NO13G00770, NO13G00770 (gene) Nannochloropsis oceanica

Overview
NameNO13G00770
Unique NameNO13G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2014
Alignment locationchr13:254485..256498 +

Link to JBrowse

Properties
Property NameValue
DescriptionPhotosystem ii s4 domain protein, or rna-binding s4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:254485..256498 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO13G00770 vs. NCBI_GenBank
Match: XP_005855323.1 (rna-binding s4 [Nannochloropsis gaditana CCMP526] >EKU21042.1 rna-binding s4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 444.5 bits (1142), Expect = 2.900e-121
Identity = 226/274 (82.48%), Postives = 253/274 (92.34%), Query Frame = 0
Query:   63 GGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            GGGNS+NREELRKSLVAEG++DILAARAVEAADKA++ WEMQV++FCRPPEVAT+ RVL RVADL+IT DGGFPQAERQRVFF+R +DY +D+E  R+ER  Y  ++SVEGNFIFD+A+HRDFLGALLGTGI REKVGDILLQGERGAHV++AP+VAEYV+ +LA+VRSVPVKNK I L +LGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIE GDVLVNWKE  SAN+ LKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKF+
Sbjct:   52 GGGNSVNREELRKSLVAEGLDDILAARAVEAADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCDGGFPQAERQRVFFSRALDYAVDEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGERGAHVVVAPDVAEYVVLSLAAVRSVPVKNKPIALADLGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIEGGDVLVNWKEITSANAQLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFV 325          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: EWM21747.1 (photosystem ii s4 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 2.600e-77
Identity = 148/193 (76.68%), Postives = 175/193 (90.67%), Query Frame = 0
Query:   63 GGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQ 256
            GGGNS+NREELRKSLVAEG++DILAARAVEAADKA++ WEMQV++FCRPPEVAT+ RVL RVADL+IT  GGFPQAERQRVFF+R +DY +D+E  R+ER  Y  ++SVEGNFIFD+A+HRDFLGALLGTGI REKVGDILLQGERGAHV++AP+VAEYV+ +LA+VRSVPVKNK I L +LGVRPPVTKE++
Sbjct:   52 GGGNSVNREELRKSLVAEGLDDILAARAVEAADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCGGGFPQAERQRVFFSRALDYAVDEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGERGAHVVVAPDVAEYVVLSLAAVRSVPVKNKPIALADLGVRPPVTKEVR 244          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_096730745.1 (photosystem II S4 domain protein [Nostoc carneum] >BAY33641.1 RNA-binding S4 [Nostoc carneum NIES-2107])

HSP 1 Score: 264.6 bits (675), Expect = 4.100e-67
Identity = 143/270 (52.96%), Postives = 191/270 (70.74%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K     GVE+    AR ++ A++A+  WE+ + +F  PPE+A I+RV  R+ ++ +   GG+PQAERQR+  AR  +  LDQ Q         T++ + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA  I+APE+AE++   L  VRSVPVK + I + EL VR P  KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE   A+S +K GD++ IRGKGRLEV EV  T K ++RV++T+F+
Sbjct:    2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVAWGGYPQAERQRLAIAR-AEIPLDQSQ------VAVTALEIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVAPELAEFLEMNLKQVRSVPVKTQPIEISELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVSQASSQVKTGDLIAIRGKGRLEVGEVAVTKKDRYRVQLTRFM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_045867901.1 (MULTISPECIES: photosystem II S4 domain protein [Nostocales] >EKF04672.1 hypothetical protein FDUTEX481_00829 [Tolypothrix sp. PCC 7601] >BAY92112.1 RNA-binding S4 domain-containing protein [Fremyella diplosiphon NIES-3275])

HSP 1 Score: 263.5 bits (672), Expect = 9.200e-67
Identity = 141/269 (52.42%), Postives = 191/269 (71.00%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL KS+  E  + +  AR ++ A++A+  WE+ + +F  PPE+A I+RV  R+ ++ +   GG+PQAERQRV  AR  +  LD  Q         T++ + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA  I+APE+AE++   L  VRSVPVK + I + EL VR P  KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE   A+S +K GD++ IRGKGRLEV EV  T K ++RV++T+++
Sbjct:    2 LPREELLKSV--ENRDSV--ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVAWGGYPQAERQRVAIAR-AELPLDPSQ------VALTALEIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVAPELAEFLEMNLKQVRSVPVKTQPIEISELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVSQASSQVKTGDLIAIRGKGRLEVGEVAITKKDRYRVQLTRYM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_096603847.1 (photosystem II S4 domain protein [Calothrix sp. NIES-2100] >BAY25075.1 RNA-binding S4 domain-containing protein [Calothrix sp. NIES-2100])

HSP 1 Score: 263.5 bits (672), Expect = 9.200e-67
Identity = 140/269 (52.04%), Postives = 191/269 (71.00%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL KS+  E  + +  AR ++ A++A+  WE+ + +F  PPE+A I+RV  R+ ++ +   GG+PQAERQR+  AR  +  LDQ Q          ++ + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA VI+APE+ E++  +L  VRSVPVK + I   EL VR P  KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE   A+S +K GD++ IRGKGRLEV EV  T K ++RV++T+++
Sbjct:    2 LPREELLKSV--ENRDSV--ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLLAWGGYPQAERQRLAIAR-AEIPLDQSQ------VALVALEIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQVIVAPELTEFLEMSLKQVRSVPVKTQRIDASELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVSQASSQVKTGDLIAIRGKGRLEVGEVAVTKKDRYRVQLTRYV 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_096581111.1 (MULTISPECIES: photosystem II S4 domain protein [Nostocales] >BAZ01505.1 RNA-binding S4 [Tolypothrix tenuis PCC 7101] >BAZ74572.1 RNA-binding S4 [Aulosira laxa NIES-50])

HSP 1 Score: 263.5 bits (672), Expect = 9.200e-67
Identity = 142/270 (52.59%), Postives = 191/270 (70.74%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K     GVE+    AR ++ A++A+  WE+ + +F  PPE+A I+RV  R+ ++ +   GG+PQAERQR+  AR  +  LDQ Q         T++ + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA  I+APE+AE++   L  VRSVPVK + I + EL VR P  KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWK+   A+S +K GD++ IRGKGRLEV EV  T K ++RV++T+F+
Sbjct:    2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVAWGGYPQAERQRLAIAR-AEIPLDQSQ------VAVTALEIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVAPELAEFLEMNLKQVRSVPVKTQPIEISELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKDVSQASSQVKTGDLIAIRGKGRLEVGEVAVTKKDRYRVQLTRFM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_073601386.1 (photosystem II S4 domain protein [Hydrococcus rivularis] >OKH19677.1 photosystem II S4 domain protein [Hydrococcus rivularis NIES-593])

HSP 1 Score: 263.1 bits (671), Expect = 1.200e-66
Identity = 141/269 (52.42%), Postives = 192/269 (71.38%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K +  E  E+I  AR V+ A++AL  WEM + +F  PP +A  +++  R+ ++     GG+PQAERQR+  AR+    LD  Q         T++ + GNF+FD A+HRDFLGA+LGTGI R+KVGDI++ GERGA V++ PE+AE++ T+L  VRSVPVK + I L EL VRPP  KE+ +VEASMRLDA+ASAG GMSRSK+ D I +GDV VNWKE   A+  +K GD++++RGKGRL+VNEV+ T K ++RV++T+FI
Sbjct:    2 LPREELLKGV--ENREEI--ARIVDKAEQALRTWEMALTDFLSPPVLAEAQQIFGRLTEIEYIAWGGYPQAERQRIGMARS-HIRLDPSQ------IQITALDIAGNFLFDPANHRDFLGAILGTGIVRDKVGDIIVLGERGAQVLVVPEIAEFLETSLVQVRSVPVKTQRIDLSELKVRPPQKKEITTVEASMRLDAIASAGFGMSRSKMADAIAAGDVRVNWKEVTQASYTVKIGDLISVRGKGRLQVNEVDLTKKQRYRVQLTRFI 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: OKY70212.1 (photosystem II S4 domain protein [Limnothrix sp. CACIAM 69d])

HSP 1 Score: 262.7 bits (670), Expect = 1.600e-66
Identity = 136/263 (51.71%), Postives = 185/263 (70.34%), Query Frame = 0
Query:   74 RKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            R++L+         ARA++ AD++L  WE  V +F  PPE+A I+ V   +A++   P GG+PQAERQRV FAR+   EL    +  E      ++ + GNF+FD A+HRDFLGALLGTG+ R+KVGD+L+QGERGA  ++APEV E++  +L  VRSVPVK +AIPL EL VR P  KEM +VEAS+RLDA+ASAG G+SRSK+ + I  GDV VNWK+  S + LLK GD+V + GKGRL + E+ TT K ++RV++T+F+
Sbjct:    4 RETLLKRATHRDTIARAIDLADQSLKTWEPAVSDFLSPPEIADIQTVFSGLAEVVFMPWGGYPQAERQRVAFARS---ELPLVTDAIE----VAALEIAGNFLFDPATHRDFLGALLGTGLVRDKVGDLLVQGERGAQALVAPEVVEFLELSLTQVRSVPVKTRAIPLSELKVREPKKKEMTTVEASLRLDAIASAGFGISRSKMAEAISGGDVRVNWKDITSPSHLLKSGDLVVLAGKGRLSIGEIATTKKDRYRVQLTRFV 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_068381033.1 (photosystem II S4 domain protein [Leptolyngbya sp. NIES-3755] >BAU10440.1 RNA-binding protein S4 [Leptolyngbya sp. NIES-3755])

HSP 1 Score: 261.9 bits (668), Expect = 2.700e-66
Identity = 139/269 (51.67%), Postives = 190/269 (70.63%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L RE+L K +  E  E I  AR ++ A+KA+  WE+   +F  PPE+A ++R   R+ ++ +   GG+PQAERQRV  AR+ +  LD  Q          ++ + GNF+FD+A+HRDFLGALLGTGI REKVGDI++ GERGA  I+ PE+ +++ T+L  VRSVPVK + IP +EL +R P  KEM +VEASMRLDA+ASAG GMSRSK+ +MI +GDV VNWKET S +  +K GD++ IRGKGR+EV EV  T K ++RV++T+F+
Sbjct:    2 LPREDLLKGV--ENRETI--ARVIDQAEKAIKTWEVVTSDFLSPPELAEVQRSFSRLTEVQLIAWGGYPQAERQRVAIARS-EIPLDASQ------VELAALDIAGNFLFDQATHRDFLGALLGTGIVREKVGDIIVLGERGAQAIVTPELVDFLQTSLNQVRSVPVKVEPIPFEELKIREPKKKEMTTVEASMRLDAIASAGFGMSRSKMAEMISAGDVRVNWKETTSTSYSVKSGDLIAIRGKGRVEVGEVMVTKKDRYRVQLTRFV 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_069068203.1 (photosystem II S4 domain protein [Nostoc sp. KVJ20] >ODH02887.1 photosystem II S4 domain protein [Nostoc sp. KVJ20])

HSP 1 Score: 261.5 bits (667), Expect = 3.500e-66
Identity = 138/270 (51.11%), Postives = 190/270 (70.37%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K     GVE+    AR ++ A++A+  WE+ + +F  PPE+A I+RV  R+ ++ +T  GG+PQAERQR+  AR+ +  LDQ Q          +V + GNF+FD ASHRDFLGA+LGTGI REK GD+++ GERGA  I+APE+ E++  +L  VRSVPVK + I + EL VR P  KE+ +VEAS+RLDA+ASAG GMSRSK+ D I++GDV VNWKE   A+S +K GD++ IR KGRLEV E+  T K ++RV++T+++
Sbjct:    2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFNRLTEVQLTAWGGYPQAERQRIVIARS-ELPLDQSQ------VSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDVIVLGERGAQAIVAPELVEFLEMSLKQVRSVPVKTQQIEVTELRVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDAGDVRVNWKEVTQASSQVKSGDLIAIRSKGRLEVGEIAVTKKDRYRVQLTRYV 259          
The following BLAST results are available for this feature:
BLAST of NO13G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855323.12.900e-12182.48rna-binding s4 [Nannochloropsis gaditana CCMP526] ... [more]
EWM21747.12.600e-7776.68photosystem ii s4 domain protein [Nannochloropsis ... [more]
WP_096730745.14.100e-6752.96photosystem II S4 domain protein [Nostoc carneum] ... [more]
WP_045867901.19.200e-6752.42MULTISPECIES: photosystem II S4 domain protein [No... [more]
WP_096603847.19.200e-6752.04photosystem II S4 domain protein [Calothrix sp. NI... [more]
WP_096581111.19.200e-6752.59MULTISPECIES: photosystem II S4 domain protein [No... [more]
WP_073601386.11.200e-6652.42photosystem II S4 domain protein [Hydrococcus rivu... [more]
OKY70212.11.600e-6651.71photosystem II S4 domain protein [Limnothrix sp. C... [more]
WP_068381033.12.700e-6651.67photosystem II S4 domain protein [Leptolyngbya sp.... [more]
WP_069068203.13.500e-6651.11photosystem II S4 domain protein [Nostoc sp. KVJ20... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001823NSK001823Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00770.1NO13G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G00770.2NO13G00770.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G00770.3NO13G00770.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596840gene_6935Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100303g8gene8686Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00770.1NO13G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G00770.2NO13G00770.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G00770.3NO13G00770.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00770 ID=NO13G00770|Name=NO13G00770|organism=Nannochloropsis oceanica|type=gene|length=2014bp
ACAGGCACCTCTAGGATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGC
AGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCC
TTTTCCTGATTGTGACCATTACAGCGACGCACGCTTTTCTCCCTTCCTAC
CTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGC
CGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGGAAATCCCTCGTCG
CCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGAT
AAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCC
TGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCA
TCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTC
GCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAG
AGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACA
AGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACA
AGGGAGAAGgtaaaaggaacaagaaagaaaacagacaggcaggcagaaag
gcagggagaggggaagagggggagggcaggaagaaggaaaagatgggact
tgtgtcgtcaacttcgaagcgggccttttctccccctttaccacgacctc
tcatgtcatctctttgcattcttagGTGGGTGACATTTTACTGCAAGGCG
AACGAGGCGCTCACGTAATCATGGCTCCGGAGGTAGCCGAATACGTCATG
ACCGCGTTGGCATCCGTGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCC
TCTGAAAGAGTTGGGGGTAAGGCCCCCGGTGACCAAGGAGGTAAGAAGTG
GAATAGGGAAGGGTCGTGAGAGGGCGGACGGGAACTAGCGACCGATGGCT
AGAAGAGGAGGAGACGTCGTGAAGAATACTCGGCTTTCTCGTCCTGAAGG
CGTGCGTATTTGTACATGCTCGCTTGTCGTCTTCACTTGTTCGGACACAC
CTTCCTTCCTCGCTCTTTCTTCCACACACAGATGCAATCGGTGGAGGCTT
CCATGCGTCTGGATGCAGTGGCCAGCGCCGGGATGGGCATGAGCCGGAGC
AAGCTCAAGGTAGGTAGGTAGGCCACATCTCCACGGGCCCCGGGGACACT
CACACCTTTCCCTTCCCCTTTCCCCCTTCACCCTTTCTTTTTTGTGCACG
AAAATGATTTTGGCATTGCTTAGGGTGTCTTGTTCTGGTGCATGTATTCC
TTTTCTACTGCCCTATCTGGCAGCCAAAAATGTGCTTCCGTCGAGCTAAA
ATTTTATCTCCAACTCAACATTTCTTTTCCTCCTTCCATTCCTCCCTCCC
GCCCTCCTCCCTTTTCTCGTAGGATATGATTGAGAGCGGCGACGTTCTAG
TAAATTGGAAGGAGACGAAATCCGCCAACTCGTTGTTGAAAGGCGGTGAC
ATCGTCACCATCCGTGGAAAAGGCCGTCTGGAGGTCAACGAGGTTGAGAC
GACGAGCAAAGGCAAATTCCGCGTCAAGATGACCAAGTTTATCTAGGCGT
CATCTAAGACCCGATGGGATCAGGTCGAGGGATGGAATGACGGGAGTGTG
GGATCGAGGAGGGAGGGGAGGGTAAGAGGGAGGCTTACCCATCAAGCAGC
AGCAGCAGCAGCAGCAGCAGTAGCAGTTGCGATCATGACCATCACAGAGA
CCCTTCATCCTTAGGCATGCGGGAGCCGGTGAGCATCAGGAGGAAATGAT
GGAACAGTTGTATATCCATGTGTTAGAAAAAGAATCTGCAGACAAGAATA
AGGAGTAAGCGGAGCACAAACACTAGCGACATTAGAGAGAGAAAGAGGGA
GACATAAAACAAAGAATTGAATGAAGATTGATTTAAAGAAGGAAAATCTA
ACGACACTGTGGAA
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protein sequence of NO13G00770.1

>NO13G00770.1-protein ID=NO13G00770.1-protein|Name=NO13G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MSNPAARRRAAAVVAARASPHLSPRLLLLFLIVTITATHAFLPSYLPSFS
SSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTN
WEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVD
YELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVG
DILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPV
TKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSL
LKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI*
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protein sequence of NO13G00770.2

>NO13G00770.2-protein ID=NO13G00770.2-protein|Name=NO13G00770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MSNPAARRRAAAVVAARASPHLSPRLLLLFLIVTITATHAFLPSYLPSFS
SSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTN
WEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVD
YELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVK
GTRKKTDRQAERQGEGKRGRAGRRKRWDLCRQLRSGPFLPLYHDLSCHLF
AFLGG*
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protein sequence of NO13G00770.3

>NO13G00770.3-protein ID=NO13G00770.3-protein|Name=NO13G00770.3|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MSNPAARRRAAAVVAARASPHLSPRLLLLFLIVTITATHAFLPSYLPSFS
SSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTN
WEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVD
YELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVG
DILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPV
TKEVRSGIGKGRERADGN*
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Synonyms
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