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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:254485..256498 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00770.2 vs.
Match: XP_005855323.1 (rna-binding s4 [Nannochloropsis gaditana CCMP526]; EKU21042.1 rna-binding s4 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 220.7 bits (561), Expect = 5.200e-54 Identity = 118/183 (64.48%), Postives = 142/183 (77.60%), Query Frame = 0
Query: 17 RASPHLSPRLLLLFLIVTITATHAFLPSYLPSFSSSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKV 200
R P RLLLL ++ + AF+ S + R+P GGGNS+NREELRKSLVAEG++DILAARAVEAADKA++ WEMQV++FCRPPEVAT+ RVL RVADL+IT DGGFPQAERQRVFF+R +DY +D+E R+ER Y ++SVEGNFIFD+A+HRDFLGALLGTGI REKV
Sbjct: 11 RRGPLNHVRLLLLAVLAIMVPVPAFV-----SIFPAPPRAPRLHAGGGGNSVNREELRKSLVAEGLDDILAARAVEAADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCDGGFPQAERQRVFFSRALDYAVDEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKV 188
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00770.2 ID=NO13G00770.2|Name=NO13G00770.2|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp ACAGGCACCTCTAGGATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGC AGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCC TTTTCCTGATTGTGACCATTACAGCGACGCACGCTTTTCTCCCTTCCTAC CTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGC CGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGGAAATCCCTCGTCG CCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGAT AAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCC TGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCA TCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTC GCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAG AGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACA AGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACA AGGGAGAAGGTAAAAGGAACAAGAAAGAAAACAGACAGGCAGGCAGAAAG GCAGGGAGAGGGGAAGAGGGGGAGGGCAGGAAGAAGGAAAAGATGGGACT TGTGTCGTCAACTTCGAAGCGGGCCTTTTCTCCCCCTTTACCACGACCTC TCATGTCATCTCTTTGCATTCTTAGGTGGGTGACATTTTACTGCAAGGCG AACGAGGCGCTCACGTAATCATGGCTCCGGAGGTAGCCGAATACGTCATG ACCGCGTTGGCATCCGTGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCC TCTGAAAGAGTTGGGGGTAAGGCCCCCGGTGACCAAGGAGATGCAATCGG TGGAGGCTTCCATGCGTCTGGATGCAGTGGCCAGCGCCGGGATGGGCATG AGCCGGAGCAAGCTCAAGGATATGATTGAGAGCGGCGACGTTCTAGTAAA TTGGAAGGAGACGAAATCCGCCAACTCGTTGTTGAAAGGCGGTGACATCG TCACCATCCGTGGAAAAGGCCGTCTGGAGGTCAACGAGGTTGAGACGACG AGCAAAGGCAAATTCCGCGTCAAGATGACCAAGTTTATCTAGGCGTCATC TAAGACCCGATGGGATCAGGTCGAGGGATGGAATGACGGGAGTGTGGGAT CGAGGAGGGAGGGGAGGGTAAGAGGGAGGCTTACCCATCAAGCAGCAGCA GCAGCAGCAGCAGCAGTAGCAGTTGCGATCATGACCATCACAGAGACCCT TCATCCTTAGGCATGCGGGAGCCGGTGAGCATCAGGAGGAAATGATGGAA CAGTTGTATATCCATGTGTTAGAAAAAGAATCTGCAGACAAGAATAAGGA GTAAGCGGAGCACAAACACTAGCGACATTAGAGAGAGAAAGAGGGAGACA TAAAACAAAGAATTGAATGAAGATTGATTTAAAGAAGGAAAATCTAACGA CACTGTGGAA back to topprotein sequence of NO13G00770.2 >NO13G00770.2-protein ID=NO13G00770.2-protein|Name=NO13G00770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp MSNPAARRRAAAVVAARASPHLSPRLLLLFLIVTITATHAFLPSYLPSFS SSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTN WEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVD YELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVK GTRKKTDRQAERQGEGKRGRAGRRKRWDLCRQLRSGPFLPLYHDLSCHLF AFLGG* back to topmRNA from alignment at chr13:254485..256498+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00770.2 ID=NO13G00770.2|Name=NO13G00770.2|organism=Nannochloropsis oceanica|type=mRNA|length=2014bp|location=Sequence derived from alignment at chr13:254485..256498+ (Nannochloropsis oceanica) ACAGGCACCTCTAGGATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGC
AGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCC
TTTTCCTGATTGTGACCATTACAGCGACGCACGCTTTTCTCCCTTCCTAC
CTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGC
CGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGGAAATCCCTCGTCG
CCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGAT
AAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCC
TGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCA
TCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTC
GCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAG
AGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACA
AGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACA
AGGGAGAAGGTAAAAGGAACAAGAAAGAAAACAGACAGGCAGGCAGAAAG
GCAGGGAGAGGGGAAGAGGGGGAGGGCAGGAAGAAGGAAAAGATGGGACT
TGTGTCGTCAACTTCGAAGCGGGCCTTTTCTCCCCCTTTACCACGACCTC
TCATGTCATCTCTTTGCATTCTTAGGTGGGTGACATTTTACTGCAAGGCG
AACGAGGCGCTCACGTAATCATGGCTCCGGAGGTAGCCGAATACGTCATG
ACCGCGTTGGCATCCGTGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCC
TCTGAAAGAGTTGGGGGTAAGGCCCCCGGTGACCAAGGAGGTAAGAAGTG
GAATAGGGAAGGGTCGTGAGAGGGCGGACGGGAACTAGCGACCGATGGCT
AGAAGAGGAGGAGACGTCGTGAAGAATACTCGGCTTTCTCGTCCTGAAGG
CGTGCGTATTTGTACATGCTCGCTTGTCGTCTTCACTTGTTCGGACACAC
CTTCCTTCCTCGCTCTTTCTTCCACACACAGATGCAATCGGTGGAGGCTT
CCATGCGTCTGGATGCAGTGGCCAGCGCCGGGATGGGCATGAGCCGGAGC
AAGCTCAAGGTAGGTAGGTAGGCCACATCTCCACGGGCCCCGGGGACACT
CACACCTTTCCCTTCCCCTTTCCCCCTTCACCCTTTCTTTTTTGTGCACG
AAAATGATTTTGGCATTGCTTAGGGTGTCTTGTTCTGGTGCATGTATTCC
TTTTCTACTGCCCTATCTGGCAGCCAAAAATGTGCTTCCGTCGAGCTAAA
ATTTTATCTCCAACTCAACATTTCTTTTCCTCCTTCCATTCCTCCCTCCC
GCCCTCCTCCCTTTTCTCGTAGGATATGATTGAGAGCGGCGACGTTCTAG
TAAATTGGAAGGAGACGAAATCCGCCAACTCGTTGTTGAAAGGCGGTGAC
ATCGTCACCATCCGTGGAAAAGGCCGTCTGGAGGTCAACGAGGTTGAGAC
GACGAGCAAAGGCAAATTCCGCGTCAAGATGACCAAGTTTATCTAGGCGT
CATCTAAGACCCGATGGGATCAGGTCGAGGGATGGAATGACGGGAGTGTG
GGATCGAGGAGGGAGGGGAGGGTAAGAGGGAGGCTTACCCATCAAGCAGC
AGCAGCAGCAGCAGCAGCAGTAGCAGTTGCGATCATGACCATCACAGAGA
CCCTTCATCCTTAGGCATGCGGGAGCCGGTGAGCATCAGGAGGAAATGAT
GGAACAGTTGTATATCCATGTGTTAGAAAAAGAATCTGCAGACAAGAATA
AGGAGTAAGCGGAGCACAAACACTAGCGACATTAGAGAGAGAAAGAGGGA
GACATAAAACAAAGAATTGAATGAAGATTGATTTAAAGAAGGAAAATCTA
ACGACACTGTGGAA back to topCoding sequence (CDS) from alignment at chr13:254485..256498+ >NO13G00770.2 ID=NO13G00770.2|Name=NO13G00770.2|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr13:254485..256498+ (Nannochloropsis oceanica) ATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGCAGTAGTAGCTGCCCG CGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCCTTTTCCTGATTGTGA CCATTACAGCGACGCACGCTTTTCTCCCTTCCTACCTCCCGTCCTTCTCC TCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGCCGGAGGGGGCAACAG TCTCAACCGCGAGGAACTACGGAAATCCCTCGTCGCCGAAGGGGTCGAAG ACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGATAAAGCCCTGACGAAC TGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCCTGAAGTAGCAACCAT CAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCATCACGCCCGACGGCG GATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTCGCCCGGACAGTTGAC TACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAGAGAAGCATACTTCAC CTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACAAGGCGAGCCATAGGG ATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACAAGGGAGAAGGTAAAA GGAACAAGAAAGAAAACAGACAGGCAGGCAGAAAGGCAGGGAGAGGGGAA GAGGGGGAGGGCAGGAAGAAGGAAAAGATGGGACTTGTGTCGTCAACTTC GAAGCGGGCCTTTTCTCCCCCTTTACCACGACCTCTCATGTCATCTCTTT GCATTCTTAGGTGGGTGA back to top
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