NO13G00900, NO13G00900 (gene) Nannochloropsis oceanica

Overview
NameNO13G00900
Unique NameNO13G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1666
Alignment locationchr13:291745..293410 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:291745..293410 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO13G00900 vs. NCBI_GenBank
Match: EWM30115.1 (hypothetical protein Naga_100878g5 [Nannochloropsis gaditana])

HSP 1 Score: 198.0 bits (502), Expect = 4.500e-47
Identity = 118/278 (42.45%), Postives = 163/278 (58.63%), Query Frame = 0 
Query:   44 MLFSRTTALVAMGLLVAGTSSASATVDRQVRSAINPRRVKSFKFCSRPVLDSMSFQPLTRLDGDSSLDNITIPYLFFPYNGVPDNLNDLYLYGALGNIMAADFGFKSNMNDCDSASNGDFNSTSLGTMVGTCKSIFSPFNATELFMSLENG-RRRLME---ANDVDQVRRNLQEEFFAYFETELYCTWKAIFNEPERKAGEKTVLTGTSIRTAVETGEDFVDGRSGFLSGNKPLVVSSVVKNLELFRRDRMLDEDPFVTAYTEYTVEYYRAKGWNPFY 318
            M+FS    ++    L   T  ASA   R   +A   R+V +F FC+RP LDS+SF P + +      D   +PY F PY+ VPD   D+Y  G   N+M++ FGF SN+  C +A+ GDFNSTS+GT+VG+C  I +  NAT++  +L +G  RRL E     +  Q  R +QEE   Y  T  YC W A+F  P+ K GE T ++G SIR++VET ED+V+   G L  NKP+++SS V+ L          E    TAYT+YTV+Y++ KGWNPFY
Sbjct:    1 MMFSSRVMILFAASLFLMTVPASALSGRTSTTA---RKVNNFNFCARPFLDSLSFWPSSDVLEGLGNDTFALPYFFIPYSKVPD--LDIYDLGVFANLMSSTFGFSSNIVPCANAAAGDFNSTSMGTLVGSCAPIQTDVNATQIIEALLDGPLRRLRELEVPQEKKQAHRRIQEELLDYLTTVCYCRWTAVFTAPKTKWGENTGMSGVSIRSSVETVEDYVETSMGNLRSNKPILLSSSVEGL------GDAPEAALETAYTQYTVQYFK-KGWNPFY 266
The following BLAST results are available for this feature:
BLAST of NO13G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30115.14.500e-4742.45hypothetical protein Naga_100878g5 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00900.1NO13G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596783gene_6921Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00900.1NO13G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00900 ID=NO13G00900|Name=NO13G00900|organism=Nannochloropsis oceanica|type=gene|length=1666bp
ATTTTTTTTCTCTTCCTTGATTGCCTGTTTGCTTGCTCGTACTTTGCACA
CGATGATAACCCCACGAGCACTTCAAATACCCGCATTTTTAACTTATCTA
ATTATTTTAGCATGGGCTGCAATGCAACAATTGTTGTGAGTGTCCTGTCG
CCCCCGGTCTTTCACTGCGCGGCCAGTTAGTTGCAAGCAGCCTACCGTAG
GAAATACGTTAAAACGCCTTCATAGTGACCAGTCGTAATCTAGGCAGGCA
TTTTAACAAAACAGAACACAATCTTCCTCCTTTCATGCCGGTTGCAACAA
ACCTACCCTGCCATGCACACGGTCACAACCAATCCAATCCCTTAGCTGAC
CTGCACATGTGTATAGCACACTACACAAACAATAGTTCTTGTTCCATTCA
GAAGCTCTTAACCATGCTCTTCTCTCGCACGACGGCGCTGGTCGCCATGG
GCCTTTTGGTGGCGGGCACTTCCAGCGCCTCCGCGACCGTGGATCGTCAG
GTCAGAAGCGCCATCAACCCCCGAAGGGTGAAGAGTTTCAAGTTCTGCTC
CCGTCCTGTTCTTGACTCGATGTCATTCCAGCCGCTAACGCGTCTTGACG
GGGATTCTTCCCTCGACAATATCACTATCCCCTACCTTTTCTTTCCGTAT
AATGGGGTCCCAGATAATTTGAATGACTTATACTTGTACGGAGCTCTTGG
TAACATTgtaagtagtggtgagggaatgagttaatgaaatgtgattgtgt
gaaagcgaagtaagccgtcctaacccctcttcctccatgcgatttccctt
ctcctacccctacgacagATGGCGGCGGATTTCGGGTTTAAAAGTAATAT
GAATGACTGCGATTCAGCTTCAAACGGTGACTTCAACAGTACCAGCTTGG
GTACGATGGTCGGCACGTGTAAATCAATTTTCAGTCCCTTCAACGCTACG
GAACTCTTTATGTCGCTGGAAAATGGACGTCGCCGCCTGATGGAAGCGAA
TGATGTTGATCAAGTGCGTCGCAATCTCCAAGAGGAATTTTTTGCGTATT
TTGAAACGGAGTTGTACTGCACGTGGAAAGCTATCTTCAACGAACCCGAG
AGAAAGGCGGGCGAGAAGACAGTCCTTACCGGGACTTCCATCCGTACGGC
TGTAGAGACGGGAGAGGATTTCGTGGACGGGCGAAGCGGCTTCCTCTCGG
GCAATAAGCCCCTCGTGGTCTCGTCCGTCGTGAAGAACCTGGAGCTCTTT
CGTAGGGATCGCATGCTTGATGAAGACCCTTTTGTTACGGCGTATACGGA
GTACACGGTAGAGTACTACAGGGCCAAGGGCTGGAACCCGTTCTACCTCT
CCTCGAAGTAAGAGCACGCGCGGGATACATGGGGGAATATATGGGGGACG
CTTTTCCCCGAAGGTGAGGGAAACGAGGTGATCTATGTAGTGATTTTATT
TGTGGCTATTTTTGACGCACAGTGGCGCTATTATTGCTTCCCGATCGTGT
GTCCACTTGAGTGTGTCGTGGTGTGCTGTGTGTATGTTTGGGGGTAATGC
CAGACTGAGAGAAGGGGGAGGAGGGGAAGGGTTCTTATCCATTTCGCACG
AACAAAGACTTTTTGTCCTTGACAATCGAAAGTATGATAATTGGGTAAAG
TGAAAGAAGCCTGGTG
back to top

protein sequence of NO13G00900.1

>NO13G00900.1-protein ID=NO13G00900.1-protein|Name=NO13G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPVATNLPCHAHGHNQSNPLADLHMCIAHYTNNSSCSIQKLLTMLFSRTT
ALVAMGLLVAGTSSASATVDRQVRSAINPRRVKSFKFCSRPVLDSMSFQP
LTRLDGDSSLDNITIPYLFFPYNGVPDNLNDLYLYGALGNIMAADFGFKS
NMNDCDSASNGDFNSTSLGTMVGTCKSIFSPFNATELFMSLENGRRRLME
ANDVDQVRRNLQEEFFAYFETELYCTWKAIFNEPERKAGEKTVLTGTSIR
TAVETGEDFVDGRSGFLSGNKPLVVSSVVKNLELFRRDRMLDEDPFVTAY
TEYTVEYYRAKGWNPFYLSSK*
back to top
Synonyms
Publications