAATACCG
ACGGGAATGGCATATCTAGTTGTGCTGATGTCGTCCAAGCCTTCAACAGC
GAGGGAGGTGGAGACGAGGCGACCTACGCCCACCTCTACACCTGCAACAT
CACGGCCAGCACGCCCGATGGCCCCTCACCCGTCATGCACCGCTTATCAT
TCGATGGGCTCCAGCCCGAGGATTTCCCATACACGTATTGGGTGTTTCTC
AATATCAATCCTGCCTCCCTCACGACCTCGCCCTCCTCCTCCTCCTTGTC
CTTTTCCTCGTTTTCTGCTAACCAGACCATTAGATACGAGGCTGCCTTTT
CTCCTCCATTTATCCCCAGCAGCAGCAAGGTGGTCGAGCCGTTGTTCGCC
ATCCTTCTGCTGGTGGCTGCCTTGTATTTCGTGCTCTTCAGCCGATACAT
CTCAAATCCGACCTTGGATTGGTTGAGCACCACCAGATGGGGTAAGCGCT
GTTTGAGAGGAGGGGTGAGTTAAGACAGGGAGATGAAGAGGAGCAGGAGT
AGAAGGGAGAAGGAATGGGGAAAGAAAGGGTGGACCTGGTTTAAAAAAAT
ATGGACGGTGGAGGAGGAGAAGGAGCAAGGTAAGTGAAATTTCTAGGAAG
AGTATGCCTCGCTGGGTGTTGGTGGGTACAGCGACCAAAATGATGAGGGA
GAAAAAATTAAATTACGAAAATTTATGCATGCATGCTGTGTGGCTTTAAG
TCTGCGGCCTGTGCTATGAGTGAACGGCCAATGCGCGAGCATGTCTTAAA
ATTGTAGGAGGGAGGAAGGGAGGGAGGGAAGGAGGGAGGGAGGGTGGGAG
GGAGGGAGGGAGAGGTTATATGTATGGGATGTTCCCTGGCTCGAGAGGAC
CGGGCAGGCATTCCTGTGCGATTTTTATGCCTAATTTCAATCAGTCACTC
AGTGACAGTACCATTCGTGTTGACTTTCTGATTCATTCATTCGTCTATTT
ATCTGCCTGCTAAAAAGCTAGTAAAGAACAAAGGAAACTAAGCAGCAATT
G
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Coding sequence (CDS) from alignment at chr13:332526..334626+

>NO13G01040.1 ID=NO13G01040.1|Name=NO13G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr13:332526..334626+ (Nannochloropsis oceanica)
ATGGACACAAGTCGACAAAGAAGACCATGGCATAGAAGCACCGTCCATCT
GACTGTGCTCGCGGTGGCAGCCACACTCCTCCCCACCCAGACCACTGCTG
CCGGCCCATCACCACCCTCCTTCGCAAAACACCTCTCCACACGACTCCGC
CAACAATCATCAACCCCACCATTGCCCACTTACACCGTCACATTGGCCCC
ATGCACACCTTTGCCTGTCCTGAGCAATTGCAGTGCGGTGCCTCAGACCT
TCCATGATAACGTCGAGGCCTGCGCCCACATTTCATTTTCCGCCTTCGGC
CAGAAAGCCACGATGGCGCACCTCAGTTTTGTGTTGGTGGAAGAGGAGGG
TGAACATGGACTTGCTGCATTGCCTGAATTACAAGTCGTGCATGAGGATG
GTGGGAAGAAGCGGACAGAGGGGCAGAGTAGTGGTGACAGCGGCGACCAC
AACGGCAAGAGGAGGACGTTGGAGGGTGTATCTTTAATCCGTTCCGGCTC
CCAGAAGGGGGAAGTCCCAGACGTAAAGGGCATCGAGAGCGATACAAATG
AAAGCAATTATGTTGACCTCGACAAGGATTCGGGCAGCAAAAGCAGTGGA
GCGACATTGACGATGGTGTTGTTGGTCGGCTCAGTGCTTTATTTTCCGTC
ACAAGCGGAGATGTACGAATTCATGCAGCCCAAGGTGGCCGCCGCTATGC
GTGAAAAGGGTCTTTATGACCCTACGTATGAAGGTCCTTGTACCTCCAGC
GGTAACAATGACGACAACAACAAGAACACCAGCAGGAGTAGCAATGCTAA
TCCTGCAGTGAATGAGCTAGGGGAGGGGAACAACGTCCTCACCTCCGTTA
CACGACGGCAACGGCGGCTCCAACGATATAAGGGCGACAATACCGACGGG
AATGGCATATCTAGTTGTGCTGATGTCGTCCAAGCCTTCAACAGCGAGGG
AGGTGGAGACGAGGCGACCTACGCCCACCTCTACACCTGCAACATCACGG
CCAGCACGCCCGATGGCCCCTCACCCGTCATGCACCGCTTATCATTCGAT
GGGCTCCAGCCCGAGGATTTCCCATACACGTATTGGGTGTTTCTCAATAT
CAATCCTGCCTCCCTCACGACCTCGCCCTCCTCCTCCTCCTTGTCCTTTT
CCTCGTTTTCTGCTAACCAGACCATTAGATACGAGGCTGCCTTTTCTCCT
CCATTTATCCCCAGCAGCAGCAAGGTGGTCGAGCCGTTGTTCGCCATCCT
TCTGCTGGTGGCTGCCTTGTATTTCGTGCTCTTCAGCCGATACATCTCAA
ATCCGACCTTGGATTGGTTGAGCACCACCAGATGGGGTAAGCGCTGTTTG
AGAGGAGGGGTGAGTTAA
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Synonyms
Publications