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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:12925..15414 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00050.1 vs.
Match: EWM22867.1 (intraflagellar transport particle protein ift140 [Nannochloropsis gaditana]) HSP 1 Score: 420.2 bits (1079), Expect = 1.500e-113 Identity = 238/435 (54.71%), Postives = 310/435 (71.26%), Query Frame = 0
Query: 395 MRDFAGLEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMQLLQKGRRGREGGDCSSTGHEQQQQQKHLVCVWRNMARLCLQTRCVDVAELCLGHMGHVRGLTAVREAVSTSSLSSS----SSSSSSIDVALAMVAIQLGLLKEAAALYTQAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREWEKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKKRRGRGEKEEEHEWKGEKEEEDARTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQDVETAEALLE----GETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGALHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSARYFSGRGQEERARELLDKAEE 822
M FAGL Y++ + A++ LKAFH+ L +QDWHAAHQ+L+ + Q+Q + +K + E D + ++ ++ L+C+WRNMA L L+ R V+VAE CL +MGH+RG+ AVREAVS+ SL S +SS+ S D+ L MVAIQLGLL+EAAALY +AKRFDLLNRM+QAAG+WE AL+VA+ +DR +LR THF+YAR+LE EW+KAI+HYEKAGAQAREV RML K GK+ +LE Y+ +++ ++E DA+ LW+WWG+YCESK D++ A EAY A+DLVALVRLACVAQDV AEALL+ G +G+I R+ + A+ AASYHLARHYEGAL+D+LPAL HYARAGCF+HC+RLA AHELD DVM +ALQS LM+ SA+YF Q ERA+EL+ KA +
Sbjct: 1 MPSFAGLSYENFSLHAKSCLKAFHFQLFSQDWHAAHQSLRIIFPQRQPDSKAGKKCQN-EEPNDHNQQLRKEGNCKQQLLCIWRNMAHLSLRNRRVEVAEHCLSYMGHIRGVHAVREAVSSPSLYPSLPSLTSSTCSTDIPLGMVAIQLGLLQEAAALYIRAKRFDLLNRMYQAAGKWEKALQVAEKDDRLHLRTTHFQYARRLERMSEWDKAIFHYEKAGAQAREVPRMLHKAGKIEDLEKYLSRQKST---------VADRESGDAK-MLWRWWGRYCESKRDVKAAKEAYRKAADLVALVRLACVAQDVGAAEALLDDKDAGALHQGEISWRQASN-------HAMKAAASYHLARHYEGALYDVLPALTHYARAGCFKHCIRLAKAHELDNDVMQYALQSGQADLMQDSAQYFLKLDQSERAQELIGKARK 417
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00050.1 ID=NO13G00050.1|Name=NO13G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2490bp ATGCACCCTTCAAGCCCCCCCAAGACTATAATAGCTTCCTTTGGAAGATG TTGTTTGCATAAAGACGGTGTGGCCATTTTTGTCTCGTCCTTGCAAAGCC GCGGGCCTCCAAAAATTGCGGTGGTGGCCCATTCCCAAGCCTCCCCTCTG GTAGAGCTGTCTCTTGACCAAGTTTTTCTTACTGGAAAAAATACTGCCGG TCCTGGCGCGACCCATTGTGTCGAAGGGTTGAAAATTCAAGATGATATGC TTGCTGTGTGGTCCTTGCATGATGTACGGGTGTATCGATTTTACGGGTCC ACAACCTCACCGTCTCTGGTGGCCTCTTTGACCGTTCCCAAACCAATTGC TGCCCTCGCCCTACATGGCTCTGTGCTCTTCATGGCCTTAGCGGGTGAAA ATAAAGTGGATATCTACCGCGATCTGCTGGCAAGGAGGGCAATGAAAGGT GAAGCTGCTGCCGAATCCAGACCGTGCTCTGCAGTGCCTTTCAGTGCAAA GGAAGGCTGCCCTTTGTTTCTGGATGTCCGAGGAAATGTCCTCGCCGTTG CAACAGATAGACGTGTCCTCAAACTCTTCAGCTTGGACAAGAGCGGTATG CCGCAACAATGGAGTAGTTTCGGGCATTTAAGCTTGCCTGAAGAAAAGGA GGAAGAGAAAGAGGGCGATGAGGGGGTGAAGAAAGGTATGACCCTTACGT CCATACATTTAAATGCCGACGCCACCCGTGTGAGCTTCGTCTTGTCTTCA ATTCCCTCTTTTTCTCCTCTTCCCGCGCGCCTTTGCATCTATGATGTTGA TCGTGACGTGGCTCATGCTGTGTCCTGCTTAACCACTGCTGCCGCCTCGC CAACTACGCATATGTGGGACGCCGAGGACCCCAAGTTCCTCGTTTGCATC TATACCACGAATACTTTCACATCACCTATCGTCAATGCCCGCGACACAAG CAAGAAAAAGACTGAGACCAAAAAAAAAGAAGGGAATGAGGACGCCGGCG TCGTGATCACCCTTCTCGTCTCGCCCGATGCGGCCAAGGTTACGTGCCTT GAGACATCTCCGCTCTCCCCTCCTTTGGGCGACCTTCTAGGTGTGCAAGC CCCTCATTTTTACTTCATTTCATCATCCCCTAACTTATCCACCTCGAACA TCCCCCCTTCCTCGTTAATGCTGAAGCGGACGATGCGGGATTTCGCGGGA CTGGAATACGATAGCCTTACCTCCAGTGCGCAAGCAGCCCTGAAAGCCTT CCATTACCACCTTCTCACGCAAGACTGGCACGCCGCACACCAAGCGCTTA AATCTGTGTCTATACAGCAGCAGCGGCAGATGCAGCTGCTGCAAAAGGGA CGAAGAGGAAGGGAAGGAGGCGACTGTAGTAGCACTGGCCACGAACAGCA GCAGCAACAGAAGCATTTGGTCTGCGTGTGGCGTAATATGGCGCGTCTCT GCCTGCAGACACGTTGCGTGGACGTCGCTGAACTTTGTCTAGGACATATG GGCCATGTTCGAGGCTTGACCGCCGTTCGCGAAGCCGTATCGACTTCCTC CCTCTCTTCCTCCTCCTCCTCCTCCTCAAGCATCGACGTCGCCCTAGCCA TGGTTGCCATTCAGCTTGGTCTACTCAAGGAAGCAGCTGCCCTCTACACT CAAGCCAAACGATTCGATCTTCTCAATCGAATGTTTCAAGCAGCAGGCCA ATGGGAGGATGCTCTGCGCGTGGCACAGACGGAGGATAGGTTCAATTTGA GGCGGACGCACTTTGAATATGCGCGGCAATTGGAGGGCGCAAGGGAATGG GAGAAAGCGATATGGCATTATGAGAAGGCGGGGGCTCAGGCAAGAGAGGT GTCACGGATGCTGTTGAAGGTGGGGAAGATGGCTGAGCTGGAAATGTACG TCAAAAAGCGGAGGGGAAGGGGAGAGAAGGAGGAAGAGCATGAATGGAAG GGAGAGAAGGAAGAGGAGGATGCAAGGACCGCACTGTGGCAGTGGTGGGG AAAGTATTGTGAATCTAAAGGAGATATTAGAGGGGCTACGGAGGCGTATG AAAATGCCTCAGACCTGGTGGCTCTTGTTCGGCTAGCGTGCGTTGCACAG GATGTGGAGACAGCAGAGGCCTTGCTTGAGGGGGAGACGACAAAAGGGAA AATCTTACCCCGCGAGAAACACCATCCACTCACCAAGCTGCCCGTCTCTG CTGTCAATAGAGCTGCATCTTACCATCTCGCTCGACACTATGAAGGGGCT TTGCATGATATTTTGCCCGCTCTCGCCCACTACGCGCGAGCGGGATGCTT TCAGCATTGCCTACGGCTGGCGATGGCCCACGAGCTAGACGGAGACGTGA TGCATTTTGCCCTGCAAAGTGACAGTGAACGTTTGATGCGACAGAGCGCG AGATATTTTTCAGGGAGGGGTCAGGAGGAGCGGGCACGGGAGCTGTTGGA CAAGGCGGAGGAGAAGGTGAAAGAAGGAAATAGAGTGTAG back to topprotein sequence of NO13G00050.1 >NO13G00050.1-protein ID=NO13G00050.1-protein|Name=NO13G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=830bp MHPSSPPKTIIASFGRCCLHKDGVAIFVSSLQSRGPPKIAVVAHSQASPL VELSLDQVFLTGKNTAGPGATHCVEGLKIQDDMLAVWSLHDVRVYRFYGS TTSPSLVASLTVPKPIAALALHGSVLFMALAGENKVDIYRDLLARRAMKG EAAAESRPCSAVPFSAKEGCPLFLDVRGNVLAVATDRRVLKLFSLDKSGM PQQWSSFGHLSLPEEKEEEKEGDEGVKKGMTLTSIHLNADATRVSFVLSS IPSFSPLPARLCIYDVDRDVAHAVSCLTTAAASPTTHMWDAEDPKFLVCI YTTNTFTSPIVNARDTSKKKTETKKKEGNEDAGVVITLLVSPDAAKVTCL ETSPLSPPLGDLLGVQAPHFYFISSSPNLSTSNIPPSSLMLKRTMRDFAG LEYDSLTSSAQAALKAFHYHLLTQDWHAAHQALKSVSIQQQRQMQLLQKG RRGREGGDCSSTGHEQQQQQKHLVCVWRNMARLCLQTRCVDVAELCLGHM GHVRGLTAVREAVSTSSLSSSSSSSSSIDVALAMVAIQLGLLKEAAALYT QAKRFDLLNRMFQAAGQWEDALRVAQTEDRFNLRRTHFEYARQLEGAREW EKAIWHYEKAGAQAREVSRMLLKVGKMAELEMYVKKRRGRGEKEEEHEWK GEKEEEDARTALWQWWGKYCESKGDIRGATEAYENASDLVALVRLACVAQ DVETAEALLEGETTKGKILPREKHHPLTKLPVSAVNRAASYHLARHYEGA LHDILPALAHYARAGCFQHCLRLAMAHELDGDVMHFALQSDSERLMRQSA RYFSGRGQEERARELLDKAEEKVKEGNRV* back to topmRNA from alignment at chr13:12925..15414+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00050.1 ID=NO13G00050.1|Name=NO13G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2490bp|location=Sequence derived from alignment at chr13:12925..15414+ (Nannochloropsis oceanica) ATGCACCCTTCAAGCCCCCCCAAGACTATAATAGCTTCCTTTGGAAGATG
TTGTTTGCATAAAGACGGTGTGGCCATTTTTGTCTCGTCCTTGCAAAGCC
GCGGGCCTCCAAAAATTGCGGTGGTGGCCCATTCCCAAGCCTCCCCTCTG
GTAGAGCTGTCTCTTGACCAAGTTTTTCTTACTGGAAAAAATACTGCCGG
TCCTGGCGCGACCCATTGTGTCGAAGGGTTGAAAATTCAAGATGATATGC
TTGCTGTGTGGTCCTTGCATGATGTACGGGTGTATCGATTTTACGGGTCC
ACAACCTCACCGTCTCTGGTGGCCTCTTTGACCGTTCCCAAACCAATTGC
TGCCCTCGCCCTACATGGCTCTGTGCTCTTCATGGCCTTAGCGGGTGAAA
ATAAAGTGGATATCTACCGCGATCTGCTGGCAAGGAGGGCAATGAAAGGT
GAAGCTGCTGCCGAATCCAGACCGTGCTCTGCAGTGCCTTTCAGTGCAAA
GGAAGGCTGCCCTTTGTTTCTGGATGTCCGAGGAAATGTCCTCGCCGTTG
CAACAGATAGACGTGTCCTCAAACTCTTCAGCTTGGACAAGAGCGGTATG
CCGCAACAATGGAGTAGTTTCGGGCATTTAAGCTTGCCTGAAGAAAAGGA
GGAAGAGAAAGAGGGCGATGAGGGGGTGAAGAAAGGTATGACCCTTACGT
CCATACATTTAAATGCCGACGCCACCCGTGTGAGCTTCGTCTTGTCTTCA
ATTCCCTCTTTTTCTCCTCTTCCCGCGCGCCTTTGCATCTATGATGTTGA
TCGTGACGTGGCTCATGCTGTGTCCTGCTTAACCACTGCTGCCGCCTCGC
CAACTACGCATATGTGGGACGCCGAGGACCCCAAGTTCCTCGTTTGCATC
TATACCACGAATACTTTCACATCACCTATCGTCAATGCCCGCGACACAAG
CAAGAAAAAGACTGAGACCAAAAAAAAAGAAGGGAATGAGGACGCCGGCG
TCGTGATCACCCTTCTCGTCTCGCCCGATGCGGCCAAGGTTACGTGCCTT
GAGACATCTCCGCTCTCCCCTCCTTTGGGCGACCTTCTAGGTGTGCAAGC
CCCTCATTTTTACTTCATTTCATCATCCCCTAACTTATCCACCTCGAACA
TCCCCCCTTCCTCGTTAATGCTGAAGCGGACGATGCGGGATTTCGCGGGA
CTGGAATACGATAGCCTTACCTCCAGTGCGCAAGCAGCCCTGAAAGCCTT
CCATTACCACCTTCTCACGCAAGACTGGCACGCCGCACACCAAGCGCTTA
AATCTGTGTCTATACAGCAGCAGCGGCAGATGCAGCTGCTGCAAAAGGGA
CGAAGAGGAAGGGAAGGAGGCGACTGTAGTAGCACTGGCCACGAACAGCA
GCAGCAACAGAAGCATTTGGTCTGCGTGTGGCGTAATATGGCGCGTCTCT
GCCTGCAGACACGTTGCGTGGACGTCGCTGAACTTTGTCTAGGACATATG
GGCCATGTTCGAGGCTTGACCGCCGTTCGCGAAGCCGTATCGACTTCCTC
CCTCTCTTCCTCCTCCTCCTCCTCCTCAAGCATCGACGTCGCCCTAGCCA
TGGTTGCCATTCAGCTTGGTCTACTCAAGGAAGCAGCTGCCCTCTACACT
CAAGCCAAACGATTCGATCTTCTCAATCGAATGTTTCAAGCAGCAGGCCA
ATGGGAGGATGCTCTGCGCGTGGCACAGACGGAGGATAGGTTCAATTTGA
GGCGGACGCACTTTGAATATGCGCGGCAATTGGAGGGCGCAAGGGAATGG
GAGAAAGCGATATGGCATTATGAGAAGGCGGGGGCTCAGGCAAGAGAGGT
GTCACGGATGCTGTTGAAGGTGGGGAAGATGGCTGAGCTGGAAATGTACG
TCAAAAAGCGGAGGGGAAGGGGAGAGAAGGAGGAAGAGCATGAATGGAAG
GGAGAGAAGGAAGAGGAGGATGCAAGGACCGCACTGTGGCAGTGGTGGGG
AAAGTATTGTGAATCTAAAGGAGATATTAGAGGGGCTACGGAGGCGTATG
AAAATGCCTCAGACCTGGTGGCTCTTGTTCGGCTAGCGTGCGTTGCACAG
GATGTGGAGACAGCAGAGGCCTTGCTTGAGGGGGAGACGACAAAAGGGAA
AATCTTACCCCGCGAGAAACACCATCCACTCACCAAGCTGCCCGTCTCTG
CTGTCAATAGAGCTGCATCTTACCATCTCGCTCGACACTATGAAGGGGCT
TTGCATGATATTTTGCCCGCTCTCGCCCACTACGCGCGAGCGGGATGCTT
TCAGCATTGCCTACGGCTGGCGATGGCCCACGAGCTAGACGGAGACGTGA
TGCATTTTGCCCTGCAAAGTGACAGTGAACGTTTGATGCGACAGAGCGCG
AGATATTTTTCAGGGAGGGGTCAGGAGGAGCGGGCACGGGAGCTGTTGGA
CAAGGCGGAGGAGAAGGTGAAAGAAGGAAATAGAGTGTAG back to topCoding sequence (CDS) from alignment at chr13:12925..15414+ >NO13G00050.1 ID=NO13G00050.1|Name=NO13G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=2490bp|location=Sequence derived from alignment at chr13:12925..15414+ (Nannochloropsis oceanica) ATGCACCCTTCAAGCCCCCCCAAGACTATAATAGCTTCCTTTGGAAGATG TTGTTTGCATAAAGACGGTGTGGCCATTTTTGTCTCGTCCTTGCAAAGCC GCGGGCCTCCAAAAATTGCGGTGGTGGCCCATTCCCAAGCCTCCCCTCTG GTAGAGCTGTCTCTTGACCAAGTTTTTCTTACTGGAAAAAATACTGCCGG TCCTGGCGCGACCCATTGTGTCGAAGGGTTGAAAATTCAAGATGATATGC TTGCTGTGTGGTCCTTGCATGATGTACGGGTGTATCGATTTTACGGGTCC ACAACCTCACCGTCTCTGGTGGCCTCTTTGACCGTTCCCAAACCAATTGC TGCCCTCGCCCTACATGGCTCTGTGCTCTTCATGGCCTTAGCGGGTGAAA ATAAAGTGGATATCTACCGCGATCTGCTGGCAAGGAGGGCAATGAAAGGT GAAGCTGCTGCCGAATCCAGACCGTGCTCTGCAGTGCCTTTCAGTGCAAA GGAAGGCTGCCCTTTGTTTCTGGATGTCCGAGGAAATGTCCTCGCCGTTG CAACAGATAGACGTGTCCTCAAACTCTTCAGCTTGGACAAGAGCGGTATG CCGCAACAATGGAGTAGTTTCGGGCATTTAAGCTTGCCTGAAGAAAAGGA GGAAGAGAAAGAGGGCGATGAGGGGGTGAAGAAAGGTATGACCCTTACGT CCATACATTTAAATGCCGACGCCACCCGTGTGAGCTTCGTCTTGTCTTCA ATTCCCTCTTTTTCTCCTCTTCCCGCGCGCCTTTGCATCTATGATGTTGA TCGTGACGTGGCTCATGCTGTGTCCTGCTTAACCACTGCTGCCGCCTCGC CAACTACGCATATGTGGGACGCCGAGGACCCCAAGTTCCTCGTTTGCATC TATACCACGAATACTTTCACATCACCTATCGTCAATGCCCGCGACACAAG CAAGAAAAAGACTGAGACCAAAAAAAAAGAAGGGAATGAGGACGCCGGCG TCGTGATCACCCTTCTCGTCTCGCCCGATGCGGCCAAGGTTACGTGCCTT GAGACATCTCCGCTCTCCCCTCCTTTGGGCGACCTTCTAGGTGTGCAAGC CCCTCATTTTTACTTCATTTCATCATCCCCTAACTTATCCACCTCGAACA TCCCCCCTTCCTCGTTAATGCTGAAGCGGACGATGCGGGATTTCGCGGGA CTGGAATACGATAGCCTTACCTCCAGTGCGCAAGCAGCCCTGAAAGCCTT CCATTACCACCTTCTCACGCAAGACTGGCACGCCGCACACCAAGCGCTTA AATCTGTGTCTATACAGCAGCAGCGGCAGATGCAGCTGCTGCAAAAGGGA CGAAGAGGAAGGGAAGGAGGCGACTGTAGTAGCACTGGCCACGAACAGCA GCAGCAACAGAAGCATTTGGTCTGCGTGTGGCGTAATATGGCGCGTCTCT GCCTGCAGACACGTTGCGTGGACGTCGCTGAACTTTGTCTAGGACATATG GGCCATGTTCGAGGCTTGACCGCCGTTCGCGAAGCCGTATCGACTTCCTC CCTCTCTTCCTCCTCCTCCTCCTCCTCAAGCATCGACGTCGCCCTAGCCA TGGTTGCCATTCAGCTTGGTCTACTCAAGGAAGCAGCTGCCCTCTACACT CAAGCCAAACGATTCGATCTTCTCAATCGAATGTTTCAAGCAGCAGGCCA ATGGGAGGATGCTCTGCGCGTGGCACAGACGGAGGATAGGTTCAATTTGA GGCGGACGCACTTTGAATATGCGCGGCAATTGGAGGGCGCAAGGGAATGG GAGAAAGCGATATGGCATTATGAGAAGGCGGGGGCTCAGGCAAGAGAGGT GTCACGGATGCTGTTGAAGGTGGGGAAGATGGCTGAGCTGGAAATGTACG TCAAAAAGCGGAGGGGAAGGGGAGAGAAGGAGGAAGAGCATGAATGGAAG GGAGAGAAGGAAGAGGAGGATGCAAGGACCGCACTGTGGCAGTGGTGGGG AAAGTATTGTGAATCTAAAGGAGATATTAGAGGGGCTACGGAGGCGTATG AAAATGCCTCAGACCTGGTGGCTCTTGTTCGGCTAGCGTGCGTTGCACAG GATGTGGAGACAGCAGAGGCCTTGCTTGAGGGGGAGACGACAAAAGGGAA AATCTTACCCCGCGAGAAACACCATCCACTCACCAAGCTGCCCGTCTCTG CTGTCAATAGAGCTGCATCTTACCATCTCGCTCGACACTATGAAGGGGCT TTGCATGATATTTTGCCCGCTCTCGCCCACTACGCGCGAGCGGGATGCTT TCAGCATTGCCTACGGCTGGCGATGGCCCACGAGCTAGACGGAGACGTGA TGCATTTTGCCCTGCAAAGTGACAGTGAACGTTTGATGCGACAGAGCGCG AGATATTTTTCAGGGAGGGGTCAGGAGGAGCGGGCACGGGAGCTGTTGGA CAAGGCGGAGGAGAAGGTGAAAGAAGGAAATAGAGTGTAG back to top
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