NO13G00730.2, NO13G00730.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00730.2
Unique NameNO13G00730.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length618
Alignment locationchr13:243303..244012 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:243303..244012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00730.2 vs.
Match: XP_005855157.1 (enhancer of yellow 2 transcription factor-like protein [Nannochloropsis gaditana CCMP526]; EKU21198.1 enhancer of yellow 2 transcription factor-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 91.3 bits (225), Expect = 2.600e-15
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 0 
Query:   19 INEEQKQVEEQQRAAREQQIAILQQFVDSGGKDRLKAVLRERLQGAGWKEEVKELCKEVMRNNCIEGVTVDELVALTMPRAR 101
            + EE++Q+E Q  A ++QQ+AILQQ ++SG KDR+KA+LRERLQ  GW+++VKE CKEVMR    E VT+DELV   + +AR
Sbjct:    2 MTEEREQLERQDAADQQQQMAILQQLIESGEKDRIKALLRERLQEWGWQDQVKEFCKEVMRIKGTESVTLDELVEQVLSKAR 83
The following BLAST results are available for this feature:
BLAST of NO13G00730.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855157.12.600e-1556.10enhancer of yellow 2 transcription factor-like pro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00730NO13G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00730.2NO13G00730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00730.2.cds1NO13G00730.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00730.2.cds2NO13G00730.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00730.2 ID=NO13G00730.2|Name=NO13G00730.2|organism=Nannochloropsis oceanica|type=mRNA|length=618bp
CACAAGACAGACGCTCACAGCCTCACCGTTCACGTCGCCAACAGCACAAC
AATGCCAGCAAACGCCACAGCCACCGATGTTTCCACGGGAAACCCCAACC
TGCCAATCAATGAAGAGCAGAAGCAGGTAGAGGAGCAGCAAAGAGCCGCA
CGGGAGCAGCAAATCGCCATCCTCCAGCAGTTTGTGGACTCGGGTGGGAA
GGACCGCCTCAAGGCCGTTCTGCGCGAGCGCCTGCAAGGGGCTGGGTGGA
AGGAAGAGGTAAAGGAGCTTTGCAAGGAAGTGATGCGGAATAATTGCATC
GAAGGCGTGACAGTAGACGAGCTAGTGGCCTTGACAATGCCAAGGGCAAG
AGGTACGAGAGGGGGGGAAGGGTGGTTGGCAAATATACGGAAATGGAGGG
GTGGTGGTTGGTACAGAAAGGTTGCGGATAGCATGCCTAATCTCATTTCT
ATTCATATCCGCACACTGACATAATCATAGCAACAATACCGGACAACCTA
CGAGTAGAAGCGCTCAAAGCCATTCGGGAATCCTTGCGGACTGATGTTGG
ATGAGCTGCCATGCCCGTTAGAGAGAAACACACAAGCATTCAATTGTACA
GCCAAAAGAAGAAGCAAA
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protein sequence of NO13G00730.2

>NO13G00730.2-protein ID=NO13G00730.2-protein|Name=NO13G00730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MPANATATDVSTGNPNLPINEEQKQVEEQQRAAREQQIAILQQFVDSGGK
DRLKAVLRERLQGAGWKEEVKELCKEVMRNNCIEGVTVDELVALTMPRAR
GTRGGEGWLANIRKWRGGGWYRKVADSMPNLISIHIRTLT*
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mRNA from alignment at chr13:243303..244012+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00730.2 ID=NO13G00730.2|Name=NO13G00730.2|organism=Nannochloropsis oceanica|type=mRNA|length=710bp|location=Sequence derived from alignment at chr13:243303..244012+ (Nannochloropsis oceanica)
CACAAGACAGACGCTCACAGCCTCACCGTTCACGTCGCCAACAGCACAAC
AATGCCAGCAAACGCCACAGCCACCGATGTTTCCACGGGAAAGTAAGTAT
TTGTCTATCCAAATCCTGCATCGCATCCATCTCACTCCCAACCCACCGCA
CTCATGCACGCCCCTAAACATGCACGCCACACAGCCCCAACCTGCCAATC
AATGAAGAGCAGAAGCAGGTAGAGGAGCAGCAAAGAGCCGCACGGGAGCA
GCAAATCGCCATCCTCCAGCAGTTTGTGGACTCGGGTGGGAAGGACCGCC
TCAAGGCCGTTCTGCGCGAGCGCCTGCAAGGGGCTGGGTGGAAGGAAGAG
GTAAAGGAGCTTTGCAAGGAAGTGATGCGGAATAATTGCATCGAAGGCGT
GACAGTAGACGAGCTAGTGGCCTTGACAATGCCAAGGGCAAGAGGTACGA
GAGGGGGGGAAGGGTGGTTGGCAAATATACGGAAATGGAGGGGTGGTGGT
TGGTACAGAAAGGTTGCGGATAGCATGCCTAATCTCATTTCTATTCATAT
CCGCACACTGACATAATCATAGCAACAATACCGGACAACCTACGAGTAGA
AGCGCTCAAAGCCATTCGGGAATCCTTGCGGACTGATGTTGGATGAGCTG
CCATGCCCGTTAGAGAGAAACACACAAGCATTCAATTGTACAGCCAAAAG
AAGAAGCAAA
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Coding sequence (CDS) from alignment at chr13:243303..244012+

>NO13G00730.2 ID=NO13G00730.2|Name=NO13G00730.2|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at chr13:243303..244012+ (Nannochloropsis oceanica)
ATGCCAGCAAACGCCACAGCCACCGATGTTTCCACGGGAAACCCCAACCT
GCCAATCAATGAAGAGCAGAAGCAGGTAGAGGAGCAGCAAAGAGCCGCAC
GGGAGCAGCAAATCGCCATCCTCCAGCAGTTTGTGGACTCGGGTGGGAAG
GACCGCCTCAAGGCCGTTCTGCGCGAGCGCCTGCAAGGGGCTGGGTGGAA
GGAAGAGGTAAAGGAGCTTTGCAAGGAAGTGATGCGGAATAATTGCATCG
AAGGCGTGACAGTAGACGAGCTAGTGGCCTTGACAATGCCAAGGGCAAGA
GGTACGAGAGGGGGGGAAGGGTGGTTGGCAAATATACGGAAATGGAGGGG
TGGTGGTTGGTACAGAAAGGTTGCGGATAGCATGCCTAATCTCATTTCTA
TTCATATCCGCACACTGACATAA
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Synonyms
Publications