NO13G01010, NO13G01010 (gene) Nannochloropsis oceanica

Overview
NameNO13G01010
Unique NameNO13G01010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length450
Alignment locationchr13:325401..325850 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:325401..325850 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G01010 vs. NCBI_GenBank
Match: EWM21780.1 (hypothetical protein Naga_100188g11 [Nannochloropsis gaditana])

HSP 1 Score: 175.6 bits (444), Expect = 1.100e-40
Identity = 84/125 (67.20%), Postives = 96/125 (76.80%), Query Frame = 0 
Query:    6 TRYLAVTAALLVGLLIGLVDAFLPLGIRNSLHRASRAQSPTTAPPSSTSTTFLSAAAQVDPPLHLKARPDWLPKIPEGCDSDYECEGTESCCDFIFFKMCCSDGGHTQEAWTPVPIPVRPGDGYQ 131
            TR       +   +L+GLV+AFLP G++ +LHR +   + +T P   T    L+AA  VDPP  L+ARPDWLPKIPEGCDSDYECEGTESCCDFIFFKMCCSDGGHTQEAWTPVPIPVRPGDGYQ
Sbjct:    5 TRTHVFVGVIACCVLVGLVEAFLPAGVKQALHRRAGRVTLSTRPSKPT----LAAAKLVDPPPPLQARPDWLPKIPEGCDSDYECEGTESCCDFIFFKMCCSDGGHTQEAWTPVPIPVRPGDGYQ 125
The following BLAST results are available for this feature:
BLAST of NO13G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21780.11.100e-4067.20hypothetical protein Naga_100188g11 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001791NSK001791Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01010.1NO13G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596741gene_6906Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100188g11gene8659Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01010.1NO13G01010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01010 ID=NO13G01010|Name=NO13G01010|organism=Nannochloropsis oceanica|type=gene|length=450bp
ATGGCGATTCAATCAACACGTTATCTGGCCGTGACAGCCGCCCTCCTAGT
GGGCTTGCTGATCGGCCTAGTCGACGCCTTCTTGCCCTTGGGCATTCGTA
ACTCGTTGCACCGTGCGTCCCGAGCCCAGTCCCCCACCACGGCCCCACCG
TCATCAACAAGCACCACCTTCCTCTCTGCCGCCGCGCAAGTTGACCCTCC
CCTGCACCTCAAAGCACGCCCTGACTGGTTGCCCAAGATCCCTGAAGGTT
GTGACTCAGATTACGAGTGCGAAGGGACGGAGAGCTGCTGCGACTTCATC
TTCTTCAAGATGTGCTGCTCGGATGGGGGACACACCCAAGAGGCTTGGAC
ACCCGTGCCCATCCCTGTACGACCAGGTGATGGATACCAACAAGGTGGAG
GGTATGCAGGGAATGGAGGGTTCTCGGGCAGTGGGGGCCTGTACCGATAG
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protein sequence of NO13G01010.1

>NO13G01010.1-protein ID=NO13G01010.1-protein|Name=NO13G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MAIQSTRYLAVTAALLVGLLIGLVDAFLPLGIRNSLHRASRAQSPTTAPP
SSTSTTFLSAAAQVDPPLHLKARPDWLPKIPEGCDSDYECEGTESCCDFI
FFKMCCSDGGHTQEAWTPVPIPVRPGDGYQQGGGYAGNGGFSGSGGLYR*
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Synonyms
Publications