NO13G00730, NO13G00730 (gene) Nannochloropsis oceanica

Overview
NameNO13G00730
Unique NameNO13G00730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length710
Alignment locationchr13:243303..244012 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription and mRNA export factor ENY2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:243303..244012 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000124SAGA complex
GO:0005643nuclear pore
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006406mRNA export from nucleus
GO:0045893positive regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003713transcription coactivator activity
Vocabulary: INTERPRO
TermDefinition
IPR018783TF_ENY2
Homology
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BLAST of NO13G00730 vs. NCBI_GenBank
Match: XP_005855157.1 (enhancer of yellow 2 transcription factor-like protein [Nannochloropsis gaditana CCMP526] >EKU21198.1 enhancer of yellow 2 transcription factor-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.4 bits (176), Expect = 1.300e-9
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0 
Query:   19 INEEQKQXXXXXXXXXXXXXXXXXQFVDSGGKDRLKAVLRERLQGAGWKEEVKELCKEVMRNNCIEGVTVDELVALTMPRAR 101
            + EE++Q                 Q ++SG KDR+KA+LRERLQ  GW+++VKE CKEVMR    E VT+DELV   + +AR
Sbjct:    2 MTEEREQLERQDAADQQQQMAILQQLIESGEKDRIKALLRERLQEWGWQDQVKEFCKEVMRIKGTESVTLDELVEQVLSKAR 83
The following BLAST results are available for this feature:
BLAST of NO13G00730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855157.11.300e-945.12enhancer of yellow 2 transcription factor-like pro... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001826NSK001826Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00730.1NO13G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G00730.2NO13G00730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596856gene_6940Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00730.1NO13G00730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G00730.2NO13G00730.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00730 ID=NO13G00730|Name=NO13G00730|organism=Nannochloropsis oceanica|type=gene|length=710bp
CACAAGACAGACGCTCACAGCCTCACCGTTCACGTCGCCAACAGCACAAC
AATGCCAGCAAACGCCACAGCCACCGATGTTTCCACGGGAAAgtaagtat
ttgtctatccaaatcctgcatcgcatccatctcactcccaacccaccgca
ctcatgcacgcccctaaacatgcacgccacacagCCCCAACCTGCCAATC
AATGAAGAGCAGAAGCAGGTAGAGGAGCAGCAAAGAGCCGCACGGGAGCA
GCAAATCGCCATCCTCCAGCAGTTTGTGGACTCGGGTGGGAAGGACCGCC
TCAAGGCCGTTCTGCGCGAGCGCCTGCAAGGGGCTGGGTGGAAGGAAGAG
GTAAAGGAGCTTTGCAAGGAAGTGATGCGGAATAATTGCATCGAAGGCGT
GACAGTAGACGAGCTAGTGGCCTTGACAATGCCAAGGGCAAGAGgtacga
gagggggggaagggtggttggcaaatatacggaaatggaggggtggtggt
tggtacagaaaggttgcggatagcatgcctaatctcatttctattcatat
ccgcacactgacataatcatagCAACAATACCGGACAACCTACGAGTAGA
AGCGCTCAAAGCCATTCGGGAATCCTTGCGGACTGATGTTGGATGAGCTG
CCATGCCCGTTAGAGAGAAACACACAAGCATTCAATTGTACAGCCAAAAG
AAGAAGCAAA
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protein sequence of NO13G00730.1

>NO13G00730.1-protein ID=NO13G00730.1-protein|Name=NO13G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MPANATATDVSTGNPNLPINEEQKQVEEQQRAAREQQIAILQQFVDSGGK
DRLKAVLRERLQGAGWKEEVKELCKEVMRNNCIEGVTVDELVALTMPRAR
ATIPDNLRVEALKAIRESLRTDVG*
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protein sequence of NO13G00730.2

>NO13G00730.2-protein ID=NO13G00730.2-protein|Name=NO13G00730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MPANATATDVSTGNPNLPINEEQKQVEEQQRAAREQQIAILQQFVDSGGK
DRLKAVLRERLQGAGWKEEVKELCKEVMRNNCIEGVTVDELVALTMPRAR
GTRGGEGWLANIRKWRGGGWYRKVADSMPNLISIHIRTLT*
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Synonyms
Publications