NO13G00050.1, NO13G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00050.1
Unique NameNO13G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2490
Alignment locationchr13:12925..15414 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:12925..15414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G00050.1 vs.
Match: EWM22867.1 (intraflagellar transport particle protein ift140 [Nannochloropsis gaditana])

HSP 1 Score: 420.2 bits (1079), Expect = 1.500e-113
Identity = 238/435 (54.71%), Postives = 310/435 (71.26%), Query Frame = 0
Query:  395 MRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMQLLQKGRRGREGGDCSSTGHEQQQQQKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSTSSLSSS----SSSSSSIDVALAMVAIQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKKRRGRGEKEEEHEWKGEKEEEDARTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLE----GETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQEERARELLDKAEE 822
            M  FAGL Y++ +  A++ LKAFH+ L +QDWHAAHQ+L+ +  Q+Q   +  +K +   E  D +    ++   ++ L+C+WRNMA L L+ R V+VAE CL +MGH+RG+ AVREAVS+ SL  S    +SS+ S D+ L MVAIQLGLL+EAAALY +AKRFDLLNRM+QAAG+WE AL+VA+ +DR +LR THF+YAR+LE   EW+KAI+HYEKAGAQAREV RML K GK+ +LE Y+ +++             ++E  DA+  LW+WWG+YCESK D++ A EAY  A+DLVALVRLACVAQDV  AEALL+    G   +G+I  R+  +        A+  AASYHLARHYEGAL+D+LPAL HYARAGCF+HC+RLA AHELD DVM +ALQS    LM+ SA+YF    Q ERA+EL+ KA +
Sbjct:    1 MPSFAGLSYENFSLHAKSCLKAFHFQLFSQDWHAAHQSLRIIFPQRQPDSKAGKKCQN-EEPNDHNQQLRKEGNCKQQLLCIWRNMAHLSLRNRRVEVAEHCLSYMGHIRGVHAVREAVSSPSLYPSLPSLTSSTCSTDIPLGMVAIQLGLLQEAAALYIRAKRFDLLNRMYQAAGKWEKALQVAEKDDRLHLRTTHFQYARRLERMSEWDKAIFHYEKAGAQAREVPRMLHKAGKIEDLEKYLSRQKST---------VADRESGDAK-MLWRWWGRYCESKRDVKAAKEAYRKAADLVALVRLACVAQDVGAAEALLDDKDAGALHQGEISWRQASN-------HAMKAAASYHLARHYEGALYDVLPALTHYARAGCFKHCIRLAKAHELDNDVMQYALQSGQADLMQDSAQYFLKLDQSERAQELIGKARK 417          
The following BLAST results are available for this feature:
BLAST of NO13G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22867.11.500e-11354.71intraflagellar transport particle protein ift140 [... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00050NO13G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00050.1NO13G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00050.1.cds1NO13G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00050.1 ID=NO13G00050.1|Name=NO13G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2490bp
ATGCACCCTTCAAGCCCCCCCAAGACTATAATAGCTTCCTTTGGAAGATG
TTGTTTGCATAAAGACGGTGTGGCCATTTTTGTCTCGTCCTTGCAAAGCC
GCGGGCCTCCAAAAATTGCGGTGGTGGCCCATTCCCAAGCCTCCCCTCTG
GTAGAGCTGTCTCTTGACCAAGTTTTTCTTACTGGAAAAAATACTGCCGG
TCCTGGCGCGACCCATTGTGTCGAAGGGTTGAAAATTCAAGATGATATGC
TTGCTGTGTGGTCCTTGCATGATGTACGGGTGTATCGATTTTACGGGTCC
ACAACCTCACCGTCTCTGGTGGCCTCTTTGACCGTTCCCAAACCAATTGC
TGCCCTCGCCCTACATGGCTCTGTGCTCTTCATGGCCTTAGCGGGTGAAA
ATAAAGTGGATATCTACCGCGATCTGCTGGCAAGGAGGGCAATGAAAGGT
GAAGCTGCTGCCGAATCCAGACCGTGCTCTGCAGTGCCTTTCAGTGCAAA
GGAAGGCTGCCCTTTGTTTCTGGATGTCCGAGGAAATGTCCTCGCCGTTG
CAACAGATAGACGTGTCCTCAAACTCTTCAGCTTGGACAAGAGCGGTATG
CCGCAACAATGGAGTAGTTTCGGGCATTTAAGCTTGCCTGAAGAAAAGGA
GGAAGAGAAAGAGGGCGATGAGGGGGTGAAGAAAGGTATGACCCTTACGT
CCATACATTTAAATGCCGACGCCACCCGTGTGAGCTTCGTCTTGTCTTCA
ATTCCCTCTTTTTCTCCTCTTCCCGCGCGCCTTTGCATCTATGATGTTGA
TCGTGACGTGGCTCATGCTGTGTCCTGCTTAACCACTGCTGCCGCCTCGC
CAACTACGCATATGTGGGACGCCGAGGACCCCAAGTTCCTCGTTTGCATC
TATACCACGAATACTTTCACATCACCTATCGTCAATGCCCGCGACACAAG
CAAGAAAAAGACTGAGACCAAAAAAAAAGAAGGGAATGAGGACGCCGGCG
TCGTGATCACCCTTCTCGTCTCGCCCGATGCGGCCAAGGTTACGTGCCTT
GAGACATCTCCGCTCTCCCCTCCTTTGGGCGACCTTCTAGGTGTGCAAGC
CCCTCATTTTTACTTCATTTCATCATCCCCTAACTTATCCACCTCGAACA
TCCCCCCTTCCTCGTTAATGCTGAAGCGGACGATGCGGGATTTCGCGGGA
CTGGAATACGATAGCCTTACCTCCAGTGCGCAAGCAGCCCTGAAAGCCTT
CCATTACCACCTTCTCACGCAAGACTGGCACGCCGCACACCAAGCGCTTA
AATCTGTGTCTATACAGCAGCAGCGGCAGATGCAGCTGCTGCAAAAGGGA
CGAAGAGGAAGGGAAGGAGGCGACTGTAGTAGCACTGGCCACGAACAGCA
GCAGCAACAGAAGCATTTGGTCTGCGTGTGGCGTAATATGGCGCGTCTCT
GCCTGCAGACACGTTGCGTGGACGTCGCTGAACTTTGTCTAGGACATATG
GGCCATGTTCGAGGCTTGACCGCCGTTCGCGAAGCCGTATCGACTTCCTC
CCTCTCTTCCTCCTCCTCCTCCTCCTCAAGCATCGACGTCGCCCTAGCCA
TGGTTGCCATTCAGCTTGGTCTACTCAAGGAAGCAGCTGCCCTCTACACT
CAAGCCAAACGATTCGATCTTCTCAATCGAATGTTTCAAGCAGCAGGCCA
ATGGGAGGATGCTCTGCGCGTGGCACAGACGGAGGATAGGTTCAATTTGA
GGCGGACGCACTTTGAATATGCGCGGCAATTGGAGGGCGCAAGGGAATGG
GAGAAAGCGATATGGCATTATGAGAAGGCGGGGGCTCAGGCAAGAGAGGT
GTCACGGATGCTGTTGAAGGTGGGGAAGATGGCTGAGCTGGAAATGTACG
TCAAAAAGCGGAGGGGAAGGGGAGAGAAGGAGGAAGAGCATGAATGGAAG
GGAGAGAAGGAAGAGGAGGATGCAAGGACCGCACTGTGGCAGTGGTGGGG
AAAGTATTGTGAATCTAAAGGAGATATTAGAGGGGCTACGGAGGCGTATG
AAAATGCCTCAGACCTGGTGGCTCTTGTTCGGCTAGCGTGCGTTGCACAG
GATGTGGAGACAGCAGAGGCCTTGCTTGAGGGGGAGACGACAAAAGGGAA
AATCTTACCCCGCGAGAAACACCATCCACTCACCAAGCTGCCCGTCTCTG
CTGTCAATAGAGCTGCATCTTACCATCTCGCTCGACACTATGAAGGGGCT
TTGCATGATATTTTGCCCGCTCTCGCCCACTACGCGCGAGCGGGATGCTT
TCAGCATTGCCTACGGCTGGCGATGGCCCACGAGCTAGACGGAGACGTGA
TGCATTTTGCCCTGCAAAGTGACAGTGAACGTTTGATGCGACAGAGCGCG
AGATATTTTTCAGGGAGGGGTCAGGAGGAGCGGGCACGGGAGCTGTTGGA
CAAGGCGGAGGAGAAGGTGAAAGAAGGAAATAGAGTGTAG
back to top

protein sequence of NO13G00050.1

>NO13G00050.1-protein ID=NO13G00050.1-protein|Name=NO13G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=830bp
MHPSSPPKTIIASFGRCCLHKDGVAIFVSSLQSRGPPKIAVVAHSQASPL
VELSLDQVFLTGKNTAGPGATHCVEGLKIQDDMLAVWSLHDVRVYRFYGS
TTSPSLVASLTVPKPIAALALHGSVLFMALAGENKVDIYRDLLARRAMKG
EAAAESRPCSAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGM
PQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSS
IPSFSPLPARLCIYDVDRDVAHAVSCLTTAAASPTTHMWDAEDPKFLVCI
YTTNTFTSPIVNARDTSKKKTETKKKEGNEDAGVVITLLVSPDAAKVTCL
ETSPLSPPLGDLLGVQAPHFYFISSSPNLSTSNIPPSSLMLKRTMRDFAG
LEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMQLLQKG
RRGREGGDCSSTGHEQQQQQKHLVCVWRNMARLCLQTRCVDVAELCLGHM
GHVRGLTAVREAVSTSSLSSSSSSSSSIDVALAMVAIQLGLLKEAAALYT
QAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREW
EKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKKRRGRGEKEEEHEWK
GEKEEEDARTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQ
DVETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGA
LHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSA
RYFSGRGQEERARELLDKAEEKVKEGNRV*
back to top

mRNA from alignment at chr13:12925..15414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00050.1 ID=NO13G00050.1|Name=NO13G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2490bp|location=Sequence derived from alignment at chr13:12925..15414+ (Nannochloropsis oceanica)
ATGCACCCTTCAAGCCCCCCCAAGACTATAATAGCTTCCTTTGGAAGATG TTGTTTGCATAAAGACGGTGTGGCCATTTTTGTCTCGTCCTTGCAAAGCC GCGGGCCTCCAAAAATTGCGGTGGTGGCCCATTCCCAAGCCTCCCCTCTG GTAGAGCTGTCTCTTGACCAAGTTTTTCTTACTGGAAAAAATACTGCCGG TCCTGGCGCGACCCATTGTGTCGAAGGGTTGAAAATTCAAGATGATATGC TTGCTGTGTGGTCCTTGCATGATGTACGGGTGTATCGATTTTACGGGTCC ACAACCTCACCGTCTCTGGTGGCCTCTTTGACCGTTCCCAAACCAATTGC TGCCCTCGCCCTACATGGCTCTGTGCTCTTCATGGCCTTAGCGGGTGAAA ATAAAGTGGATATCTACCGCGATCTGCTGGCAAGGAGGGCAATGAAAGGT GAAGCTGCTGCCGAATCCAGACCGTGCTCTGCAGTGCCTTTCAGTGCAAA GGAAGGCTGCCCTTTGTTTCTGGATGTCCGAGGAAATGTCCTCGCCGTTG CAACAGATAGACGTGTCCTCAAACTCTTCAGCTTGGACAAGAGCGGTATG CCGCAACAATGGAGTAGTTTCGGGCATTTAAGCTTGCCTGAAGAAAAGGA GGAAGAGAAAGAGGGCGATGAGGGGGTGAAGAAAGGTATGACCCTTACGT CCATACATTTAAATGCCGACGCCACCCGTGTGAGCTTCGTCTTGTCTTCA ATTCCCTCTTTTTCTCCTCTTCCCGCGCGCCTTTGCATCTATGATGTTGA TCGTGACGTGGCTCATGCTGTGTCCTGCTTAACCACTGCTGCCGCCTCGC CAACTACGCATATGTGGGACGCCGAGGACCCCAAGTTCCTCGTTTGCATC TATACCACGAATACTTTCACATCACCTATCGTCAATGCCCGCGACACAAG CAAGAAAAAGACTGAGACCAAAAAAAAAGAAGGGAATGAGGACGCCGGCG TCGTGATCACCCTTCTCGTCTCGCCCGATGCGGCCAAGGTTACGTGCCTT GAGACATCTCCGCTCTCCCCTCCTTTGGGCGACCTTCTAGGTGTGCAAGC CCCTCATTTTTACTTCATTTCATCATCCCCTAACTTATCCACCTCGAACA TCCCCCCTTCCTCGTTAATGCTGAAGCGGACGATGCGGGATTTCGCGGGA CTGGAATACGATAGCCTTACCTCCAGTGCGCAAGCAGCCCTGAAAGCCTT CCATTACCACCTTCTCACGCAAGACTGGCACGCCGCACACCAAGCGCTTA AATCTGTGTCTATACAGCAGCAGCGGCAGATGCAGCTGCTGCAAAAGGGA CGAAGAGGAAGGGAAGGAGGCGACTGTAGTAGCACTGGCCACGAACAGCA GCAGCAACAGAAGCATTTGGTCTGCGTGTGGCGTAATATGGCGCGTCTCT GCCTGCAGACACGTTGCGTGGACGTCGCTGAACTTTGTCTAGGACATATG GGCCATGTTCGAGGCTTGACCGCCGTTCGCGAAGCCGTATCGACTTCCTC CCTCTCTTCCTCCTCCTCCTCCTCCTCAAGCATCGACGTCGCCCTAGCCA TGGTTGCCATTCAGCTTGGTCTACTCAAGGAAGCAGCTGCCCTCTACACT CAAGCCAAACGATTCGATCTTCTCAATCGAATGTTTCAAGCAGCAGGCCA ATGGGAGGATGCTCTGCGCGTGGCACAGACGGAGGATAGGTTCAATTTGA GGCGGACGCACTTTGAATATGCGCGGCAATTGGAGGGCGCAAGGGAATGG GAGAAAGCGATATGGCATTATGAGAAGGCGGGGGCTCAGGCAAGAGAGGT GTCACGGATGCTGTTGAAGGTGGGGAAGATGGCTGAGCTGGAAATGTACG TCAAAAAGCGGAGGGGAAGGGGAGAGAAGGAGGAAGAGCATGAATGGAAG GGAGAGAAGGAAGAGGAGGATGCAAGGACCGCACTGTGGCAGTGGTGGGG AAAGTATTGTGAATCTAAAGGAGATATTAGAGGGGCTACGGAGGCGTATG AAAATGCCTCAGACCTGGTGGCTCTTGTTCGGCTAGCGTGCGTTGCACAG GATGTGGAGACAGCAGAGGCCTTGCTTGAGGGGGAGACGACAAAAGGGAA AATCTTACCCCGCGAGAAACACCATCCACTCACCAAGCTGCCCGTCTCTG CTGTCAATAGAGCTGCATCTTACCATCTCGCTCGACACTATGAAGGGGCT TTGCATGATATTTTGCCCGCTCTCGCCCACTACGCGCGAGCGGGATGCTT TCAGCATTGCCTACGGCTGGCGATGGCCCACGAGCTAGACGGAGACGTGA TGCATTTTGCCCTGCAAAGTGACAGTGAACGTTTGATGCGACAGAGCGCG AGATATTTTTCAGGGAGGGGTCAGGAGGAGCGGGCACGGGAGCTGTTGGA CAAGGCGGAGGAGAAGGTGAAAGAAGGAAATAGAGTGTAG
back to top

Coding sequence (CDS) from alignment at chr13:12925..15414+

>NO13G00050.1 ID=NO13G00050.1|Name=NO13G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=2490bp|location=Sequence derived from alignment at chr13:12925..15414+ (Nannochloropsis oceanica)
ATGCACCCTTCAAGCCCCCCCAAGACTATAATAGCTTCCTTTGGAAGATG
TTGTTTGCATAAAGACGGTGTGGCCATTTTTGTCTCGTCCTTGCAAAGCC
GCGGGCCTCCAAAAATTGCGGTGGTGGCCCATTCCCAAGCCTCCCCTCTG
GTAGAGCTGTCTCTTGACCAAGTTTTTCTTACTGGAAAAAATACTGCCGG
TCCTGGCGCGACCCATTGTGTCGAAGGGTTGAAAATTCAAGATGATATGC
TTGCTGTGTGGTCCTTGCATGATGTACGGGTGTATCGATTTTACGGGTCC
ACAACCTCACCGTCTCTGGTGGCCTCTTTGACCGTTCCCAAACCAATTGC
TGCCCTCGCCCTACATGGCTCTGTGCTCTTCATGGCCTTAGCGGGTGAAA
ATAAAGTGGATATCTACCGCGATCTGCTGGCAAGGAGGGCAATGAAAGGT
GAAGCTGCTGCCGAATCCAGACCGTGCTCTGCAGTGCCTTTCAGTGCAAA
GGAAGGCTGCCCTTTGTTTCTGGATGTCCGAGGAAATGTCCTCGCCGTTG
CAACAGATAGACGTGTCCTCAAACTCTTCAGCTTGGACAAGAGCGGTATG
CCGCAACAATGGAGTAGTTTCGGGCATTTAAGCTTGCCTGAAGAAAAGGA
GGAAGAGAAAGAGGGCGATGAGGGGGTGAAGAAAGGTATGACCCTTACGT
CCATACATTTAAATGCCGACGCCACCCGTGTGAGCTTCGTCTTGTCTTCA
ATTCCCTCTTTTTCTCCTCTTCCCGCGCGCCTTTGCATCTATGATGTTGA
TCGTGACGTGGCTCATGCTGTGTCCTGCTTAACCACTGCTGCCGCCTCGC
CAACTACGCATATGTGGGACGCCGAGGACCCCAAGTTCCTCGTTTGCATC
TATACCACGAATACTTTCACATCACCTATCGTCAATGCCCGCGACACAAG
CAAGAAAAAGACTGAGACCAAAAAAAAAGAAGGGAATGAGGACGCCGGCG
TCGTGATCACCCTTCTCGTCTCGCCCGATGCGGCCAAGGTTACGTGCCTT
GAGACATCTCCGCTCTCCCCTCCTTTGGGCGACCTTCTAGGTGTGCAAGC
CCCTCATTTTTACTTCATTTCATCATCCCCTAACTTATCCACCTCGAACA
TCCCCCCTTCCTCGTTAATGCTGAAGCGGACGATGCGGGATTTCGCGGGA
CTGGAATACGATAGCCTTACCTCCAGTGCGCAAGCAGCCCTGAAAGCCTT
CCATTACCACCTTCTCACGCAAGACTGGCACGCCGCACACCAAGCGCTTA
AATCTGTGTCTATACAGCAGCAGCGGCAGATGCAGCTGCTGCAAAAGGGA
CGAAGAGGAAGGGAAGGAGGCGACTGTAGTAGCACTGGCCACGAACAGCA
GCAGCAACAGAAGCATTTGGTCTGCGTGTGGCGTAATATGGCGCGTCTCT
GCCTGCAGACACGTTGCGTGGACGTCGCTGAACTTTGTCTAGGACATATG
GGCCATGTTCGAGGCTTGACCGCCGTTCGCGAAGCCGTATCGACTTCCTC
CCTCTCTTCCTCCTCCTCCTCCTCCTCAAGCATCGACGTCGCCCTAGCCA
TGGTTGCCATTCAGCTTGGTCTACTCAAGGAAGCAGCTGCCCTCTACACT
CAAGCCAAACGATTCGATCTTCTCAATCGAATGTTTCAAGCAGCAGGCCA
ATGGGAGGATGCTCTGCGCGTGGCACAGACGGAGGATAGGTTCAATTTGA
GGCGGACGCACTTTGAATATGCGCGGCAATTGGAGGGCGCAAGGGAATGG
GAGAAAGCGATATGGCATTATGAGAAGGCGGGGGCTCAGGCAAGAGAGGT
GTCACGGATGCTGTTGAAGGTGGGGAAGATGGCTGAGCTGGAAATGTACG
TCAAAAAGCGGAGGGGAAGGGGAGAGAAGGAGGAAGAGCATGAATGGAAG
GGAGAGAAGGAAGAGGAGGATGCAAGGACCGCACTGTGGCAGTGGTGGGG
AAAGTATTGTGAATCTAAAGGAGATATTAGAGGGGCTACGGAGGCGTATG
AAAATGCCTCAGACCTGGTGGCTCTTGTTCGGCTAGCGTGCGTTGCACAG
GATGTGGAGACAGCAGAGGCCTTGCTTGAGGGGGAGACGACAAAAGGGAA
AATCTTACCCCGCGAGAAACACCATCCACTCACCAAGCTGCCCGTCTCTG
CTGTCAATAGAGCTGCATCTTACCATCTCGCTCGACACTATGAAGGGGCT
TTGCATGATATTTTGCCCGCTCTCGCCCACTACGCGCGAGCGGGATGCTT
TCAGCATTGCCTACGGCTGGCGATGGCCCACGAGCTAGACGGAGACGTGA
TGCATTTTGCCCTGCAAAGTGACAGTGAACGTTTGATGCGACAGAGCGCG
AGATATTTTTCAGGGAGGGGTCAGGAGGAGCGGGCACGGGAGCTGTTGGA
CAAGGCGGAGGAGAAGGTGAAAGAAGGAAATAGAGTGTAG
back to top
Synonyms
Publications