NO13G00510.1, NO13G00510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00510.1
Unique NameNO13G00510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length261
Alignment locationchr13:178042..178526 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:178042..178526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G00510.1 vs.
Match: XP_005853971.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Nannochloropsis gaditana CCMP526]; EKU22387.1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.9 bits (307), Expect = 5.000e-25
Identity = 69/86 (80.23%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    1 MSSAGGGVYGNYGAGAGAGGGEAGLGLGAGTGGGMARSEVMGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            MS AGGG YG+YG+GAG G GE G     G GG MAR E+ GVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR
Sbjct:    2 MSGAGGGPYGHYGSGAGGGVGEGGT---TGVGGAMAR-ELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 83          
The following BLAST results are available for this feature:
BLAST of NO13G00510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853971.15.000e-2580.23DNA-directed RNA polymerases I, II, and III subuni... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00510NO13G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00510.1NO13G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00510.1.cds1NO13G00510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00510.1.cds2NO13G00510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00510.1 ID=NO13G00510.1|Name=NO13G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=261bp
ATGTCGAGCGCAGGCGGCGGGGTCTACGGAAACTACGGTGCAGGGGCAGG
TGCGGGAGGCGGCGAGGCGGGTCTTGGCCTTGGGGCTGGGACAGGTGGAG
GCATGGCGCGGAGTGAAGTGATGGGTGTGACTTATTTGTGTGGGGACTGC
GGTGCCCAAAATGTGATCAAGAACAAAGATCCCATTCGATGCCGGCAATG
CAACCACCGTATCATGTACAAGATGCGAACGAAGCGTGTGGTCCAGTTTG
AGGCACGGTAG
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protein sequence of NO13G00510.1

>NO13G00510.1-protein ID=NO13G00510.1-protein|Name=NO13G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MSSAGGGVYGNYGAGAGAGGGEAGLGLGAGTGGGMARSEVMGVTYLCGDC
GAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR*
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mRNA from alignment at chr13:178042..178526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00510.1 ID=NO13G00510.1|Name=NO13G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=485bp|location=Sequence derived from alignment at chr13:178042..178526+ (Nannochloropsis oceanica)
ATGTCGAGCGCAGGCGGCGGGGTCTACGGAAACTACGGTGCAGGGGCAGG TGCGGGAGGCGGCGAGGCGGGTCTTGGCCTTGGGGCTGGGACAGGTGGAG GCATGGCGCGGAGTGAAGTGATGGGTGTGACTTATTTGTGTGGGGGTACG TCGTAAAGTGCGGGTGGAGGGAGGCGGGGAACAGGGAGGGAAGGTCAGAG GTCGCCGGCGCTGAACACAGTGTCACAGTATAGAGGCGGTGAATAGTTGG CCTGTGCATGTACGTGCTACGTGGTTGTGTCCTTGCTTTGTATTTATACG CGCATAACTGATATTGCCCTCCCCTCCCCTCACTCGCTCCGTCCCTCCCC CCCTTCTCTCATTTCCAAGACTGCGGTGCCCAAAATGTGATCAAGAACAA AGATCCCATTCGATGCCGGCAATGCAACCACCGTATCATGTACAAGATGC GAACGAAGCGTGTGGTCCAGTTTGAGGCACGGTAG
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Coding sequence (CDS) from alignment at chr13:178042..178526+

>NO13G00510.1 ID=NO13G00510.1|Name=NO13G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at chr13:178042..178526+ (Nannochloropsis oceanica)
ATGTCGAGCGCAGGCGGCGGGGTCTACGGAAACTACGGTGCAGGGGCAGG
TGCGGGAGGCGGCGAGGCGGGTCTTGGCCTTGGGGCTGGGACAGGTGGAG
GCATGGCGCGGAGTGAAGTGATGGGTGTGACTTATTTGTGTGGGGACTGC
GGTGCCCAAAATGTGATCAAGAACAAAGATCCCATTCGATGCCGGCAATG
CAACCACCGTATCATGTACAAGATGCGAACGAAGCGTGTGGTCCAGTTTG
AGGCACGGTAG
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Synonyms
Publications