NO13G00760.1, NO13G00760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00760.1
Unique NameNO13G00760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1122
Alignment locationchr13:253058..254179 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:253058..254179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00760.1 vs.
Match: EWM21742.1 (two component transcriptional family [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 1.400e-44
Identity = 102/173 (58.96%), Postives = 120/173 (69.36%), Query Frame = 0 
Query:  207 IIDADYTPPSLASSSSPL------SQKDQEQRQQQWRQYHLEMLRLGVRGIITPSSPPLPELQALLDGAKVTRGRVENLVSTLQGGVLHLSQHQKRLLPSTITLEGPPPRFTNTEQEVLNLLSRGMTDQQIAYSLGCTSATVGNAVRGLLKKLEVDLRGELIRVAMDNDLLTE 374
            +I  D TP    + S P+      S++  E      R   L ML LG R +  P     P +QA   GA  TR RVE+LV+TLQG VLH +QHQ+RLLPST+TLEGPPP F+ TEQ VLNLL RGMTD QIAYSLGC+SA VGNAVR LL+KLE+DLRGELIRVA+DNDL+TE
Sbjct:  146 LIICDSTPTPSPAPSKPIQEGTVRSEEGGELEDSNDRSRRLAMLELGARAVFPPDRATYPSIQATFTGAAHTRQRVEDLVNTLQGAVLHYAQHQRRLLPSTVTLEGPPPSFSPTEQAVLNLLCRGMTDAQIAYSLGCSSAAVGNAVRSLLEKLEMDLRGELIRVALDNDLVTE 318
The following BLAST results are available for this feature:
BLAST of NO13G00760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21742.11.400e-4458.96two component transcriptional family [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00760NO13G00760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00760.1NO13G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00760.1.cds1NO13G00760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00760.1 ID=NO13G00760.1|Name=NO13G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp
ATGTCCTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCT
CCTTTCCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCT
TCCTCCCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACC
ACCACCTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGAT
CTATCACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACG
AGACGTATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTT
GTCCGTTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTAC
GAGGCCAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTT
TGGGTTTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCA
ATTTTCATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGT
TGGAGGAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAG
AGGTTGACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAA
AAGTCCCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCT
CGCTTCCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAAC
AGCAATGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGC
ATCATCACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGA
CGGGGCAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGC
AGGGAGGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCC
ACAATTACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGA
GGTTTTAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACT
CCTTGGGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTG
AAAAAATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGA
TAATGATTTGCTGACTGAATAG
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protein sequence of NO13G00760.1

>NO13G00760.1-protein ID=NO13G00760.1-protein|Name=NO13G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MSSSLCSTPKMLPPFLLLSFILILLLLLPPSLAFLPPVLLCSSSSSTTTT
TTSTSLDAGLSWRTDEIYHSQPDFPVLFLATRNETYAREVERHFGGQGYF
VRSSRTLTRLAKMVKTTRPEGILISDHLSTSHILGFLANLRDLPDLWLIP
IFIVHDLPSPTAATAAVGGSDGTAVDGEGSGKQEVDSSSSKSSRHRIRKK
KSLQDDIIDADYTPPSLASSSSPLSQKDQEQRQQQWRQYHLEMLRLGVRG
IITPSSPPLPELQALLDGAKVTRGRVENLVSTLQGGVLHLSQHQKRLLPS
TITLEGPPPRFTNTEQEVLNLLSRGMTDQQIAYSLGCTSATVGNAVRGLL
KKLEVDLRGELIRVAMDNDLLTE*
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mRNA from alignment at chr13:253058..254179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00760.1 ID=NO13G00760.1|Name=NO13G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp|location=Sequence derived from alignment at chr13:253058..254179- (Nannochloropsis oceanica)
ATGTCCTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCT
CCTTTCCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCT
TCCTCCCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACC
ACCACCTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGAT
CTATCACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACG
AGACGTATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTT
GTCCGTTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTAC
GAGGCCAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTT
TGGGTTTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCA
ATTTTCATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGT
TGGAGGAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAG
AGGTTGACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAA
AAGTCCCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCT
CGCTTCCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAAC
AGCAATGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGC
ATCATCACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGA
CGGGGCAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGC
AGGGAGGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCC
ACAATTACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGA
GGTTTTAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACT
CCTTGGGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTG
AAAAAATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGA
TAATGATTTGCTGACTGAATAG
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Coding sequence (CDS) from alignment at chr13:253058..254179-

>NO13G00760.1 ID=NO13G00760.1|Name=NO13G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr13:253058..254179- (Nannochloropsis oceanica)
ATGTCCTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCT
CCTTTCCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCT
TCCTCCCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACC
ACCACCTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGAT
CTATCACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACG
AGACGTATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTT
GTCCGTTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTAC
GAGGCCAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTT
TGGGTTTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCA
ATTTTCATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGT
TGGAGGAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAG
AGGTTGACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAA
AAGTCCCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCT
CGCTTCCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAAC
AGCAATGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGC
ATCATCACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGA
CGGGGCAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGC
AGGGAGGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCC
ACAATTACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGA
GGTTTTAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACT
CCTTGGGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTG
AAAAAATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGA
TAATGATTTGCTGACTGAATAG
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Synonyms
Publications