NO13G00310, NO13G00310 (gene) Nannochloropsis oceanica

Overview
NameNO13G00310
Unique NameNO13G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1846
Alignment locationchr13:106202..108047 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:106202..108047 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G00310 vs. NCBI_GenBank
Match: EWM22871.1 (hypothetical protein Naga_100931g3 [Nannochloropsis gaditana])

HSP 1 Score: 105.1 bits (261), Expect = 3.700e-19
Identity = 102/275 (37.09%), Postives = 137/275 (49.82%), Query Frame = 0 
Query:    1 MAYLRVLTYDLDDPLFLRLFETLALTAKQEIELIHVLKRIATPMETLIAQGRAKEAMSKLE---------GXXXXXXXXXXXXXXXXXXXXXXXPSDVGEPGRRIRGDGPTASPSPLPSLPFLLTADPPPFNVSDTLNRTTITGTKTLQERGGH-------PRRVLVTVSTGTQSVGTGDVRFFYSSLLAVPEEEEALKEEVKKAVRIRVLGIEGXXXXXXXXXXXXXXXXXXREGGMSTTINFAPPKSLRKTVLKLTEKMATLCEEGEGGRGEG 260
            M++LR+L +DLDDPLFLRLF++L L + QE+ELIHVLKRI TPMETLIA+GR++EA++ LE          XXXXXXXXXX              +    PG  + G    A  + +P LP    +  P F++ D    +    T +     GH        RRVLVT S+G +    G  RF YSS  A    E+A  EE+++ VR                           E   S ++NF+P  +L+KTV K+T         GEG +G G
Sbjct:    1 MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIARGRSREALAFLEKXXXXXXXXXXXXXXXXXXXVEEEARLSPQTCVAAPFPGPGPSVWGTVQEAGQAAVPRLP----SSSPCFHLRDPTVPSPAALTASPALAQGHASRQDAPARRVLVTFSSG-RCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQVR-------------QWRDSGGGRGGSEGEETYSVSVNFSPSGALKKTVWKVT--------AGEGRKGGG 249
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BLAST of NO13G00310 vs. NCBI_GenBank
Match: XP_005854655.1 (hypothetical protein NGA_0243500, partial [Nannochloropsis gaditana CCMP526] >EKU21700.1 hypothetical protein NGA_0243500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 102.8 bits (255), Expect = 1.900e-18
Identity = 97/258 (37.60%), Postives = 131/258 (50.78%), Query Frame = 0 
Query:    1 MAYLRVLTYDLDDPLFLRLFETLALTAKQEIELIHVLKRIATPMETLIAQGRAKEAMSKLE---------GXXXXXXXXXXXXXXXXXXXXXXXPSDVGEPGRRIRGDGPTASPSPLPSLPFLLTADPPPFNVSDTLNRTTITGTKTLQERGGH-------PRRVLVTVSTGTQSVGTGDVRFFYSSLLAVPEEEEALKEEVKKAVRIRVLGIEGXXXXXXXXXXXXXXXXXXREGGMSTTINFAPPKSLRKTVLKLT 243
            M++LR+L +DLDDPLFLRLF++L L + QE+ELIHVLKRI TPMETLIA+GR++EA++ LE          XXXXXXXXXX              +    PG  + G    A  + +P LP    +  P F++ D    +    T +     GH        RRVLVT S+G +    G  RF YSS  A    E+A  EE+++ VR                           E   S ++NF+P  +L+KTV K+T
Sbjct:    1 MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIARGRSREALAFLEKXXXXXXXXXXXXXXXXXXXVEEEARLSPQTCVAAPFPGPGPSVWGTVQEAGQAAVPRLP----SSSPCFHLRDPTVPSPAALTASPALAQGHASRQDAPARRVLVTFSSG-RCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQVR-------------QWRDSGGGRGGSEGEETYSVSVNFSPSGALKKTVWKVT 240
The following BLAST results are available for this feature:
BLAST of NO13G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22871.13.700e-1937.09hypothetical protein Naga_100931g3 [Nannochloropsi... [more]
XP_005854655.11.900e-1837.60hypothetical protein NGA_0243500, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL133nonsL133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001874NSK001874Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00310.1NO13G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100931g3gene7577Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00310.1NO13G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00310 ID=NO13G00310|Name=NO13G00310|organism=Nannochloropsis oceanica|type=gene|length=1846bp
TGCGGAGAGTGTCTTTCATGCTCTTTTAGTGTCGTTGCGGTTGGGATGTC
CGAATAAGTAAGGGAGGGAGGGAGAGAGGATTCGCGTGAGAACGGATGAG
CCATACCACAAAAAATGTGCCACCATCTCAAAGGCAGAATTTACGCAAGC
AAGTCCCCGTATTAAGTGGGTATTGTGCGTAAGATAAAGTTTAAATGAGG
CCAAGGCCAAGGCGCGCGTGGCTGCATGCGCTAGACATCAGGGCGGTCGA
AGAGGAACCTTTGCGTGGCTTTCGCTCCCCTGTTCACACCACGCCAATTT
TAAGTGCAATTCGACGCGCTTGTCGTCTGTGGCCTTTCCTGTGTGCGCTA
CGTGCCGCGGGTGTGCCCAAAGTGTGTGACACAGTGTGTGTCATGGCCCT
GTTGCTTGCCGGAAAGGCACTACCTTCGCTGACTTCGTTGATGCTTCAAC
ACCGATAAACTCTACATGCCAGCTCCTCCTTCGATGTCTGCTAAAACTTA
TCATGGTTACACAGGGTCATGGCCTACCTCCGTGTCCTAACATACGACCT
CGATGACCCCCTTTTCTTGCGGCTCTTCGAAACATTGGCGCTGACAGCCA
AACAAGAgtgagtacagggagaagggagtgagggagggaggggagggagg
tcaaaagcttccatgattttatgtgtgcggacgtcatgctatgcacggtc
aagtgtcgagctccatcggcacaagccatttatgaaatcctcgcagagga
agcgcccttaaagtgcaggtcgcgtttagtcaagccacccgggtaatccc
ttgcgctgcgtccccgtatggagagctgcatctctttctaatccatctct
gtcttctctatgccggtggtggcttttccttccctcataccccctcccac
atccctgcatctccattttcctccctcctcctctatagGATCGAGCTCAT
CCATGTCCTCAAGCGGATAGCCACGCCCATGGAAACCCTCATCGCGCAAG
GCCGGGCCAAGGAGGCCATGTCCAAACTGGAAGGACGGCAGCAGCAGCAG
CATCAACAACGTCAACAACATCAACAACATGAAGAACGTCAACAACAACG
AATGCCCTCAGACGTCGGAGAGCCAGGACGAAGAATAAGAGGGGACGGGC
CAACGGCATCCCCATCTCCCTTGCCTTCCCTCCCCTTTCTACTCACCGCG
GACCCTCCTCCCTTTAATGTGTCCGACACTTTGAACCGTACGACTATTAC
AGGGACCAAAACGCTGCAGGAGCGGGGGGGGCATCCACGGCGTGTGCTCG
TCACCGTATCCACGGGTACTCAGAGCGTCGGGACGGGCGACGTCCGTTTT
TTCTACTCCTCCCTCCTGGCGGTGCCTGAGGAGGAGGAGGCCTTGAAGGA
GGAGGTGAAGAAGGCAGTGAGAATACGGGTGCTTGGAATAGAAGGAAAAG
AAGGGAAAGGAGGAGGAGGGGAAGGCGAGGGAGATAAGGAGGAGGAGGGA
AGGGAGGGAGGGATGAGTACAACGATTAACTTTGCACCCCCCAAGAGTCT
GAGGAAGACGGTGCTGAAACTAACGGAGAAAATGGCTACCTTGTGCGAGG
AGGGAGAGGGGGGAAGGGGGGAAGGGGAGAGCTTTGATGTTCTGGTAAAC
GTCGTGATGAATGCATCGTTGCCTCGTCCTTCTTTGCCTTCCTTCTCTTC
CTCCCCTCTAACGAAACGGATGGAAGCAGCGGGAACACATAATCCATCGT
AGACATCGTTTTAAAGTTTCTTACGAAACCTGTATATAAGACATGTAGCT
GGTCCCTGAAGGTCTCTCTCAACTGGCGTAGAGGTAAATTAATTCA
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protein sequence of NO13G00310.1

>NO13G00310.1-protein ID=NO13G00310.1-protein|Name=NO13G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAYLRVLTYDLDDPLFLRLFETLALTAKQEIELIHVLKRIATPMETLIAQ
GRAKEAMSKLEGRQQQQHQQRQQHQQHEERQQQRMPSDVGEPGRRIRGDG
PTASPSPLPSLPFLLTADPPPFNVSDTLNRTTITGTKTLQERGGHPRRVL
VTVSTGTQSVGTGDVRFFYSSLLAVPEEEEALKEEVKKAVRIRVLGIEGK
EGKGGGGEGEGDKEEEGREGGMSTTINFAPPKSLRKTVLKLTEKMATLCE
EGEGGRGEGESFDVLVNVVMNASLPRPSLPSFSSSPLTKRMEAAGTHNPS
*
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Synonyms
Publications