NO12G03980, NO12G03980 (gene) Nannochloropsis oceanica

Overview
NameNO12G03980
Unique NameNO12G03980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1415
Alignment locationchr12:1139249..1140663 -

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Properties
Property NameValue
DescriptionCyclophilin-like peptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1139249..1140663 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: EWM25647.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 326.2 bits (835), Expect = 7.200e-86
Identity = 166/184 (90.22%), Postives = 174/184 (94.57%), Query Frame = 0 
Query:    1 MKHSSSATFL-LVACLVV-LHSASAFMLPRASVLAFQRVGPSIARAPAHAAGRRMMLSRSLAMAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPW 183
            M  SSS++FL LVACLV+  +SASAFMLPR S LAFQRVGPS+ARAPAHAAGRRMMLSR LAMAANP+VYFD+EIGGEK GRI MELAADVAPKTAENFRQIATGEAGFTYKGSAFHR+IPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPW
Sbjct:    1 MSRSSSSSFLTLVACLVLSSYSASAFMLPRISSLAFQRVGPSVARAPAHAAGRRMMLSRGLAMAANPQVYFDVEIGGEKAGRITMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRIIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPW 184
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: OGQ88634.1 (peptidylprolyl isomerase [Deltaproteobacteria bacterium RIFOXYD12_FULL_56_24])

HSP 1 Score: 207.2 bits (526), Expect = 4.900e-50
Identity = 99/131 (75.57%), Postives = 107/131 (81.68%), Query Frame = 0 
Query:   60 AMAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPWYCSLRVWF 191
            A+AANPKV+FDI IG EK GRI+MEL ADV PKTAENFRQ+AT E GF YKGS FHR+IP FMLQGGDIT GDGTGG+SIYGRTF DENF  +H G G LSMANAGPNTNGSQFFITT +TPW     V F
Sbjct:   18 AIAANPKVFFDIVIGDEKAGRIVMELFADVVPKTAENFRQLATHEKGFGYKGSIFHRIIPQFMLQGGDITNGDGTGGKSIYGRTFADENFFRRHLGPGTLSMANAGPNTNGSQFFITTAQTPWLDGKHVVF 148
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: OGR03426.1 (peptidylprolyl isomerase [Deltaproteobacteria bacterium RIFOXYD12_FULL_53_23])

HSP 1 Score: 202.2 bits (513), Expect = 1.600e-48
Identity = 97/130 (74.62%), Postives = 105/130 (80.77%), Query Frame = 0 
Query:   61 MAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPWYCSLRVWF 191
            MAANPKV+FDI IG EK GRI+MEL ADV PKTAENFRQ+AT E GF ++GS FHR+IP FMLQGGDIT  DGTGG+SIYGRTF DENF  KH   G LSMANAGPNTNGSQFFITTV+TPW     V F
Sbjct:    1 MAANPKVFFDIVIGDEKAGRIVMELFADVTPKTAENFRQLATHEKGFGFRGSIFHRIIPQFMLQGGDITNADGTGGKSIYGRTFADENFIRKHLWPGTLSMANAGPNTNGSQFFITTVKTPWLDGKHVVF 130
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: OGR01111.1 (peptidylprolyl isomerase [Deltaproteobacteria bacterium RIFOXYD12_FULL_55_16])

HSP 1 Score: 198.7 bits (504), Expect = 1.700e-47
Identity = 94/129 (72.87%), Postives = 104/129 (80.62%), Query Frame = 0 
Query:   62 AANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPWYCSLRVWF 191
            AANP+V+FDI IG EK GRI+MEL AD  PKTAENFRQ+AT E GF +K S FHR+IP FMLQGGDIT  DGTGG+SIYGRTF DENF  +H G G+LSMANAGPNTNGSQFFITTV+TPW     V F
Sbjct:    3 AANPRVFFDIVIGDEKAGRIVMELFADTVPKTAENFRQLATHEKGFGFKDSIFHRIIPQFMLQGGDITNSDGTGGKSIYGRTFADENFLHRHLGPGMLSMANAGPNTNGSQFFITTVKTPWLDGKHVVF 131
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: WP_106881730.1 (peptidylprolyl isomerase [filamentous cyanobacterium CCP5] >PSN18301.1 peptidylprolyl isomerase [filamentous cyanobacterium CCP5])

HSP 1 Score: 197.6 bits (501), Expect = 3.900e-47
Identity = 95/136 (69.85%), Postives = 104/136 (76.47%), Query Frame = 0 
Query:   62 AANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAG-------FTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPWYCSLRVWF 191
            A NPKV+FDI IGG+  GRI+MEL AD  PKTAENFR + TGE G         YKGSAFHRVIPDFM QGGD TRG+GTGG+SIYGRTF DENF LKH G G+LSMANAGP TNGSQFF+TTV+TPW     V F
Sbjct:    4 ATNPKVFFDITIGGQPAGRIVMELKADTVPKTAENFRALCTGEKGTGVSGKPLHYKGSAFHRVIPDFMCQGGDFTRGNGTGGESIYGRTFEDENFQLKHTGPGILSMANAGPGTNGSQFFLTTVKTPWLDGKHVVF 139
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: ABO47873.1 (cyclophilin [Alexandrium fundyense])

HSP 1 Score: 195.3 bits (495), Expect = 1.900e-46
Identity = 96/138 (69.57%), Postives = 106/138 (76.81%), Query Frame = 0 
Query:   61 MAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAG-------FTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPWYCSLRVWFE 192
            MAANPKV+FD+ IGG  TGRI+MEL ADVAPKTAENFR + TGE G         +KGSAFHRVIPDFM QGGD T G+GTGG+SIYG  F DENFTLKH G G+LSMANAGPNTNGSQFF+ TV+T W     V FE
Sbjct:    1 MAANPKVFFDMIIGGASTGRIVMELRADVAPKTAENFRCLCTGEKGTGKSGKPLHFKGSAFHRVIPDFMCQGGDFTAGNGTGGESIYGSKFADENFTLKHTGPGILSMANAGPNTNGSQFFLCTVKTGWLDGKHVVFE 138
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: OAQ24558.1 (peptidyl-prolyl cis-trans isomerase-like protein [Mortierella elongata AG-77])

HSP 1 Score: 194.9 bits (494), Expect = 2.500e-46
Identity = 91/122 (74.59%), Postives = 100/122 (81.97%), Query Frame = 0 
Query:   61 MAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPW 183
            MAANP+VYFDI   G   GRI+MEL ADVAPK AENFR + TGE GF Y GS+FHR+IP FMLQGGD TRG+GTGG+SIYG  F DENFTLKH G G+LSMANAGPNTNGSQFFI TV+T W
Sbjct:    1 MAANPRVYFDITKDGAPMGRIVMELRADVAPKCAENFRALCTGEKGFGYAGSSFHRIIPQFMLQGGDFTRGNGTGGKSIYGEKFADENFTLKHTGPGVLSMANAGPNTNGSQFFICTVKTAW 122
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: GAX94639.1 (peptidyl-prolyl cis-trans isomerase 3 [Pythium insidiosum])

HSP 1 Score: 194.1 bits (492), Expect = 4.300e-46
Identity = 92/138 (66.67%), Postives = 103/138 (74.64%), Query Frame = 0 
Query:   60 AMAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAG-------FTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPWYCSLRVWF 191
            A  ANP V+FD+ IGG+  GR++ EL  DV PKTAENFRQ+ TGEAG         YKGS FHR+IP+FM QGGD T G G GG+SIYG  FPDENFTLKH+GVGLLSMANAGPNTNGSQFFITTV+ PW     V F
Sbjct:   40 ASDANPSVFFDVSIGGKSAGRLVFELRKDVVPKTAENFRQLCTGEAGVGRSGKPLHYKGSTFHRIIPNFMCQGGDFTXGTGVGGESIYGHKFPDENFTLKHEGVGLLSMANAGPNTNGSQFFITTVDCPWLDGAXVVF 177
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: PRW59363.1 (6-phosphogluconate decarboxylating [Chlorella sorokiniana])

HSP 1 Score: 194.1 bits (492), Expect = 4.300e-46
Identity = 93/137 (67.88%), Postives = 105/137 (76.64%), Query Frame = 0 
Query:   49 AGRRMMLSRSLAMAANP---KVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPW 183
            A  R+ + R++A A  P   KV+FDIEIGG+  GRI + L  D  PKTAENFR + TGE GF YKG  FHRVIPDFM+QGGD T G+GTGG+SIYGR FPDENFT KH   GL+SMANAGPNTNGSQFFITTV TPW
Sbjct:   51 AAARLSVVRAMATANGPVTKKVFFDIEIGGQPAGRITIGLYGDEVPKTAENFRALCTGEMGFGYKGCGFHRVIPDFMIQGGDFTAGNGTGGKSIYGRNFPDENFTYKHTVPGLMSMANAGPNTNGSQFFITTVATPW 187
[Close]
BLAST of NO12G03980 vs. NCBI_GenBank
Match: XP_004226428.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase-like [Ciona intestinalis])

HSP 1 Score: 193.7 bits (491), Expect = 5.600e-46
Identity = 90/128 (70.31%), Postives = 100/128 (78.12%), Query Frame = 0 
Query:   63 ANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPWYCSLRVWF 191
            ANP+V+FDI IGG   GR+IM L ADV PKT ENFR + TGE G +YKGSAFHRVIPDFM QGGD TRGDGTGG+SIYG  F DENFTLKH G G+LSMANAGP+TNGSQFF+ T +T W     V F
Sbjct:    2 ANPRVFFDITIGGSPAGRVIMTLRADVVPKTVENFRALCTGEKGISYKGSAFHRVIPDFMCQGGDFTRGDGTGGKSIYGEKFRDENFTLKHTGPGVLSMANAGPHTNGSQFFLCTAKTAWLDGKHVVF 129
The following BLAST results are available for this feature:
BLAST of NO12G03980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25647.17.200e-8690.22Cyclophilin-like peptidyl-prolyl cis-trans isomera... [more]
OGQ88634.14.900e-5075.57peptidylprolyl isomerase [Deltaproteobacteria bact... [more]
OGR03426.11.600e-4874.62peptidylprolyl isomerase [Deltaproteobacteria bact... [more]
OGR01111.11.700e-4772.87peptidylprolyl isomerase [Deltaproteobacteria bact... [more]
WP_106881730.13.900e-4769.85peptidylprolyl isomerase [filamentous cyanobacteri... [more]
ABO47873.11.900e-4669.57cyclophilin [Alexandrium fundyense][more]
OAQ24558.12.500e-4674.59peptidyl-prolyl cis-trans isomerase-like protein [... [more]
GAX94639.14.300e-4666.67peptidyl-prolyl cis-trans isomerase 3 [Pythium ins... [more]
PRW59363.14.300e-4667.886-phosphogluconate decarboxylating [Chlorella soro... [more]
XP_004226428.15.600e-4670.31PREDICTED: peptidyl-prolyl cis-trans isomerase-lik... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010392NSK010392Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03980.2NO12G03980.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G03980.1NO12G03980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625743gene_5579Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100037g14gene4873Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03980.2NO12G03980.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G03980.1NO12G03980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03980 ID=NO12G03980|Name=NO12G03980|organism=Nannochloropsis oceanica|type=gene|length=1415bp
ACAGGAATGAAACATTCTTCCTCCGCCACCTTTCTTCTCGTCGCTTGCCT
CGTGGTCCTTCACAGCGCCTCTGCCTTCATGTTGCCCCGTGCTTCCGTCT
TGGCTTTCCAGCGCGTAGGACCCTCCATCGCTCGTGCCCCAGCCCATGCT
GCCGGCCGCCGTATGATGCTCTCCCGCAGCCTGGCCATGGCCGCGAACCC
CAAGgtaaggtttggattgtagtgaagaaaagagaaaagcggtcagatgg
actgcaaagatacttaacccgacttccgtcctctccccttgcctcacttg
cactgtcttaagGTGTACTTTGACATCGAGATTGGTGGGGAGAAGACCGG
CCGCATCATCATGGAGCTTGCTGCCGACGTAGCCCCCAAGACTGCCGgta
agtgccaaaacaaatccctcagtctgcgacctctccgtctaccccgttcc
ttcgactcgttccacccccaaggtctcaccgccattacattttcatcttc
tctcaaccactcccggcacacaaataatcacacttccaacgtgcagAGAA
CTTCCGTCAGATCGCTACGGGGGAGGCCGGTTTCACCTATAAGGGCTCGG
CCTTCCACCGCGTGATCCCCGACTTCATGCTCCAGGGCGGCGACATTACT
CGCGGAGACGGCACCGGCGGCCAGTCTATTTACGGACGCACTTTCCCGGA
CGAGAACTTCACACTCAAGCATAAAGGCGTGGGACTCCTGTCTATGGCCA
ATGCCGGGCCTAACACTAACGGCTCCCAGTTTTTCATCACTACCGTCGAG
ACCCCTTGgtactgtagcttacgggtttggtttgagccaccctccatctg
cccttatctgcttcgtttatttcctttttgcctagagtagtcggtcattc
aaccactcacttctgtttccctggttggcatcttcccctttccattgact
taaaatttccctcccacaaacacaactcatatgcagGTTGGACGGACGGC
ACACCGTGTTCGGGAAGGTAACGGAAGGCATGGATGTGGTGCGCAAGGTG
GAGGCCGTCGGATCCCCCCGTGGCACTCCCATCAAAAAGGTTGTCATTGC
TGACTCAGGCGAGCTGAAATAGAGCAAGGCATGGGATTCATAGGAACAAA
CGAAGAGGCGGGAAGGCTGTGTCGTGTCGCGGTGTCTTTCAGCGGGGGCG
AAGAAATTAGAAAAGACACCGGCAGGAGGAGGGAAAAAAAAAAAGGAGAA
GGAGATCTAGTTCATTTCGTGGATATGTGTAAGGGTGGGAGTCTGTCTGA
CTGTGGCATGCCCCGCAGTGGCGCTGCCCTTAACGTTGAGCGTCAATGCA
TCCCAAGGATTATTGACAATGAAAAAAAACATGGAATTCAAAATCATTTA
TAACACCCCGAGGAT
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protein sequence of NO12G03980.2

>NO12G03980.2-protein ID=NO12G03980.2-protein|Name=NO12G03980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MKHSSSATFLLVACLVVLHSASAFMLPRASVLAFQRVGPSIARAPAHAAG
RRMMLSRSLAMAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQI
ATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFT
LKHKGVGLLSMANAGPNTNGSQFFITTVETPWYCSLRVWFEPPSICPYLL
RLFPFCLE*
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protein sequence of NO12G03980.1

>NO12G03980.1-protein ID=NO12G03980.1-protein|Name=NO12G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MKHSSSATFLLVACLVVLHSASAFMLPRASVLAFQRVGPSIARAPAHAAG
RRMMLSRSLAMAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQI
ATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFT
LKHKGVGLLSMANAGPNTNGSQFFITTVETPWLDGRHTVFGKVTEGMDVV
RKVEAVGSPRGTPIKKVVIADSGELK*
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Synonyms
Publications