NO13G00050, NO13G00050 (gene) Nannochloropsis oceanica

Overview
NameNO13G00050
Unique NameNO13G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2490
Alignment locationchr13:12925..15414 +

Link to JBrowse

Properties
Property NameValue
DescriptionIntraflagellar transport particle protein ift140
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:12925..15414 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Cellular Component
TermDefinition
GO:0031514motile cilium
Homology
BLAST of NO13G00050 vs. NCBI_GenBank
Match: EWM22867.1 (intraflagellar transport particle protein ift140 [Nannochloropsis gaditana])

HSP 1 Score: 388.7 bits (997), Expect = 4.700e-104
Identity = 220/435 (50.57%), Postives = 276/435 (63.45%), Query Frame = 0
Query:  395 MRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMXXXXXXXXXXXXXXCSXTGXXXXXXXKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVS----XXXXXXXXXXXXXXXXXXXXXXXQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLE----GETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQEERARELLDKAEE 822
            M  FAGL Y++ +  A++ LKAFH+ L +QDWHAAHQ+L+ +  Q+Q                  +          + L+C+WRNMA L L+ R V+VAE CL +MGH+RG+ AVREAVS                           QLGLL+EAAALY +AKRFDLLNRM+QAAG+WE AL+VA+ +DR +LR THF+YAR+LE   EW+KAI+HYEKAGAQAREV RML K GK+ +LE Y+                           LW+WWG+YCESK D++ A EAY  A+DLVALVRLACVAQDV  AEALL+    G   +G+I  R+  +        A+  AASYHLARHYEGAL+D+LPAL HYARAGCF+HC+RLA AHELD DVM +ALQS    LM+ SA+YF    Q ERA+EL+ KA +
Sbjct:    1 MPSFAGLSYENFSLHAKSCLKAFHFQLFSQDWHAAHQSLRIIFPQRQPDSKAGKKCQNEEPNDH-NQQLRKEGNCKQQLLCIWRNMAHLSLRNRRVEVAEHCLSYMGHIRGVHAVREAVSSPSLYPSLPSLTSSTCSTDIPLGMVAIQLGLLQEAAALYIRAKRFDLLNRMYQAAGKWEKALQVAEKDDRLHLRTTHFQYARRLERMSEWDKAIFHYEKAGAQAREVPRMLHKAGKIEDLEKYLS----------RQKSTVADRESGDAKMLWRWWGRYCESKRDVKAAKEAYRKAADLVALVRLACVAQDVGAAEALLDDKDAGALHQGEISWRQASN-------HAMKAAASYHLARHYEGALYDVLPALTHYARAGCFKHCIRLAKAHELDNDVMQYALQSGQADLMQDSAQYFLKLDQSERAQELIGKARK 417          
BLAST of NO13G00050 vs. NCBI_GenBank
Match: XP_009036412.1 (hypothetical protein AURANDRAFT_71429 [Aureococcus anophagefferens] >EGB09316.1 hypothetical protein AURANDRAFT_71429 [Aureococcus anophagefferens])

HSP 1 Score: 272.3 bits (695), Expect = 4.900e-69
Identity = 249/877 (28.39%), Postives = 366/877 (41.73%), Query Frame = 0
Query:   50 LVELSLDQVFLTGKNTAGPGATHCVEGLKIQDDMLAVWSLHDVRVYRFYGSTTSPSLVASLTVPKPIAALALHGSVLFMALAGENKVDIYRDLLARRAMKGEAAAESRPCSAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGMPQQWSSFGHLS--------LPEEKEE--------EKEGDEGVKKGMTLTSIHLNADATRVSFVLSSIPS---------------------------------FSPLPARLCIYDVDRDVAHAVSCLTTAAASPTTHMWDAEDPKFLVC-------IYT--TNTFTSPIVNARDTSKK----------------KTETKK--------KEGNEDAG---VVITLLVSPDAAKVTCLETSPLSPPLGDLLGVQAPHFYF--ISSSPNLSTSNIPPSSL--------------MLKRTMRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMXXXXXXXXXXXXXXCSXTGXXXXXXXKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSXXXXXXXXXXXXXXXXXXXXXXXQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETA-EALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQEERARELLDKAEEKVK 825
            +++LS D V +  +N A    T     L I+   + VW+  + RVY +         + +   P    A+AL    +F   A  N V++         ++G    +      + FS  EG P  LDV G+ LAVATD  ++K+F + +   P+Q  S GH          LP   +E        +    E   +G  + SI  NAD TRVS +   + S                                      +RL +YD +RD+  +          P +H WD  +PK L C       ++T  TN+  +  +   +TSKK                  ET+         ++  E+AG    V TL V+ +   +   +T PL PPL  LLGVQ P  +F     +P L   +     +              +  R MRDF GL  D   +  ++AL  F ++L   +   AH+A++ +                                       VW NMA +C++T+ +DVAE+CLGHMGH RG  AVR   +                       QLGL  +AA LY + +RFDLLN ++QAAG+WE AL  A   DR +LR TH  YAR LE    ++ A  H+E A    REV RML+  G+ A LE YV                           L +WW  YCES G +  A   YE+A D  +LVR+AC + +   A E + E  +T G                       +YHLARH EG   DI  A+ ++A++GC+ H +RLA  ++LD D++ F++++    L    A YF  +G+ E+A +L  K  E  K
Sbjct:  753 VIQLSTDTVRVERQNGASVLLT---TDLSIRGLAVVVWNGQEARVYEWSDEMGDAKPIETARFPTTARAIALRDETIFR--ASNNLVELCN-------LQGIVRQK------ITFSEGEGSPTHLDVNGDYLAVATDTGLIKIFQVTRR-EPKQLGSPGHFHLWAQAQNFLPSNTDESVHPPGSSKGRSTEESARGHAIRSIRCNADGTRVSILADHVCSSEVDNEVCSTREGALRELTLCVSVSKVHGVSVRIREPDSRLHVYDSERDIVDSHD-FVDVRHYPVSHYWDPLEPKLLACETRRMRILHTSITNSNGNLRLAEHETSKKYFPLGLHEGKISTPSDSAETRSSALQRKLARKVTEEAGPLMEVTTLFVTAEYG-ILLQDTFPLEPPLEALLGVQVPRLFFTRCGGAPTLEAGDADAEDMNVNTSGCEAGGNVGLCGRVMRDFVGL--DDADARTRSALLDFSFYLTVGNMDEAHRAVRLIKSPS-----------------------------------VWENMAHMCVKTKRLDVAEVCLGHMGHARGAAAVRATKN---------DVIELEARVASVAVQLGLRNDAARLYRECRRFDLLNELYQAAGEWELALDTAAHSDRIHLRSTHHRYARHLEALGSYDGAARHFELADTHRREVPRMLVARGEQAALEHYVMRAND--------------------AELLKWWAGYCESLGHLDSAQHCYESAGDHYSLVRVACFSNETNRASEIVHESRSTAG-----------------------AYHLARHLEGR-GDINEAIQYFAKSGCYNHAIRLARQYQLDTDLLQFSIKA-RPSLQVDCANYFEQKGEFEKAVQLYQKGGELAK 1517          
BLAST of NO13G00050 vs. NCBI_GenBank
Match: XP_005855058.1 (intraflagellar transport 140-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU21303.1 intraflagellar transport 140-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 268.1 bits (684), Expect = 9.200e-68
Identity = 147/263 (55.89%), Postives = 180/263 (68.44%), Query Frame = 0
Query:  563 QAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLE----GETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQEERARELLDKAEE 822
            QAAG+WE AL+VA+ +DR +LR THF+YAR+LE   EW+KAI+HYEKAGAQAREV RML K GK+ +LE Y+                           LW+WWG+YCESK D++ A EAY  A+DLVALVRLACVAQDV  AEALL+    G   +G+I  R+  +        A+  AASYHLARHYEGAL+D+LPAL HYARAGCF+HC+RLA AHELD DVM +ALQS    LM+ SA+YF    Q ERA+EL+ KA +
Sbjct:    1 QAAGKWEKALQVAEKDDRLHLRTTHFQYARRLERMSEWDKAIFHYEKAGAQAREVPRMLHKAGKIEDLEKYLS----------RQKSTVADRESGDAKMLWRWWGRYCESKRDVKAAKEAYRKAADLVALVRLACVAQDVGAAEALLDDKDAGGLHQGEISWRQASN-------HAMKAAASYHLARHYEGALYDVLPALTHYARAGCFKHCIRLAKAHELDNDVMQYALQSGQADLMQDSAQYFLKLDQSERAQELIGKARK 246          
BLAST of NO13G00050 vs. NCBI_GenBank
Match: XP_009039874.1 (hypothetical protein AURANDRAFT_30803 [Aureococcus anophagefferens] >EGB05492.1 hypothetical protein AURANDRAFT_30803 [Aureococcus anophagefferens])

HSP 1 Score: 261.5 bits (667), Expect = 8.600e-66
Identity = 234/802 (29.18%), Postives = 350/802 (43.64%), Query Frame = 0
Query:   50 LVELSLDQVFLTGKNTAGPGATHCVEGLKIQDDMLAVWSLHDVRVYRFYGSTTSPSLVASLTVPKPIAALALHGSVLFMALAGENKVDIYRDLLARRAMKGEAAAESRPCSAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGMPQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSSIPSFSPLPARLC------IYDVDRDV-AHAVSCLTTAAASPTTHMWDAEDPKFLVCIYTTNTFTSPIVNARDTSKKKTETKKKEGNEDAGVVI---TLLVSPDAAKVTCLETSPLSPPLGDLLGVQAPHFYF--ISSSPNLSTSNI-------------PPSSL-MLKRTMRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMXXXXXXXXXXXXXXCSXTGXXXXXXXKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSXXXXXXXXXXXXXXXXXXXXXXXQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDV-ETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQEERARELLDKAEEKVK 825
            +++LS D V +  +N A    T     L I+   + VW+  + RVY +         + +   P    A+AL    LF   A  N V++         ++G    +      + FS  EG P  LDV G+ LAVATD  ++K++ + +   P+Q  S G LS  E             +G  + SI  NAD TRVS +   + S S +   +C      + ++++ V    VS       S      D+   K+          + P  +A   S        ++  E+AG ++   TL V+ +   +   +T PL PPL  LLGVQ P  +F     +P L   +              P  ++ +  R MRDF GL  D   +  ++AL  F ++L   +   AH+A++ +                                       VW NMA +C++T+ +DVAE+CLGHMGH RG  AVR   +                       QLGL  +AA LY + +RFDLLN ++QAAG+WE AL  A   DR +LR TH  YAR LE    ++ A  H+E A    REV R+L+  G+ A LE YV                           L +WW  YCES G +  A   YE+A D  +LVR+AC + +    AE + E  +T G                       +YHLARH EG   DI  A+ ++A++GC+ H +RLA  ++LD D++ F++++    L    A YF  +G+ E+A +L  K  E  K
Sbjct:  411 VIQLSTDTVRVERQNGASVLLT---TDLSIRGLAVVVWNGQEARVYEWSDEMGDAKPMETARFPTTARAIALREETLFR--ASNNLVELCN-------LQGIVRQK------ITFSEGEGSPTHLDVNGDYLAVATDTGLIKIYQVTRR-EPKQLGSPG-LSAEES-----------ARGHAIRSIRCNADGTRVSILADHVRS-SEVDNEVCRTGEGALRELEKLVWTLCVSVSKVHGVSVRIREPDSRLHKYFPLCLHEGKISGPNDSAETRSSVLQRKLARKVTEEAGPIMEVTTLFVTAEYG-ILLQDTFPLEPPLEALLGVQVPRLFFTRCGGAPTLEAGDADAEEGNVNKNIGEPADNVGLCGRVMRDFVGL--DDADARTRSALLDFSFYLTVGNMDEAHRAVRLIKSPS-----------------------------------VWENMAHMCVKTKRLDVAEVCLGHMGHARGAAAVRATKN---------DVIELEARVASVAVQLGLRNDAARLYRECRRFDLLNELYQAAGEWELALDTAAHSDRIHLRSTHHRYARHLEALGSYDGAARHFELADTHRREVPRVLVARGEQAALEHYVMRAND--------------------AELLKWWAGYCESLGHLDSAQHCYESAGDHYSLVRVACFSNETNRAAEIVHESRSTAG-----------------------AYHLARHLEGR-GDINEAIQYFAKSGCYNHAIRLARQYQLDTDLLQFSIKA-RPSLQVDCANYFEQKGEFEKAVQLYQKGGELAK 1088          
BLAST of NO13G00050 vs. NCBI_GenBank
Match: XP_007423902.1 (PREDICTED: intraflagellar transport protein 140 homolog [Python bivittatus])

HSP 1 Score: 252.3 bits (643), Expect = 5.200e-63
Identity = 216/780 (27.69%), Postives = 335/780 (42.95%), Query Frame = 0
Query:   74 VEGLKIQDDMLAVWSLHDVRVYRFYGSTTSPSLVASLTVPKPIAALALHGSVLFMALAGENKVDIYRDLLARRAMKGEAAAESRPCSAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGMPQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSSIPSFSPLPARLCIYDVDRDVA-----------HAVSCLTTAAAS---------------PTTHMWDAEDPKFLVCIYTTNTFTSPIVNARDTSKKKTETKKKEGNED-AGVVITLLVSPDAAKVTCLETSPLSPPLGDLLGVQAPHFYFISS-----SPNLSTSNIPPSSLMLKRTMRDFAGL-EYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMXXXXXXXXXXXXXXCSXTGXXXXXXXKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSXXXXXXXXXXXXXXXXXXXXXXXQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQE-ERARELLDKA 820
            V G+    + +A W+   V ++    +T   S   S     P+  LA+H   L+      N+V +       R  +G           + FS  EG P FLDV GN L V TD    K+F L +       SS     L             +   + + S+  NA   +VS +LS   +   L  R+C YD++ DV             A   L+    +               PT+H WD  +P+  +C     T   P   + D        KK+E  E+   V+I    S +   +   ++ PL      LLG++ PH+YF           +    +P   ++ +R MRDF GL E D +T     A+  F ++L   D   A +++K +  +                                    VW NMAR+C++T+ +DVA++CLG+MGH RG  A+REA                         QLG+L++A  LY Q KR+DLLN+ +QA+ QW+ A+ +A+++DR +LR T++ YA+ LE   E   AI +YEK+     EV RML +   +  LE YV                           LW+WW +Y E + D+  A + YE A D  ++VR+ C   +++ A                       ++  +  N AASYH+AR YE +  DI  A+  Y RA  F + +RL   ++LD  +M+ AL S  E ++ ++ARY+ G+G++ +RA  L  KA
Sbjct:  446 VNGVCATKEAVAFWNGKQVSIFELSAATLRNS--GSFLCESPV--LAMHEENLY--TVEPNRVQV-------RTWQGTVK------QLLSFSESEGNPCFLDVCGNYLTVGTDLSHFKIFDLSRREAKVHCSSKALADL-------------IPGALGIASVKCNASGNKVSILLSK--ADGSLDPRICFYDIETDVVTLFDFESGRQKEAKEVLSFGQEAEGKNISVYPELCDRIPTSHFWDQNEPRLFIC----ETVLDPNQQSLD--------KKQESLENLMNVLIVSFFSTEEHGLLLQDSFPLPSTYQSLLGMEVPHYYFAKKPEAERKDEVEPGIVPQYQMVARRPMRDFIGLEECDKMTCE---AMLNFSFYLTIGDMDEAFKSIKLIKSE-----------------------------------AVWENMARMCVKTQRLDVAKVCLGNMGHARGAKALREA----------EQEPEQEARVAMLAIQLGMLEDAEQLYKQCKRYDLLNKFYQASDQWQKAIEIAESQDRVHLRTTYYNYAKHLEAIAERNLAITYYEKSDTHKFEVPRMLSE--DLQALESYVNRMKD--------------------KGLWKWWAQYLEGQADLEAAFKYYELAQDYFSMVRIHCFLGNIQKA----------------------AEIANATGNWAASYHVARQYE-SREDIKQAVHFYTRAQAFNNAIRLCKENQLDDQLMNLALLSSPEDMI-EAARYYEGKGEQMDRAVMLYHKA 1085          
BLAST of NO13G00050 vs. NCBI_GenBank
Match: OQR87348.1 (Intraflagellar Transport protein [Achlya hypogyna])

HSP 1 Score: 251.1 bits (640), Expect = 1.200e-62
Identity = 190/671 (28.32%), Postives = 302/671 (45.01%), Query Frame = 0
Query:  160 SAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGMPQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSSIPSFSPL---PARLCIYDVDRDVAHAVSCLTTAAASPTTHMWDAEDPKFLVCIYTTNTFTSPIVNARDTSKKKTETKKKEGN--------EDAGVVITLLVSPDAAKVTCLETSPLSPPLGDLLGVQAPHFYFISSSPNLSTSNIP-PSSLMLKRTMRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMXXXXXXXXXXXXXXCSXTGXXXXXXXKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSXXXXXXXXXXXXXXXXXXXXXXXQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQEERARELLDK 819
            + + F+  EG P  L V    LAV TD  VL++F L +   P+ + S G++          +G  G+ +  TL S+ +N D TR++F++ ++     +     ++ +++ D +V  +  C       P  H WD ++P+ L C     TF +   +A+ T+ +     K +G+          A   I +L + +   +   +   L      LLG+  P  Y  S+           P +L+  + MRDF GL  D +    + AL  F Y +   +   A++++K +                                       VW NMA +C++T+ +DVA++CLGHMGH RG  AV  A S                       QLGL  EAA LY +A RFDLLN+++QAAG W  A+ VA   DR +L+ THF YA+ LE     ++A+ H+E AG  A+++ RML  +GK+  L+ Y                           AL  WW +Y ES  +   A   Y  A D+++LVR+ C  +D + A  ++                       +  NRAA+YHLAR +E A  ++  A+  YA +G + H +RL+  H LDGD+M +AL S    ++ + A+YF  + + E+A  L  K
Sbjct:  477 NTLSFTEAEGKPFLLHVNNKFLAVGTDTGVLRVFDLSRR-EPKAFGSMGNI---------MKGLSGMNEKSTLHSLSVNCDGTRIAFLVDAVEGTMKVRIPHTKVYLFNTDLNVFQSYDC--GPVRHPVAHFWDPQEPRLLAC----ETFHAKHDDAKSTTTELMAAAKADGDGYDATRLASQAEKEILILFASNERGLLMQDNFDLDVKYSALLGMHVPRLYLGSNQDARDAKEADGPVALLRSKIMRDFVGL--DRVDEPTRQALIDFSYFMTIGNMDEAYRSVKLI-----------------------------------QNTSVWENMAHMCIKTKRLDVAQVCLGHMGHARGAAAVDAAAS---------PGVAVEVPIAMVAIQLGLRDEAARLYKEAGRFDLLNKLYQAAGFWAKAIEVAAKRDRIHLKSTHFAYAKHLEEEGNLKEAMRHFELAGTAAKDIPRMLFSLGKLEMLDSYASKTDD--------------------PALLLWWAQYQESNHEFDAAAVCYRRAKDILSLVRVLCFKKDFDAAAQVI----------------------ANTGNRAAAYHLARQFE-AHDEVGRAIQFYATSGSYGHAIRLSREHNLDGDLMQYALLSKPGPML-ECAQYFEAKREFEKAVALYHK 1041          
BLAST of NO13G00050 vs. NCBI_GenBank
Match: XP_012208438.1 (hypothetical protein SPRG_14091 [Saprolegnia parasitica CBS 223.65] >KDO20860.1 hypothetical protein SPRG_14091 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 244.6 bits (623), Expect = 1.100e-60
Identity = 189/670 (28.21%), Postives = 297/670 (44.33%), Query Frame = 0
Query:  164 FSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGMPQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSSIPSFSPL---PARLCIYDVDRDVAHAVSCLTTAAASPTTHMWDAEDPKFLVC----IYTTNTFTSPIVNARDTSKKKTETKKKEGNEDAGVV-------ITLLVSPDAAKVTCLETSPLSPPLGDLLGVQAPHFYFISSSPNLSTSNIP-PSSLMLKRTMRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMXXXXXXXXXXXXXXCSXTGXXXXXXXKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSXXXXXXXXXXXXXXXXXXXXXXXQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQEERARELLDK 819
            F+  EG P  L V    LAV TD  ++++F L +  +   + S G++          +G  G+ +   L S+ +N D TRV F++  +     +     ++ +++ D +V  +  C       P  H WD ++P+ L C             PI +  D +  K +    +G  DA  +       I +L + +   +   +   L      LLG+  P  Y  S+  +    +   P +L+  R MRDF GL  D +    + AL  F Y +   +   A++++K +                                       VW NMA +C++T+ +DVA++CLGHMGH RG  AV  A                         QLGLL +AA LY ++ RFDLLN+++QAAG W  A+ VA   DR +L+ THF YA+ LE     + A+ H+E AG  A+++ RML  +GK+  L+ Y                           AL  WW +Y ES  +   A   Y  A D ++LVR+ C  +D + A          G+I+             +  NRAA+YHLAR +E A  ++  A+  YA +G + H +RL+  H LDGD+M +AL S    ++ + A+YF  +G+ E+A  L  K
Sbjct:  484 FTGAEGKPTLLHVNNKFLAVGTDTGLIRVFDLSRKNL-DAFGSMGNM---------MKGLPGMSENSMLHSLSVNCDGTRVIFLVDGVEGTLRVRIPHTKVYLFNTDLNVFQSFDC--GPVRYPVAHFWDPQEPRLLACETFHAKLDEQSAKPISSRDDVAPAKND---GDGGADATRLPSSAEKEILILFASNERGLLMQDNFDLDAKYSALLGMHVPRLYLSSNQDSRDAKDADGPVALLRSRIMRDFVGL--DRVDEPTRQALIDFSYFMTVGNMDEAYRSVKLI-----------------------------------QNASVWENMAHMCVKTKRLDVAQVCLGHMGHARGAAAVDAAA---------RPMAPVEVPIAMVAIQLGLLDDAARLYKESNRFDLLNKLYQAAGFWSKAIEVANKRDRIHLKSTHFAYAKHLEDEGNLKDAMRHFELAGTAAKDIPRMLFGLGKLEMLDTYASKTDD--------------------PALLLWWAQYQESNHEFDAAAVCYRRAKDYLSLVRVLCFKKDFDAA----------GQIV------------ANTNNRAAAYHLARQFE-AHDEVGKAIQFYALSGSYGHAIRLSREHNLDGDLMQYALLSKPGPML-ECAQYFEAKGEHEKAVALYHK 1048          
BLAST of NO13G00050 vs. NCBI_GenBank
Match: XP_017923067.1 (PREDICTED: intraflagellar transport protein 140 homolog [Manacus vitellinus])

HSP 1 Score: 243.4 bits (620), Expect = 2.400e-60
Identity = 221/791 (27.94%), Postives = 334/791 (42.23%), Query Frame = 0
Query:   65 TAGPGATHC------VEGLKIQDDMLAVWSLHDVRVYRFYGSTTSPSLVASLTVPKPIAALALHGSVLFMALAGENKVDIYRDLLARRAMKGEAAAESRPCSAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGMPQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSSIPSFSPLPARLCIYDVDRDVA------------------------HAVSCLTTAAASPTTHMWDAEDPKFLVCIYTTNTFTSPIVNARDTSKKKTETKKKEGNEDAGVVITLLVSPDAAKVTCLETSPLSPPLGDLLGVQAPHFYFISSSPNLSTSNIPPSSLML-----KRTMRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMXXXXXXXXXXXXXXCSXTGXXXXXXXKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSXXXXXXXXXXXXXXXXXXXXXXXQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQE-ERARELLDKA 820
            T   GATH       V G+    D L  W+   V V+   G T   +   S     P+  L++HG  L+        V+ YR  +  R  +G           + FS  EG P  LDV GN LAV TD   LK+F L +       +S             K+  + +     + S+  NA+ ++VS ++S   +   + +++C YDV+ D                            +      +  P  H WD  +P+  VC         P +  + + +KK +T   EG  D  V I    + +   +   ++ PL      LLG++ PH+YF     +       P S M+     +R MRDF GL       + Q A+  F ++L   D   A +++K +  +                                    VW +MAR+C++T+ +DVA++CLGHMGH RG  A+REA                         QLG+L++A  LY    RFDLLN+ +QA+ QW+ AL  A+ +DR +LR TH  YA+ LE A E   A+ HYEK+     EV RML +   +  LE YV                          +LW+WW +Y ES+ D+  A + Y  A D  +LVR+ C   +++ A                       ++     N AASYHLAR YE +  DI  A+  Y RA  F + +RL  A+ LD  +M+ AL S  E ++ ++A Y+  +G++ +RA  L  KA
Sbjct:  432 TFSTGATHSLRVDMNVNGVFATKDALVFWNGKQVTVFECSGDTFRSA--GSFLCDSPV--LSVHGESLY-------TVEPYR--VQVRTWQGTVK------QLLVFSEAEGSPCLLDVCGNFLAVGTDLAHLKIFDLSRREAKVHCNS-------------KDLSQLLPDRGGIASVKCNANGSKVSILVSK--ADGNIDSKICFYDVEMDKVTLFDFNAEQGDGGEKLSAGQGIGKSVLEYPELHSHIPVCHFWDQSEPRLFVC------EAIPEMGLQSSDQKKNQT---EGTMD--VWIISFFNTEEHGLLLQDSFPLPSSYEVLLGIEVPHYYFAKKLGDSEKGAPEPGSAMVSQMVARRPMRDFIGL--GDCDKTTQDAMLNFSFYLTAGDMDEAFKSIKLIKSE-----------------------------------AVWESMARMCVRTQRLDVAKICLGHMGHARGAKALREA----------EQEPEPEARVAVLAIQLGMLEDAERLYKACGRFDLLNKFYQASNQWQKALETAEAQDRVHLRTTHCNYAKHLEAAGEQSLALAHYEKSDTHRFEVPRMLSE--DLQALENYVNKMKD--------------------KSLWKWWAQYLESQSDLESALQYYALAQDYFSLVRVHCFQGNIQKA----------------------AEIANKTGNWAASYHLARQYE-SQEDIKQAVHFYTRAQAFNNAIRLCKANNLDDQLMNLALLSSPEDMI-EAACYYEEKGEQMDRAVMLYHKA 1084          
BLAST of NO13G00050 vs. NCBI_GenBank
Match: XP_017664320.1 (PREDICTED: intraflagellar transport protein 140 homolog isoform X2 [Lepidothrix coronata])

HSP 1 Score: 242.7 bits (618), Expect = 4.100e-60
Identity = 222/793 (27.99%), Postives = 337/793 (42.50%), Query Frame = 0
Query:   65 TAGPGATHC------VEGLKIQDDMLAVWSLHDVRVYRFYGSTTSPSLVASLTVPKPIAALALHGSVLFMALAGENKVDIYRDLLARRAMKGEAAAESRPCSAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGMPQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSSIPSFSPLPARLCIYDVDRDVA------------------------HAVSCLTTAAASPTTHMWDAEDPKFLVCIYTTNTFTSPIVNARDTSKKKTETKKKEGNEDAGVVITLLVSPDAAKVTCLETSPLSPPLGDLLGVQAPHFYFI-------SSSPNLSTSNIPPSSLMLKRTMRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMXXXXXXXXXXXXXXCSXTGXXXXXXXKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSXXXXXXXXXXXXXXXXXXXXXXXQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQE-ERARELLDKA 820
            T   GATH       V G+    D L  W+   V V+   G T   +   S     P+  L++HG  L+        V+ YR  +  R  +G           + FS  EG P  LDV GN LAV TD   LK+F L +       +S       ++  +   G  G+       S+  NA+ ++VS ++S   +   + +++C YDV+ D                            +      +  P  H WD  +P+  VC         P    + + +KK +T   EG  D  V I    S +   +   ++ PL      LLG++ PH+YF          +P   ++ +  S ++ +R MRDF GL       + Q A+  F ++L   D   A +++K +  +                                    VW +MAR+C++T+ +DVA++CLGHMGH RG  A+REA                         QLG+L++A  LY    RFDLLN+ +QA+ QW+ AL  A+ +DR +LR TH  YA+ LE A E   A+ HYEK+     EV RML +   +  LE YV                          +LW+WW +Y ES+ D+  A + Y  A D  +LVR+ C   +++ A                       ++     N AASYHLAR YE +  DI  A+  Y RA  F + +RL  A+ LD  +M+ AL S  E ++ ++A Y+  +G++ +RA  L  KA
Sbjct:  432 TFSTGATHSLRVDMNVNGVFATKDALVFWNGKQVTVFECSGDTFRSA--GSFLCDSPV--LSVHGESLY-------TVEPYR--VQVRTWQGTVK------QLLVFSEAEGSPCLLDVCGNFLAVGTDLAHLKIFDLSRREAKVHCNS-------KDLSQLLPGRGGI------ASVKCNANGSKVSILVSK--ADGNIDSKICFYDVEMDKVTLFDFNAEQGDGGEKLSAGQGIGKSVLEYPELRSHIPVCHFWDQSEPRLFVC------EAIPETGLQSSDQKKNQT---EGTMD--VWIISFFSTEEHGLLLQDSFPLPSSYEVLLGIEVPHYYFAKKLGDSEKGAPEPGSATV--SQMVARRPMRDFIGL--GDCDKTTQDAMLNFSFYLTAGDMDEAFKSIKLIKSE-----------------------------------AVWESMARMCVRTQRLDVAKICLGHMGHARGAKALREA----------EQEPEPEARVAVLAIQLGMLEDAERLYKACGRFDLLNKFYQASNQWQKALETAEAQDRVHLRTTHCNYAKHLEAAGEQSLALAHYEKSDTHRFEVPRMLSE--DLQALENYVNKMKD--------------------KSLWKWWAQYLESQSDLESALQYYALAQDYFSLVRVHCFQGNIQKA----------------------AEIANKTGNWAASYHLARQYE-SQEDIKQAVHFYTRAQAFNNAIRLCKANNLDDQLMNLALLSSPEDMI-EAACYYEEKGEQMDRAVMLYHKA 1084          
BLAST of NO13G00050 vs. NCBI_GenBank
Match: GBG32279.1 (Intraflagellar transport protein 140-like [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 242.7 bits (618), Expect = 4.100e-60
Identity = 228/816 (27.94%), Postives = 345/816 (42.28%), Query Frame = 0
Query:   74 VEGLKIQDDMLAVWSLHDVRVYRFYGSTTSPSLVASLTVPKPIAALALHGSVLFMALAGENKVDIYRDLLARRAMKGEAAAESRPCSAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGMPQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSSIPSFSPL---PARLCIYDVDRDVAHAVSCLTTAAASPTTHMWDAEDPKFLVC-----IYTTNTFTSP-----------------IVNARD--------------------------------------------TSKKKTETKKKEGNEDAG--VVITLLVSPDAAKVTCLETSPLSPPLGDLLGVQAPHFYFISSSPNLSTSNIPPSSLMLKRTMRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMXXXXXXXXXXXXXXCSXTGXXXXXXXKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSXXXXXXXXXXXXXXXXXXXXXXXQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKXXXXXXXXXXXXXXXXXXXXXXXRTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQEERARELLDK 819
            ++GL + D    VWS     VY F  +      +AS T                MAL GE  +      L+   ++G + AE      V FS  EG P F+ + G  LAVAT + +LK+F + +            +S    K  +  G + V  G  + SI  NAD TRVS VL  I     L     R+ +++++RD   A     T    P +H WD ++PK L C       + N+F                    IV   D                                              K +T  + + G+ +     V+TL  + +   V   +  PL   L  LLG++ P  +FIS         +P    +  RTMRDF GL+   +    + AL  F Y+L   +   A++A+K +                                     V VW NMA +C++TR +DVAE+C+G+MGHVRG  A+RE+                         QLGLL++A  LY +  R+DLLN+M + +GQW  +L VA + DR +LR +HFEY R LE   +++ AI +YE +G   ++V RML +  ++ ELE Y++                          L +WWG YCES G+   +   Y+ ASD ++LVR+ CV ++ + A                       ++ +++ N AASYHLAR  E    +I  A+  Y+RAG + H +RLA    L+ D+++ AL++ S+  M ++ARY   +G  E A  L  K
Sbjct:  479 IKGLDVNDSHALVWSQRKAEVYAFQDNRM--ERIASFTTRAEA-----------MALYGETILQTEGSHLSVCNLQGVSRAE------VSFSEHEGEPRFMHINGKYLAVATHKGMLKVFDVSRREPRPVGGGAWFVSSARSKGGKPLGKQ-VPIG-EIRSIRCNADGTRVS-VLCDIVRGQHLREPDTRIHVWNLNRDEFQAYEFGPT--RYPVSHFWDGQEPKLLACEAKRLRKSVNSFEEASDAKVKSSKELKGSRLRIVGDEDEDLGDLRRGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLQKMRTALRARNGSAEIAEVEVVTLFATEERVGVMMQDAFPLEGNLEALLGMRVPRLFFISKPS--ENGGVP---RLKGRTMRDFVGLD-QRVDDETKRALIDFSYYLTIGNMDEAYRAVKLID-----------------------------------NVSVWENMAHMCVKTRRLDVAEMCMGNMGHVRGAQALRES----------KREPEVEARIATVAIQLGLLEDAERLYIECGRYDLLNKMLRHSGQWTKSLEVANSFDRIHLRESHFEYGRHLESMGDFKAAIANYEASGTHRKQVPRMLFEAERLDELESYIQTQCD--------------------EELTKWWGHYCESLGEYDRSIRVYQRASDDLSLVRVHCVMENFKAA----------------------AEIALNSTNLAASYHLARQCE-QRGEINEAIQFYSRAGRYNHAVRLAKERGLNADIVNLALRA-SKTTMVEAARYLEAKGFNEDAVVLYQK 1175          
The following BLAST results are available for this feature:
BLAST of NO13G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22867.14.700e-10450.57intraflagellar transport particle protein ift140 [... [more]
XP_009036412.14.900e-6928.39hypothetical protein AURANDRAFT_71429 [Aureococcus... [more]
XP_005855058.19.200e-6855.89intraflagellar transport 140-like protein, partial... [more]
XP_009039874.18.600e-6629.18hypothetical protein AURANDRAFT_30803 [Aureococcus... [more]
XP_007423902.15.200e-6327.69PREDICTED: intraflagellar transport protein 140 ho... [more]
OQR87348.11.200e-6228.32Intraflagellar Transport protein [Achlya hypogyna][more]
XP_012208438.11.100e-6028.21hypothetical protein SPRG_14091 [Saprolegnia paras... [more]
XP_017923067.12.400e-6027.94PREDICTED: intraflagellar transport protein 140 ho... [more]
XP_017664320.14.100e-6027.99PREDICTED: intraflagellar transport protein 140 ho... [more]
GBG32279.14.100e-6027.94Intraflagellar transport protein 140-like [Auranti... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL132nonsL132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR056ngnoR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001884NSK001884Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00050.1NO13G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100341g5gene7587Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00050.1NO13G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00050 ID=NO13G00050|Name=NO13G00050|organism=Nannochloropsis oceanica|type=gene|length=2490bp
ATGCACCCTTCAAGCCCCCCCAAGACTATAATAGCTTCCTTTGGAAGATG
TTGTTTGCATAAAGACGGTGTGGCCATTTTTGTCTCGTCCTTGCAAAGCC
GCGGGCCTCCAAAAATTGCGGTGGTGGCCCATTCCCAAGCCTCCCCTCTG
GTAGAGCTGTCTCTTGACCAAGTTTTTCTTACTGGAAAAAATACTGCCGG
TCCTGGCGCGACCCATTGTGTCGAAGGGTTGAAAATTCAAGATGATATGC
TTGCTGTGTGGTCCTTGCATGATGTACGGGTGTATCGATTTTACGGGTCC
ACAACCTCACCGTCTCTGGTGGCCTCTTTGACCGTTCCCAAACCAATTGC
TGCCCTCGCCCTACATGGCTCTGTGCTCTTCATGGCCTTAGCGGGTGAAA
ATAAAGTGGATATCTACCGCGATCTGCTGGCAAGGAGGGCAATGAAAGGT
GAAGCTGCTGCCGAATCCAGACCGTGCTCTGCAGTGCCTTTCAGTGCAAA
GGAAGGCTGCCCTTTGTTTCTGGATGTCCGAGGAAATGTCCTCGCCGTTG
CAACAGATAGACGTGTCCTCAAACTCTTCAGCTTGGACAAGAGCGGTATG
CCGCAACAATGGAGTAGTTTCGGGCATTTAAGCTTGCCTGAAGAAAAGGA
GGAAGAGAAAGAGGGCGATGAGGGGGTGAAGAAAGGTATGACCCTTACGT
CCATACATTTAAATGCCGACGCCACCCGTGTGAGCTTCGTCTTGTCTTCA
ATTCCCTCTTTTTCTCCTCTTCCCGCGCGCCTTTGCATCTATGATGTTGA
TCGTGACGTGGCTCATGCTGTGTCCTGCTTAACCACTGCTGCCGCCTCGC
CAACTACGCATATGTGGGACGCCGAGGACCCCAAGTTCCTCGTTTGCATC
TATACCACGAATACTTTCACATCACCTATCGTCAATGCCCGCGACACAAG
CAAGAAAAAGACTGAGACCAAAAAAAAAGAAGGGAATGAGGACGCCGGCG
TCGTGATCACCCTTCTCGTCTCGCCCGATGCGGCCAAGGTTACGTGCCTT
GAGACATCTCCGCTCTCCCCTCCTTTGGGCGACCTTCTAGGTGTGCAAGC
CCCTCATTTTTACTTCATTTCATCATCCCCTAACTTATCCACCTCGAACA
TCCCCCCTTCCTCGTTAATGCTGAAGCGGACGATGCGGGATTTCGCGGGA
CTGGAATACGATAGCCTTACCTCCAGTGCGCAAGCAGCCCTGAAAGCCTT
CCATTACCACCTTCTCACGCAAGACTGGCACGCCGCACACCAAGCGCTTA
AATCTGTGTCTATACAGCAGCAGCGGCAGATGCAGCTGCTGCAAAAGGGA
CGAAGAGGAAGGGAAGGAGGCGACTGTAGTAGCACTGGCCACGAACAGCA
GCAGCAACAGAAGCATTTGGTCTGCGTGTGGCGTAATATGGCGCGTCTCT
GCCTGCAGACACGTTGCGTGGACGTCGCTGAACTTTGTCTAGGACATATG
GGCCATGTTCGAGGCTTGACCGCCGTTCGCGAAGCCGTATCGACTTCCTC
CCTCTCTTCCTCCTCCTCCTCCTCCTCAAGCATCGACGTCGCCCTAGCCA
TGGTTGCCATTCAGCTTGGTCTACTCAAGGAAGCAGCTGCCCTCTACACT
CAAGCCAAACGATTCGATCTTCTCAATCGAATGTTTCAAGCAGCAGGCCA
ATGGGAGGATGCTCTGCGCGTGGCACAGACGGAGGATAGGTTCAATTTGA
GGCGGACGCACTTTGAATATGCGCGGCAATTGGAGGGCGCAAGGGAATGG
GAGAAAGCGATATGGCATTATGAGAAGGCGGGGGCTCAGGCAAGAGAGGT
GTCACGGATGCTGTTGAAGGTGGGGAAGATGGCTGAGCTGGAAATGTACG
TCAAAAAGCGGAGGGGAAGGGGAGAGAAGGAGGAAGAGCATGAATGGAAG
GGAGAGAAGGAAGAGGAGGATGCAAGGACCGCACTGTGGCAGTGGTGGGG
AAAGTATTGTGAATCTAAAGGAGATATTAGAGGGGCTACGGAGGCGTATG
AAAATGCCTCAGACCTGGTGGCTCTTGTTCGGCTAGCGTGCGTTGCACAG
GATGTGGAGACAGCAGAGGCCTTGCTTGAGGGGGAGACGACAAAAGGGAA
AATCTTACCCCGCGAGAAACACCATCCACTCACCAAGCTGCCCGTCTCTG
CTGTCAATAGAGCTGCATCTTACCATCTCGCTCGACACTATGAAGGGGCT
TTGCATGATATTTTGCCCGCTCTCGCCCACTACGCGCGAGCGGGATGCTT
TCAGCATTGCCTACGGCTGGCGATGGCCCACGAGCTAGACGGAGACGTGA
TGCATTTTGCCCTGCAAAGTGACAGTGAACGTTTGATGCGACAGAGCGCG
AGATATTTTTCAGGGAGGGGTCAGGAGGAGCGGGCACGGGAGCTGTTGGA
CAAGGCGGAGGAGAAGGTGAAAGAAGGAAATAGAGTGTAG
back to top

protein sequence of NO13G00050.1

>NO13G00050.1-protein ID=NO13G00050.1-protein|Name=NO13G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=830bp
MHPSSPPKTIIASFGRCCLHKDGVAIFVSSLQSRGPPKIAVVAHSQASPL
VELSLDQVFLTGKNTAGPGATHCVEGLKIQDDMLAVWSLHDVRVYRFYGS
TTSPSLVASLTVPKPIAALALHGSVLFMALAGENKVDIYRDLLARRAMKG
EAAAESRPCSAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGM
PQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSS
IPSFSPLPARLCIYDVDRDVAHAVSCLTTAAASPTTHMWDAEDPKFLVCI
YTTNTFTSPIVNARDTSKKKTETKKKEGNEDAGVVITLLVSPDAAKVTCL
ETSPLSPPLGDLLGVQAPHFYFISSSPNLSTSNIPPSSLMLKRTMRDFAG
LEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMQLLQKG
RRGREGGDCSSTGHEQQQQQKHLVCVWRNMARLCLQTRCVDVAELCLGHM
GHVRGLTAVREAVSTSSLSSSSSSSSSIDVALAMVAIQLGLLKEAAALYT
QAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREW
EKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKKRRGRGEKEEEHEWK
GEKEEEDARTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQ
DVETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGA
LHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSA
RYFSGRGQEERARELLDKAEEKVKEGNRV*
back to top
Synonyms
Publications