NO13G00760, NO13G00760 (gene) Nannochloropsis oceanica

Overview
NameNO13G00760
Unique NameNO13G00760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1122
Alignment locationchr13:253058..254179 -

Link to JBrowse

Properties
Property NameValue
DescriptionTwo component transcriptional family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:253058..254179 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016032Sig_transdc_resp-reg_C-effctor
IPR000792Tscrpt_reg_LuxR_C
Homology
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BLAST of NO13G00760 vs. NCBI_GenBank
Match: XP_005855317.1 (two component transcriptional family [Nannochloropsis gaditana CCMP526] >EKU21036.1 two component transcriptional family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 328.2 bits (840), Expect = 3.400e-86
Identity = 181/319 (56.74%), Postives = 210/319 (65.83%), Query Frame = 0 
Query:   56 LDAGLSWRTDEIYHSQPDFPVLFLATRNETYAREVERHFGGQGYFVRSSRTLTRLAKMVKTTRPEGILISDHLSTSHILGFLANLRDLPDLWLIPIFIVHD-LPSPTAATAAVGGSDGTAVDGEGSGKQEXXXXXXXXXXXXXXXXXSLQDDIIDADYTPPSLASSSXXXXXXXXXXXXXXXXQYHLEMLRLGVRGIITPSSPPLPELQALLDGAKVTRGRVENLVSTLQGGVLHLSQHQKRLLPSTITLEGPPPRFTNTEQEVLNLLSRGMTDQQIAYSLGCTSATVGNAVRGLLKKLEVDLRGELIRVAMDNDLLTE 374
            L AGL+WR DEIYHSQPDFPVLFLATRNE+YAR++E +F  QGYFVRS RTLTRLAKMV++TRPEGILISDHLSTSHI GFL +L+ LPDLWLIP+ I+ D  P+P+ A +     +GT    EG                       L+D                                   L ML LG R +  P     P +QA   GA  TR RVE+LV+TLQG VLH +QHQ+RLLPST+TLEGPPP F+ TEQ VLNLL RGMTD QIAYSLGC+SA VGNAVR LL+KLE+DLRGELIRVA+DNDL+TE
Sbjct:   50 LHAGLTWRADEIYHSQPDFPVLFLATRNESYARDIEGYFSSQGYFVRSCRTLTRLAKMVQSTRPEGILISDHLSTSHIQGFLTSLKRLPDLWLIPVLIICDSTPTPSPAPSK-PIQEGTVRSEEGG---------------------ELEDS----------------------------NDRSRRLAMLELGARAVFPPDRATYPSIQATFTGAAHTRQRVEDLVNTLQGAVLHYAQHQRRLLPSTVTLEGPPPSFSPTEQAVLNLLCRGMTDAQIAYSLGCSSAAVGNAVRSLLEKLEMDLRGELIRVALDNDLVTE 318
[Close]
BLAST of NO13G00760 vs. NCBI_GenBank
Match: EWM21742.1 (two component transcriptional family [Nannochloropsis gaditana])

HSP 1 Score: 328.2 bits (840), Expect = 3.400e-86
Identity = 181/319 (56.74%), Postives = 210/319 (65.83%), Query Frame = 0 
Query:   56 LDAGLSWRTDEIYHSQPDFPVLFLATRNETYAREVERHFGGQGYFVRSSRTLTRLAKMVKTTRPEGILISDHLSTSHILGFLANLRDLPDLWLIPIFIVHD-LPSPTAATAAVGGSDGTAVDGEGSGKQEXXXXXXXXXXXXXXXXXSLQDDIIDADYTPPSLASSSXXXXXXXXXXXXXXXXQYHLEMLRLGVRGIITPSSPPLPELQALLDGAKVTRGRVENLVSTLQGGVLHLSQHQKRLLPSTITLEGPPPRFTNTEQEVLNLLSRGMTDQQIAYSLGCTSATVGNAVRGLLKKLEVDLRGELIRVAMDNDLLTE 374
            L AGL+WR DEIYHSQPDFPVLFLATRNE+YAR++E +F  QGYFVRS RTLTRLAKMV++TRPEGILISDHLSTSHI GFL +L+ LPDLWLIP+ I+ D  P+P+ A +     +GT    EG                       L+D                                   L ML LG R +  P     P +QA   GA  TR RVE+LV+TLQG VLH +QHQ+RLLPST+TLEGPPP F+ TEQ VLNLL RGMTD QIAYSLGC+SA VGNAVR LL+KLE+DLRGELIRVA+DNDL+TE
Sbjct:   50 LHAGLTWRADEIYHSQPDFPVLFLATRNESYARDIEGYFSSQGYFVRSCRTLTRLAKMVQSTRPEGILISDHLSTSHIQGFLTSLKRLPDLWLIPVLIICDSTPTPSPAPSK-PIQEGTVRSEEGG---------------------ELEDS----------------------------NDRSRRLAMLELGARAVFPPDRATYPSIQATFTGAAHTRQRVEDLVNTLQGAVLHYAQHQRRLLPSTVTLEGPPPSFSPTEQAVLNLLCRGMTDAQIAYSLGCSSAAVGNAVRSLLEKLEMDLRGELIRVALDNDLVTE 318
The following BLAST results are available for this feature:
BLAST of NO13G00760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855317.13.400e-8656.74two component transcriptional family [Nannochlorop... [more]
EWM21742.13.400e-8656.74two component transcriptional family [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001824NSK001824Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00760.1NO13G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|116994gene_6936Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100303g9gene8687Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00760.1NO13G00760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00760 ID=NO13G00760|Name=NO13G00760|organism=Nannochloropsis oceanica|type=gene|length=1122bp
ATGTCCTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCT
CCTTTCCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCT
TCCTCCCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACC
ACCACCTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGAT
CTATCACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACG
AGACGTATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTT
GTCCGTTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTAC
GAGGCCAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTT
TGGGTTTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCA
ATTTTCATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGT
TGGAGGAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAG
AGGTTGACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAA
AAGTCCCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCT
CGCTTCCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAAC
AGCAATGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGC
ATCATCACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGA
CGGGGCAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGC
AGGGAGGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCC
ACAATTACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGA
GGTTTTAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACT
CCTTGGGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTG
AAAAAATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGA
TAATGATTTGCTGACTGAATAG
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protein sequence of NO13G00760.1

>NO13G00760.1-protein ID=NO13G00760.1-protein|Name=NO13G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MSSSLCSTPKMLPPFLLLSFILILLLLLPPSLAFLPPVLLCSSSSSTTTT
TTSTSLDAGLSWRTDEIYHSQPDFPVLFLATRNETYAREVERHFGGQGYF
VRSSRTLTRLAKMVKTTRPEGILISDHLSTSHILGFLANLRDLPDLWLIP
IFIVHDLPSPTAATAAVGGSDGTAVDGEGSGKQEVDSSSSKSSRHRIRKK
KSLQDDIIDADYTPPSLASSSSPLSQKDQEQRQQQWRQYHLEMLRLGVRG
IITPSSPPLPELQALLDGAKVTRGRVENLVSTLQGGVLHLSQHQKRLLPS
TITLEGPPPRFTNTEQEVLNLLSRGMTDQQIAYSLGCTSATVGNAVRGLL
KKLEVDLRGELIRVAMDNDLLTE*
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Synonyms
Publications