NO13G00900.1, NO13G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00900.1
Unique NameNO13G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1555
Alignment locationchr13:291745..293410 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:291745..293410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00900.1 vs.
Match: EWM30115.1 (hypothetical protein Naga_100878g5 [Nannochloropsis gaditana])

HSP 1 Score: 198.0 bits (502), Expect = 4.500e-47
Identity = 118/278 (42.45%), Postives = 163/278 (58.63%), Query Frame = 0 
Query:   44 MLFSRTTALVAMGLLVAGTSSASATVDRQVRSAINPRRVKSFKFCSRPVLDSMSFQPLTRLDGDSSLDNITIPYLFFPYNGVPDNLNDLYLYGALGNIMAADFGFKSNMNDCDSASNGDFNSTSLGTMVGTCKSIFSPFNATELFMSLENGR-RRLMEAN---DVDQVRRNLQEEFFAYFETELYCTWKAIFNEPERKAGEKTVLTGTSIRTAVETGEDFVDGRSGFLSGNKPLVVSSVVKNLELFRRDRMLDEDPFVTAYTEYTVEYYRAKGWNPFY 318
            M+FS    ++    L   T  ASA   R   +A   R+V +F FC+RP LDS+SF P + +      D   +PY F PY+ VPD   D+Y  G   N+M++ FGF SN+  C +A+ GDFNSTS+GT+VG+C  I +  NAT++  +L +G  RRL E     +  Q  R +QEE   Y  T  YC W A+F  P+ K GE T ++G SIR++VET ED+V+   G L  NKP+++SS V+ L          E    TAYT+YTV+Y++ KGWNPFY
Sbjct:    1 MMFSSRVMILFAASLFLMTVPASALSGRTSTTA---RKVNNFNFCARPFLDSLSFWPSSDVLEGLGNDTFALPYFFIPYSKVPDL--DIYDLGVFANLMSSTFGFSSNIVPCANAAAGDFNSTSMGTLVGSCAPIQTDVNATQIIEALLDGPLRRLRELEVPQEKKQAHRRIQEELLDYLTTVCYCRWTAVFTAPKTKWGENTGMSGVSIRSSVETVEDYVETSMGNLRSNKPILLSSSVEGL------GDAPEAALETAYTQYTVQYFK-KGWNPFY 266
The following BLAST results are available for this feature:
BLAST of NO13G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30115.14.500e-4742.45hypothetical protein Naga_100878g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00900NO13G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00900.1NO13G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00900.1.cds1NO13G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00900.1.cds2NO13G00900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00900.1 ID=NO13G00900.1|Name=NO13G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp
ATTTTTTTTCTCTTCCTTGATTGCCTGTTTGCTTGCTCGTACTTTGCACA
CGATGATAACCCCACGAGCACTTCAAATACCCGCATTTTTAACTTATCTA
ATTATTTTAGCATGGGCTGCAATGCAACAATTGTTGTGAGTGTCCTGTCG
CCCCCGGTCTTTCACTGCGCGGCCAGTTAGTTGCAAGCAGCCTACCGTAG
GAAATACGTTAAAACGCCTTCATAGTGACCAGTCGTAATCTAGGCAGGCA
TTTTAACAAAACAGAACACAATCTTCCTCCTTTCATGCCGGTTGCAACAA
ACCTACCCTGCCATGCACACGGTCACAACCAATCCAATCCCTTAGCTGAC
CTGCACATGTGTATAGCACACTACACAAACAATAGTTCTTGTTCCATTCA
GAAGCTCTTAACCATGCTCTTCTCTCGCACGACGGCGCTGGTCGCCATGG
GCCTTTTGGTGGCGGGCACTTCCAGCGCCTCCGCGACCGTGGATCGTCAG
GTCAGAAGCGCCATCAACCCCCGAAGGGTGAAGAGTTTCAAGTTCTGCTC
CCGTCCTGTTCTTGACTCGATGTCATTCCAGCCGCTAACGCGTCTTGACG
GGGATTCTTCCCTCGACAATATCACTATCCCCTACCTTTTCTTTCCGTAT
AATGGGGTCCCAGATAATTTGAATGACTTATACTTGTACGGAGCTCTTGG
TAACATTATGGCGGCGGATTTCGGGTTTAAAAGTAATATGAATGACTGCG
ATTCAGCTTCAAACGGTGACTTCAACAGTACCAGCTTGGGTACGATGGTC
GGCACGTGTAAATCAATTTTCAGTCCCTTCAACGCTACGGAACTCTTTAT
GTCGCTGGAAAATGGACGTCGCCGCCTGATGGAAGCGAATGATGTTGATC
AAGTGCGTCGCAATCTCCAAGAGGAATTTTTTGCGTATTTTGAAACGGAG
TTGTACTGCACGTGGAAAGCTATCTTCAACGAACCCGAGAGAAAGGCGGG
CGAGAAGACAGTCCTTACCGGGACTTCCATCCGTACGGCTGTAGAGACGG
GAGAGGATTTCGTGGACGGGCGAAGCGGCTTCCTCTCGGGCAATAAGCCC
CTCGTGGTCTCGTCCGTCGTGAAGAACCTGGAGCTCTTTCGTAGGGATCG
CATGCTTGATGAAGACCCTTTTGTTACGGCGTATACGGAGTACACGGTAG
AGTACTACAGGGCCAAGGGCTGGAACCCGTTCTACCTCTCCTCGAAGTAA
GAGCACGCGCGGGATACATGGGGGAATATATGGGGGACGCTTTTCCCCGA
AGGTGAGGGAAACGAGGTGATCTATGTAGTGATTTTATTTGTGGCTATTT
TTGACGCACAGTGGCGCTATTATTGCTTCCCGATCGTGTGTCCACTTGAG
TGTGTCGTGGTGTGCTGTGTGTATGTTTGGGGGTAATGCCAGACTGAGAG
AAGGGGGAGGAGGGGAAGGGTTCTTATCCATTTCGCACGAACAAAGACTT
TTTGTCCTTGACAATCGAAAGTATGATAATTGGGTAAAGTGAAAGAAGCC
TGGTG
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protein sequence of NO13G00900.1

>NO13G00900.1-protein ID=NO13G00900.1-protein|Name=NO13G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPVATNLPCHAHGHNQSNPLADLHMCIAHYTNNSSCSIQKLLTMLFSRTT
ALVAMGLLVAGTSSASATVDRQVRSAINPRRVKSFKFCSRPVLDSMSFQP
LTRLDGDSSLDNITIPYLFFPYNGVPDNLNDLYLYGALGNIMAADFGFKS
NMNDCDSASNGDFNSTSLGTMVGTCKSIFSPFNATELFMSLENGRRRLME
ANDVDQVRRNLQEEFFAYFETELYCTWKAIFNEPERKAGEKTVLTGTSIR
TAVETGEDFVDGRSGFLSGNKPLVVSSVVKNLELFRRDRMLDEDPFVTAY
TEYTVEYYRAKGWNPFYLSSK*
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mRNA from alignment at chr13:291745..293410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00900.1 ID=NO13G00900.1|Name=NO13G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp|location=Sequence derived from alignment at chr13:291745..293410- (Nannochloropsis oceanica)
ATTTTTTTTCTCTTCCTTGATTGCCTGTTTGCTTGCTCGTACTTTGCACA
CGATGATAACCCCACGAGCACTTCAAATACCCGCATTTTTAACTTATCTA
ATTATTTTAGCATGGGCTGCAATGCAACAATTGTTGTGAGTGTCCTGTCG
CCCCCGGTCTTTCACTGCGCGGCCAGTTAGTTGCAAGCAGCCTACCGTAG
GAAATACGTTAAAACGCCTTCATAGTGACCAGTCGTAATCTAGGCAGGCA
TTTTAACAAAACAGAACACAATCTTCCTCCTTTCATGCCGGTTGCAACAA
ACCTACCCTGCCATGCACACGGTCACAACCAATCCAATCCCTTAGCTGAC
CTGCACATGTGTATAGCACACTACACAAACAATAGTTCTTGTTCCATTCA
GAAGCTCTTAACCATGCTCTTCTCTCGCACGACGGCGCTGGTCGCCATGG
GCCTTTTGGTGGCGGGCACTTCCAGCGCCTCCGCGACCGTGGATCGTCAG
GTCAGAAGCGCCATCAACCCCCGAAGGGTGAAGAGTTTCAAGTTCTGCTC
CCGTCCTGTTCTTGACTCGATGTCATTCCAGCCGCTAACGCGTCTTGACG
GGGATTCTTCCCTCGACAATATCACTATCCCCTACCTTTTCTTTCCGTAT
AATGGGGTCCCAGATAATTTGAATGACTTATACTTGTACGGAGCTCTTGG
TAACATTGTAAGTAGTGGTGAGGGAATGAGTTAATGAAATGTGATTGTGT
GAAAGCGAAGTAAGCCGTCCTAACCCCTCTTCCTCCATGCGATTTCCCTT
CTCCTACCCCTACGACAGATGGCGGCGGATTTCGGGTTTAAAAGTAATAT
GAATGACTGCGATTCAGCTTCAAACGGTGACTTCAACAGTACCAGCTTGG
GTACGATGGTCGGCACGTGTAAATCAATTTTCAGTCCCTTCAACGCTACG
GAACTCTTTATGTCGCTGGAAAATGGACGTCGCCGCCTGATGGAAGCGAA
TGATGTTGATCAAGTGCGTCGCAATCTCCAAGAGGAATTTTTTGCGTATT
TTGAAACGGAGTTGTACTGCACGTGGAAAGCTATCTTCAACGAACCCGAG
AGAAAGGCGGGCGAGAAGACAGTCCTTACCGGGACTTCCATCCGTACGGC
TGTAGAGACGGGAGAGGATTTCGTGGACGGGCGAAGCGGCTTCCTCTCGG
GCAATAAGCCCCTCGTGGTCTCGTCCGTCGTGAAGAACCTGGAGCTCTTT
CGTAGGGATCGCATGCTTGATGAAGACCCTTTTGTTACGGCGTATACGGA
GTACACGGTAGAGTACTACAGGGCCAAGGGCTGGAACCCGTTCTACCTCT
CCTCGAAGTAAGAGCACGCGCGGGATACATGGGGGAATATATGGGGGACG
CTTTTCCCCGAAGGTGAGGGAAACGAGGTGATCTATGTAGTGATTTTATT
TGTGGCTATTTTTGACGCACAGTGGCGCTATTATTGCTTCCCGATCGTGT
GTCCACTTGAGTGTGTCGTGGTGTGCTGTGTGTATGTTTGGGGGTAATGC
CAGACTGAGAGAAGGGGGAGGAGGGGAAGGGTTCTTATCCATTTCGCACG
AACAAAGACTTTTTGTCCTTGACAATCGAAAGTATGATAATTGGGTAAAG
TGAAAGAAGCCTGGTG
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Coding sequence (CDS) from alignment at chr13:291745..293410-

>NO13G00900.1 ID=NO13G00900.1|Name=NO13G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr13:291745..293410- (Nannochloropsis oceanica)
ATGCCGGTTGCAACAAACCTACCCTGCCATGCACACGGTCACAACCAATC
CAATCCCTTAGCTGACCTGCACATGTGTATAGCACACTACACAAACAATA
GTTCTTGTTCCATTCAGAAGCTCTTAACCATGCTCTTCTCTCGCACGACG
GCGCTGGTCGCCATGGGCCTTTTGGTGGCGGGCACTTCCAGCGCCTCCGC
GACCGTGGATCGTCAGGTCAGAAGCGCCATCAACCCCCGAAGGGTGAAGA
GTTTCAAGTTCTGCTCCCGTCCTGTTCTTGACTCGATGTCATTCCAGCCG
CTAACGCGTCTTGACGGGGATTCTTCCCTCGACAATATCACTATCCCCTA
CCTTTTCTTTCCGTATAATGGGGTCCCAGATAATTTGAATGACTTATACT
TGTACGGAGCTCTTGGTAACATTATGGCGGCGGATTTCGGGTTTAAAAGT
AATATGAATGACTGCGATTCAGCTTCAAACGGTGACTTCAACAGTACCAG
CTTGGGTACGATGGTCGGCACGTGTAAATCAATTTTCAGTCCCTTCAACG
CTACGGAACTCTTTATGTCGCTGGAAAATGGACGTCGCCGCCTGATGGAA
GCGAATGATGTTGATCAAGTGCGTCGCAATCTCCAAGAGGAATTTTTTGC
GTATTTTGAAACGGAGTTGTACTGCACGTGGAAAGCTATCTTCAACGAAC
CCGAGAGAAAGGCGGGCGAGAAGACAGTCCTTACCGGGACTTCCATCCGT
ACGGCTGTAGAGACGGGAGAGGATTTCGTGGACGGGCGAAGCGGCTTCCT
CTCGGGCAATAAGCCCCTCGTGGTCTCGTCCGTCGTGAAGAACCTGGAGC
TCTTTCGTAGGGATCGCATGCTTGATGAAGACCCTTTTGTTACGGCGTAT
ACGGAGTACACGGTAGAGTACTACAGGGCCAAGGGCTGGAACCCGTTCTA
CCTCTCCTCGAAGTAA
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Synonyms
Publications