NO13G00510, NO13G00510 (gene) Nannochloropsis oceanica

Overview
NameNO13G00510
Unique NameNO13G00510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length485
Alignment locationchr13:178042..178526 +

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Properties
Property NameValue
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:178042..178526 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0016740transferase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029040RPABC4/Spt4
IPR006591RNAP_P/RPABC4
Homology
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: XP_005853971.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Nannochloropsis gaditana CCMP526] >EKU22387.1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 109.0 bits (271), Expect = 7.500e-21
Identity = 74/86 (86.05%), Postives = 76/86 (88.37%), Query Frame = 0 
Query:    1 MSSAGGGVYGNYGXXXXXXXXXXXXXXXXXXXXXXARSEVMGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            MS AGGG YG+YG    XXXXXXXXXXXXXXXXXX   E+ GVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR
Sbjct:    2 MSGAGGGPYGHYG----XXXXXXXXXXXXXXXXXXMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 83
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: EWM22887.1 (dna-directed rna polymerases and iii subunit rpabc4 [Nannochloropsis gaditana])

HSP 1 Score: 90.5 bits (223), Expect = 2.800e-15
Identity = 67/79 (84.81%), Postives = 69/79 (87.34%), Query Frame = 0 
Query:    1 MSSAGGGVYGNYGXXXXXXXXXXXXXXXXXXXXXXARSEVMGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 80
            MS AGGG YG+    XXXXXXXXXXXXXXXXXXXX   E+ GVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR
Sbjct:   60 MSGAGGGPYGH----XXXXXXXXXXXXXXXXXXXXMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: CBN79287.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.2 bits (204), Expect = 4.400e-13
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:   42 GVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            GVTYLCGDCG+ N+IK KDPI+CRQC +RIMYK RTKR++QFEAR
Sbjct:   24 GVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: ORX76873.1 (hypothetical protein BCR32DRAFT_329146 [Anaeromyces robustus])

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-11
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 0 
Query:   43 VTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            +TY+CGDCG +N I+ K+PIRCR C HRIMYK RTKR+VQFEAR
Sbjct:   17 ITYICGDCGVENEIRAKEPIRCRDCGHRIMYKKRTKRMVQFEAR 60
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: KIM45987.1 (hypothetical protein M413DRAFT_8014 [Hebeloma cylindrosporum h7])

HSP 1 Score: 77.8 bits (190), Expect = 1.900e-11
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0 
Query:   38 SEVMGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            S  + + YLC DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   84 SRDIAMEYLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 132
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: PBK61601.1 (hypothetical protein ARMSODRAFT_964757 [Armillaria solidipes])

HSP 1 Score: 77.4 bits (189), Expect = 2.400e-11
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0 
Query:   40 VMGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            +  + YLC DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   27 IKDMEYLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 73
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: EMD40565.1 (hypothetical protein CERSUDRAFT_80234 [Gelatoporia subvermispora B])

HSP 1 Score: 76.6 bits (187), Expect = 4.100e-11
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            YLC DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   30 YLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 71
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: KDQ64745.1 (hypothetical protein JAAARDRAFT_28385 [Jaapia argillacea MUCL 33604])

HSP 1 Score: 76.6 bits (187), Expect = 4.100e-11
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            YLC DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   29 YLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 70
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: KII95347.1 (hypothetical protein PLICRDRAFT_48311 [Plicaturopsis crispa FD-325 SS-3])

HSP 1 Score: 76.6 bits (187), Expect = 4.100e-11
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            YLC DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   31 YLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 72
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: OCH88304.1 (hypothetical protein OBBRIDRAFT_836685 [Obba rivulosa])

HSP 1 Score: 76.6 bits (187), Expect = 4.100e-11
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            YLC DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   29 YLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 70
The following BLAST results are available for this feature:
BLAST of NO13G00510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853971.17.500e-2186.05DNA-directed RNA polymerases I, II, and III subuni... [more]
EWM22887.12.800e-1584.81dna-directed rna polymerases and iii subunit rpabc... [more]
CBN79287.14.400e-1377.78conserved unknown protein [Ectocarpus siliculosus][more]
ORX76873.11.100e-1172.73hypothetical protein BCR32DRAFT_329146 [Anaeromyce... [more]
KIM45987.11.900e-1167.35hypothetical protein M413DRAFT_8014 [Hebeloma cyli... [more]
PBK61601.12.400e-1168.09hypothetical protein ARMSODRAFT_964757 [Armillaria... [more]
EMD40565.14.100e-1176.19hypothetical protein CERSUDRAFT_80234 [Gelatoporia... [more]
KDQ64745.14.100e-1176.19hypothetical protein JAAARDRAFT_28385 [Jaapia argi... [more]
KII95347.14.100e-1176.19hypothetical protein PLICRDRAFT_48311 [Plicaturops... [more]
OCH88304.14.100e-1176.19hypothetical protein OBBRIDRAFT_836685 [Obba rivul... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001854NSK001854Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00510.1NO13G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596947gene_6965Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100160g2gene7561Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00510.1NO13G00510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00510 ID=NO13G00510|Name=NO13G00510|organism=Nannochloropsis oceanica|type=gene|length=485bp
ATGTCGAGCGCAGGCGGCGGGGTCTACGGAAACTACGGTGCAGGGGCAGG
TGCGGGAGGCGGCGAGGCGGGTCTTGGCCTTGGGGCTGGGACAGGTGGAG
GCATGGCGCGGAGTGAAGTGATGGGTGTGACTTATTTGTGTGGGGgtacg
tcgtaaagtgcgggtggagggaggcggggaacagggagggaaggtcagag
gtcgccggcgctgaacacagtgtcacagtatagaggcggtgaatagttgg
cctgtgcatgtacgtgctacgtggttgtgtccttgctttgtatttatacg
cgcataactgatattgccctcccctcccctcactcgctccgtccctcccc
cccttctctcatttccaagACTGCGGTGCCCAAAATGTGATCAAGAACAA
AGATCCCATTCGATGCCGGCAATGCAACCACCGTATCATGTACAAGATGC
GAACGAAGCGTGTGGTCCAGTTTGAGGCACGGTAG
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protein sequence of NO13G00510.1

>NO13G00510.1-protein ID=NO13G00510.1-protein|Name=NO13G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MSSAGGGVYGNYGAGAGAGGGEAGLGLGAGTGGGMARSEVMGVTYLCGDC
GAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR*
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Synonyms
Publications