NO13G01010.1, NO13G01010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01010.1
Unique NameNO13G01010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length450
Alignment locationchr13:325401..325850 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:325401..325850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G01010.1 vs.
Match: EWM21780.1 (hypothetical protein Naga_100188g11 [Nannochloropsis gaditana])

HSP 1 Score: 205.3 bits (521), Expect = 1.300e-49
Identity = 99/144 (68.75%), Postives = 113/144 (78.47%), Query Frame = 0
Query:    6 TRYLAVTAALLVGLLIGLVDAFLPLGIRNSLHRASRAQSPTTAPPSSTSTTFLSAAAQVDPPLHLKARPDWLPKIPEGCDSDYECEGTESCCDFIFFKMCCSDGGHTQEAWTPVPIPVRPGDGYQQGGGYAGNGGFSGSGGLYR 150
            TR       +   +L+GLV+AFLP G++ +LHR +   + +T P   T    L+AA  VDPP  L+ARPDWLPKIPEGCDSDYECEGTESCCDFIFFKMCCSDGGHTQEAWTPVPIPVRPGDGYQQGGG+ GNGG+SG GGLYR
Sbjct:    5 TRTHVFVGVIACCVLVGLVEAFLPAGVKQALHRRAGRVTLSTRPSKPT----LAAAKLVDPPPPLQARPDWLPKIPEGCDSDYECEGTESCCDFIFFKMCCSDGGHTQEAWTPVPIPVRPGDGYQQGGGFGGNGGYSGGGGLYR 144          
The following BLAST results are available for this feature:
BLAST of NO13G01010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21780.11.300e-4968.75hypothetical protein Naga_100188g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01010NO13G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01010.1NO13G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01010.1.cds1NO13G01010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01010.1 ID=NO13G01010.1|Name=NO13G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=450bp
ATGGCGATTCAATCAACACGTTATCTGGCCGTGACAGCCGCCCTCCTAGT
GGGCTTGCTGATCGGCCTAGTCGACGCCTTCTTGCCCTTGGGCATTCGTA
ACTCGTTGCACCGTGCGTCCCGAGCCCAGTCCCCCACCACGGCCCCACCG
TCATCAACAAGCACCACCTTCCTCTCTGCCGCCGCGCAAGTTGACCCTCC
CCTGCACCTCAAAGCACGCCCTGACTGGTTGCCCAAGATCCCTGAAGGTT
GTGACTCAGATTACGAGTGCGAAGGGACGGAGAGCTGCTGCGACTTCATC
TTCTTCAAGATGTGCTGCTCGGATGGGGGACACACCCAAGAGGCTTGGAC
ACCCGTGCCCATCCCTGTACGACCAGGTGATGGATACCAACAAGGTGGAG
GGTATGCAGGGAATGGAGGGTTCTCGGGCAGTGGGGGCCTGTACCGATAG
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protein sequence of NO13G01010.1

>NO13G01010.1-protein ID=NO13G01010.1-protein|Name=NO13G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MAIQSTRYLAVTAALLVGLLIGLVDAFLPLGIRNSLHRASRAQSPTTAPP
SSTSTTFLSAAAQVDPPLHLKARPDWLPKIPEGCDSDYECEGTESCCDFI
FFKMCCSDGGHTQEAWTPVPIPVRPGDGYQQGGGYAGNGGFSGSGGLYR*
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mRNA from alignment at chr13:325401..325850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01010.1 ID=NO13G01010.1|Name=NO13G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=450bp|location=Sequence derived from alignment at chr13:325401..325850- (Nannochloropsis oceanica)
ATGGCGATTCAATCAACACGTTATCTGGCCGTGACAGCCGCCCTCCTAGT GGGCTTGCTGATCGGCCTAGTCGACGCCTTCTTGCCCTTGGGCATTCGTA ACTCGTTGCACCGTGCGTCCCGAGCCCAGTCCCCCACCACGGCCCCACCG TCATCAACAAGCACCACCTTCCTCTCTGCCGCCGCGCAAGTTGACCCTCC CCTGCACCTCAAAGCACGCCCTGACTGGTTGCCCAAGATCCCTGAAGGTT GTGACTCAGATTACGAGTGCGAAGGGACGGAGAGCTGCTGCGACTTCATC TTCTTCAAGATGTGCTGCTCGGATGGGGGACACACCCAAGAGGCTTGGAC ACCCGTGCCCATCCCTGTACGACCAGGTGATGGATACCAACAAGGTGGAG GGTATGCAGGGAATGGAGGGTTCTCGGGCAGTGGGGGCCTGTACCGATAG
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Coding sequence (CDS) from alignment at chr13:325401..325850-

>NO13G01010.1 ID=NO13G01010.1|Name=NO13G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at chr13:325401..325850- (Nannochloropsis oceanica)
ATGGCGATTCAATCAACACGTTATCTGGCCGTGACAGCCGCCCTCCTAGT
GGGCTTGCTGATCGGCCTAGTCGACGCCTTCTTGCCCTTGGGCATTCGTA
ACTCGTTGCACCGTGCGTCCCGAGCCCAGTCCCCCACCACGGCCCCACCG
TCATCAACAAGCACCACCTTCCTCTCTGCCGCCGCGCAAGTTGACCCTCC
CCTGCACCTCAAAGCACGCCCTGACTGGTTGCCCAAGATCCCTGAAGGTT
GTGACTCAGATTACGAGTGCGAAGGGACGGAGAGCTGCTGCGACTTCATC
TTCTTCAAGATGTGCTGCTCGGATGGGGGACACACCCAAGAGGCTTGGAC
ACCCGTGCCCATCCCTGTACGACCAGGTGATGGATACCAACAAGGTGGAG
GGTATGCAGGGAATGGAGGGTTCTCGGGCAGTGGGGGCCTGTACCGATAG
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Synonyms
Publications