NO13G00310.1, NO13G00310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00310.1
Unique NameNO13G00310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1515
Alignment locationchr13:106202..108047 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:106202..108047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G00310.1 vs.
Match: EWM22871.1 (hypothetical protein Naga_100931g3 [Nannochloropsis gaditana])

HSP 1 Score: 119.0 bits (297), Expect = 2.500e-23
Identity = 108/275 (39.27%), Postives = 150/275 (54.55%), Query Frame = 0 
Query:    1 MAYLRVLTYDLDDPLFLRLFETLALTAKQEIELIHVLKRIATPMETLIAQGRAKEAMSKLEGRQQQ----QHQQRQQHQQHEERQQQRMP-----SDVGEPGRRIRGDGPTASPSPLPSLPFLLTADPPPFNVSDTLNRTTITGTKTLQERGGH-------PRRVLVTVSTGTQSVGTGDVRFFYSSLLAVPEEEEALKEEVKKAVRIRVLGIEGKEGKGGGGEGEGDKEEEGREGGMSTTINFAPPKSLRKTVLKLTEKMATLCEEGEGGRGEG 260
            M++LR+L +DLDDPLFLRLF++L L + QE+ELIHVLKRI TPMETLIA+GR++EA++ LE RQQQ    Q QQRQ  Q   E + +  P     +    PG  + G    A  + +P LP    +  P F++ D    +    T +     GH        RRVLVT S+G +    G  RF YSS  A    E+A  EE+++ VR      + ++  GG G  EG++         S ++NF+P  +L+KTV K+T         GEG +G G
Sbjct:    1 MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIARGRSREALAFLEKRQQQRQQLQRQQRQPPQPLVEEEARLSPQTCVAAPFPGPGPSVWGTVQEAGQAAVPRLP----SSSPCFHLRDPTVPSPAALTASPALAQGHASRQDAPARRVLVTFSSG-RCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQVR------QWRDSGGGRGGSEGEET-------YSVSVNFSPSGALKKTVWKVT--------AGEGRKGGG 249
The following BLAST results are available for this feature:
BLAST of NO13G00310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22871.12.500e-2339.27hypothetical protein Naga_100931g3 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00310NO13G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00310.1NO13G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00310.1.cds1NO13G00310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00310.1.cds2NO13G00310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00310.1 ID=NO13G00310.1|Name=NO13G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
TGCGGAGAGTGTCTTTCATGCTCTTTTAGTGTCGTTGCGGTTGGGATGTC
CGAATAAGTAAGGGAGGGAGGGAGAGAGGATTCGCGTGAGAACGGATGAG
CCATACCACAAAAAATGTGCCACCATCTCAAAGGCAGAATTTACGCAAGC
AAGTCCCCGTATTAAGTGGGTATTGTGCGTAAGATAAAGTTTAAATGAGG
CCAAGGCCAAGGCGCGCGTGGCTGCATGCGCTAGACATCAGGGCGGTCGA
AGAGGAACCTTTGCGTGGCTTTCGCTCCCCTGTTCACACCACGCCAATTT
TAAGTGCAATTCGACGCGCTTGTCGTCTGTGGCCTTTCCTGTGTGCGCTA
CGTGCCGCGGGTGTGCCCAAAGTGTGTGACACAGTGTGTGTCATGGCCCT
GTTGCTTGCCGGAAAGGCACTACCTTCGCTGACTTCGTTGATGCTTCAAC
ACCGATAAACTCTACATGCCAGCTCCTCCTTCGATGTCTGCTAAAACTTA
TCATGGTTACACAGGGTCATGGCCTACCTCCGTGTCCTAACATACGACCT
CGATGACCCCCTTTTCTTGCGGCTCTTCGAAACATTGGCGCTGACAGCCA
AACAAGAGATCGAGCTCATCCATGTCCTCAAGCGGATAGCCACGCCCATG
GAAACCCTCATCGCGCAAGGCCGGGCCAAGGAGGCCATGTCCAAACTGGA
AGGACGGCAGCAGCAGCAGCATCAACAACGTCAACAACATCAACAACATG
AAGAACGTCAACAACAACGAATGCCCTCAGACGTCGGAGAGCCAGGACGA
AGAATAAGAGGGGACGGGCCAACGGCATCCCCATCTCCCTTGCCTTCCCT
CCCCTTTCTACTCACCGCGGACCCTCCTCCCTTTAATGTGTCCGACACTT
TGAACCGTACGACTATTACAGGGACCAAAACGCTGCAGGAGCGGGGGGGG
CATCCACGGCGTGTGCTCGTCACCGTATCCACGGGTACTCAGAGCGTCGG
GACGGGCGACGTCCGTTTTTTCTACTCCTCCCTCCTGGCGGTGCCTGAGG
AGGAGGAGGCCTTGAAGGAGGAGGTGAAGAAGGCAGTGAGAATACGGGTG
CTTGGAATAGAAGGAAAAGAAGGGAAAGGAGGAGGAGGGGAAGGCGAGGG
AGATAAGGAGGAGGAGGGAAGGGAGGGAGGGATGAGTACAACGATTAACT
TTGCACCCCCCAAGAGTCTGAGGAAGACGGTGCTGAAACTAACGGAGAAA
ATGGCTACCTTGTGCGAGGAGGGAGAGGGGGGAAGGGGGGAAGGGGAGAG
CTTTGATGTTCTGGTAAACGTCGTGATGAATGCATCGTTGCCTCGTCCTT
CTTTGCCTTCCTTCTCTTCCTCCCCTCTAACGAAACGGATGGAAGCAGCG
GGAACACATAATCCATCGTAGACATCGTTTTAAAGTTTCTTACGAAACCT
GTATATAAGACATGTAGCTGGTCCCTGAAGGTCTCTCTCAACTGGCGTAG
AGGTAAATTAATTCA
back to top

protein sequence of NO13G00310.1

>NO13G00310.1-protein ID=NO13G00310.1-protein|Name=NO13G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAYLRVLTYDLDDPLFLRLFETLALTAKQEIELIHVLKRIATPMETLIAQ
GRAKEAMSKLEGRQQQQHQQRQQHQQHEERQQQRMPSDVGEPGRRIRGDG
PTASPSPLPSLPFLLTADPPPFNVSDTLNRTTITGTKTLQERGGHPRRVL
VTVSTGTQSVGTGDVRFFYSSLLAVPEEEEALKEEVKKAVRIRVLGIEGK
EGKGGGGEGEGDKEEEGREGGMSTTINFAPPKSLRKTVLKLTEKMATLCE
EGEGGRGEGESFDVLVNVVMNASLPRPSLPSFSSSPLTKRMEAAGTHNPS
*
back to top

mRNA from alignment at chr13:106202..108047+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00310.1 ID=NO13G00310.1|Name=NO13G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at chr13:106202..108047+ (Nannochloropsis oceanica)
TGCGGAGAGTGTCTTTCATGCTCTTTTAGTGTCGTTGCGGTTGGGATGTC
CGAATAAGTAAGGGAGGGAGGGAGAGAGGATTCGCGTGAGAACGGATGAG
CCATACCACAAAAAATGTGCCACCATCTCAAAGGCAGAATTTACGCAAGC
AAGTCCCCGTATTAAGTGGGTATTGTGCGTAAGATAAAGTTTAAATGAGG
CCAAGGCCAAGGCGCGCGTGGCTGCATGCGCTAGACATCAGGGCGGTCGA
AGAGGAACCTTTGCGTGGCTTTCGCTCCCCTGTTCACACCACGCCAATTT
TAAGTGCAATTCGACGCGCTTGTCGTCTGTGGCCTTTCCTGTGTGCGCTA
CGTGCCGCGGGTGTGCCCAAAGTGTGTGACACAGTGTGTGTCATGGCCCT
GTTGCTTGCCGGAAAGGCACTACCTTCGCTGACTTCGTTGATGCTTCAAC
ACCGATAAACTCTACATGCCAGCTCCTCCTTCGATGTCTGCTAAAACTTA
TCATGGTTACACAGGGTCATGGCCTACCTCCGTGTCCTAACATACGACCT
CGATGACCCCCTTTTCTTGCGGCTCTTCGAAACATTGGCGCTGACAGCCA
AACAAGAGTGAGTACAGGGAGAAGGGAGTGAGGGAGGGAGGGGAGGGAGG
TCAAAAGCTTCCATGATTTTATGTGTGCGGACGTCATGCTATGCACGGTC
AAGTGTCGAGCTCCATCGGCACAAGCCATTTATGAAATCCTCGCAGAGGA
AGCGCCCTTAAAGTGCAGGTCGCGTTTAGTCAAGCCACCCGGGTAATCCC
TTGCGCTGCGTCCCCGTATGGAGAGCTGCATCTCTTTCTAATCCATCTCT
GTCTTCTCTATGCCGGTGGTGGCTTTTCCTTCCCTCATACCCCCTCCCAC
ATCCCTGCATCTCCATTTTCCTCCCTCCTCCTCTATAGGATCGAGCTCAT
CCATGTCCTCAAGCGGATAGCCACGCCCATGGAAACCCTCATCGCGCAAG
GCCGGGCCAAGGAGGCCATGTCCAAACTGGAAGGACGGCAGCAGCAGCAG
CATCAACAACGTCAACAACATCAACAACATGAAGAACGTCAACAACAACG
AATGCCCTCAGACGTCGGAGAGCCAGGACGAAGAATAAGAGGGGACGGGC
CAACGGCATCCCCATCTCCCTTGCCTTCCCTCCCCTTTCTACTCACCGCG
GACCCTCCTCCCTTTAATGTGTCCGACACTTTGAACCGTACGACTATTAC
AGGGACCAAAACGCTGCAGGAGCGGGGGGGGCATCCACGGCGTGTGCTCG
TCACCGTATCCACGGGTACTCAGAGCGTCGGGACGGGCGACGTCCGTTTT
TTCTACTCCTCCCTCCTGGCGGTGCCTGAGGAGGAGGAGGCCTTGAAGGA
GGAGGTGAAGAAGGCAGTGAGAATACGGGTGCTTGGAATAGAAGGAAAAG
AAGGGAAAGGAGGAGGAGGGGAAGGCGAGGGAGATAAGGAGGAGGAGGGA
AGGGAGGGAGGGATGAGTACAACGATTAACTTTGCACCCCCCAAGAGTCT
GAGGAAGACGGTGCTGAAACTAACGGAGAAAATGGCTACCTTGTGCGAGG
AGGGAGAGGGGGGAAGGGGGGAAGGGGAGAGCTTTGATGTTCTGGTAAAC
GTCGTGATGAATGCATCGTTGCCTCGTCCTTCTTTGCCTTCCTTCTCTTC
CTCCCCTCTAACGAAACGGATGGAAGCAGCGGGAACACATAATCCATCGT
AGACATCGTTTTAAAGTTTCTTACGAAACCTGTATATAAGACATGTAGCT
GGTCCCTGAAGGTCTCTCTCAACTGGCGTAGAGGTAAATTAATTCA
back to top

Coding sequence (CDS) from alignment at chr13:106202..108047+

>NO13G00310.1 ID=NO13G00310.1|Name=NO13G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr13:106202..108047+ (Nannochloropsis oceanica)
ATGGCCTACCTCCGTGTCCTAACATACGACCTCGATGACCCCCTTTTCTT
GCGGCTCTTCGAAACATTGGCGCTGACAGCCAAACAAGAGATCGAGCTCA
TCCATGTCCTCAAGCGGATAGCCACGCCCATGGAAACCCTCATCGCGCAA
GGCCGGGCCAAGGAGGCCATGTCCAAACTGGAAGGACGGCAGCAGCAGCA
GCATCAACAACGTCAACAACATCAACAACATGAAGAACGTCAACAACAAC
GAATGCCCTCAGACGTCGGAGAGCCAGGACGAAGAATAAGAGGGGACGGG
CCAACGGCATCCCCATCTCCCTTGCCTTCCCTCCCCTTTCTACTCACCGC
GGACCCTCCTCCCTTTAATGTGTCCGACACTTTGAACCGTACGACTATTA
CAGGGACCAAAACGCTGCAGGAGCGGGGGGGGCATCCACGGCGTGTGCTC
GTCACCGTATCCACGGGTACTCAGAGCGTCGGGACGGGCGACGTCCGTTT
TTTCTACTCCTCCCTCCTGGCGGTGCCTGAGGAGGAGGAGGCCTTGAAGG
AGGAGGTGAAGAAGGCAGTGAGAATACGGGTGCTTGGAATAGAAGGAAAA
GAAGGGAAAGGAGGAGGAGGGGAAGGCGAGGGAGATAAGGAGGAGGAGGG
AAGGGAGGGAGGGATGAGTACAACGATTAACTTTGCACCCCCCAAGAGTC
TGAGGAAGACGGTGCTGAAACTAACGGAGAAAATGGCTACCTTGTGCGAG
GAGGGAGAGGGGGGAAGGGGGGAAGGGGAGAGCTTTGATGTTCTGGTAAA
CGTCGTGATGAATGCATCGTTGCCTCGTCCTTCTTTGCCTTCCTTCTCTT
CCTCCCCTCTAACGAAACGGATGGAAGCAGCGGGAACACATAATCCATCG
TAG
back to top
Synonyms
Publications