NO12G03980.2, NO12G03980.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03980.2
Unique NameNO12G03980.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr12:1139249..1140663 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1139249..1140663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03980.2 vs.
Match: EWM25647.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 326.2 bits (835), Expect = 7.200e-86
Identity = 166/184 (90.22%), Postives = 174/184 (94.57%), Query Frame = 0 
Query:    1 MKHSSSATFL-LVACLVVL-HSASAFMLPRASVLAFQRVGPSIARAPAHAAGRRMMLSRSLAMAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPW 183
            M  SSS++FL LVACLV+  +SASAFMLPR S LAFQRVGPS+ARAPAHAAGRRMMLSR LAMAANP+VYFD+EIGGEK GRI MELAADVAPKTAENFRQIATGEAGFTYKGSAFHR+IPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPW
Sbjct:    1 MSRSSSSSFLTLVACLVLSSYSASAFMLPRISSLAFQRVGPSVARAPAHAAGRRMMLSRGLAMAANPQVYFDVEIGGEKAGRITMELAADVAPKTAENFRQIATGEAGFTYKGSAFHRIIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFTLKHKGVGLLSMANAGPNTNGSQFFITTVETPW 184
The following BLAST results are available for this feature:
BLAST of NO12G03980.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25647.17.200e-8690.22Cyclophilin-like peptidyl-prolyl cis-trans isomera... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03980NO12G03980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03980.2NO12G03980.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03980.2.cds1NO12G03980.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03980.2.cds2NO12G03980.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03980.2.cds3NO12G03980.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03980.2 ID=NO12G03980.2|Name=NO12G03980.2|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ACAGGAATGAAACATTCTTCCTCCGCCACCTTTCTTCTCGTCGCTTGCCT
CGTGGTCCTTCACAGCGCCTCTGCCTTCATGTTGCCCCGTGCTTCCGTCT
TGGCTTTCCAGCGCGTAGGACCCTCCATCGCTCGTGCCCCAGCCCATGCT
GCCGGCCGCCGTATGATGCTCTCCCGCAGCCTGGCCATGGCCGCGAACCC
CAAGGTGTACTTTGACATCGAGATTGGTGGGGAGAAGACCGGCCGCATCA
TCATGGAGCTTGCTGCCGACGTAGCCCCCAAGACTGCCGAGAACTTCCGT
CAGATCGCTACGGGGGAGGCCGGTTTCACCTATAAGGGCTCGGCCTTCCA
CCGCGTGATCCCCGACTTCATGCTCCAGGGCGGCGACATTACTCGCGGAG
ACGGCACCGGCGGCCAGTCTATTTACGGACGCACTTTCCCGGACGAGAAC
TTCACACTCAAGCATAAAGGCGTGGGACTCCTGTCTATGGCCAATGCCGG
GCCTAACACTAACGGCTCCCAGTTTTTCATCACTACCGTCGAGACCCCTT
GGTACTGTAGCTTACGGGTTTGGTTTGAGCCACCCTCCATCTGCCCTTAT
CTGCTTCGTTTATTTCCTTTTTGCCTAGAGTAGTCGGTCATTCAACCACT
CACTTCTGTTTCCCTGGTTGGCATCTTCCCCTTTCCATTGACTTAAAATT
TCCCTCCCACAAACACAACTCATATGCAGGTTGGACGGACGGCACACCGT
GTTCGGGAAGGTAACGGAAGGCATGGATGTGGTGCGCAAGGTGGAGGCCG
TCGGATCCCCCCGTGGCACTCCCATCAAAAAGGTTGTCATTGCTGACTCA
GGCGAGCTGAAATAGAGCAAGGCATGGGATTCATAGGAACAAACGAAGAG
GCGGGAAGGCTGTGTCGTGTCGCGGTGTCTTTCAGCGGGGGCGAAGAAAT
TAGAAAAGACACCGGCAGGAGGAGGGAAAAAAAAAAAGGAGAAGGAGATC
TAGTTCATTTCGTGGATATGTGTAAGGGTGGGAGTCTGTCTGACTGTGGC
ATGCCCCGCAGTGGCGCTGCCCTTAACGTTGAGCGTCAATGCATCCCAAG
GATTATTGACAATGAAAAAAAACATGGAATTCAAAATCATTTATAACACC
CCGAGGAT
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protein sequence of NO12G03980.2

>NO12G03980.2-protein ID=NO12G03980.2-protein|Name=NO12G03980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MKHSSSATFLLVACLVVLHSASAFMLPRASVLAFQRVGPSIARAPAHAAG
RRMMLSRSLAMAANPKVYFDIEIGGEKTGRIIMELAADVAPKTAENFRQI
ATGEAGFTYKGSAFHRVIPDFMLQGGDITRGDGTGGQSIYGRTFPDENFT
LKHKGVGLLSMANAGPNTNGSQFFITTVETPWYCSLRVWFEPPSICPYLL
RLFPFCLE*
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mRNA from alignment at chr12:1139249..1140663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03980.2 ID=NO12G03980.2|Name=NO12G03980.2|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp|location=Sequence derived from alignment at chr12:1139249..1140663- (Nannochloropsis oceanica)
ACAGGAATGAAACATTCTTCCTCCGCCACCTTTCTTCTCGTCGCTTGCCT
CGTGGTCCTTCACAGCGCCTCTGCCTTCATGTTGCCCCGTGCTTCCGTCT
TGGCTTTCCAGCGCGTAGGACCCTCCATCGCTCGTGCCCCAGCCCATGCT
GCCGGCCGCCGTATGATGCTCTCCCGCAGCCTGGCCATGGCCGCGAACCC
CAAGGTAAGGTTTGGATTGTAGTGAAGAAAAGAGAAAAGCGGTCAGATGG
ACTGCAAAGATACTTAACCCGACTTCCGTCCTCTCCCCTTGCCTCACTTG
CACTGTCTTAAGGTGTACTTTGACATCGAGATTGGTGGGGAGAAGACCGG
CCGCATCATCATGGAGCTTGCTGCCGACGTAGCCCCCAAGACTGCCGGTA
AGTGCCAAAACAAATCCCTCAGTCTGCGACCTCTCCGTCTACCCCGTTCC
TTCGACTCGTTCCACCCCCAAGGTCTCACCGCCATTACATTTTCATCTTC
TCTCAACCACTCCCGGCACACAAATAATCACACTTCCAACGTGCAGAGAA
CTTCCGTCAGATCGCTACGGGGGAGGCCGGTTTCACCTATAAGGGCTCGG
CCTTCCACCGCGTGATCCCCGACTTCATGCTCCAGGGCGGCGACATTACT
CGCGGAGACGGCACCGGCGGCCAGTCTATTTACGGACGCACTTTCCCGGA
CGAGAACTTCACACTCAAGCATAAAGGCGTGGGACTCCTGTCTATGGCCA
ATGCCGGGCCTAACACTAACGGCTCCCAGTTTTTCATCACTACCGTCGAG
ACCCCTTGGTACTGTAGCTTACGGGTTTGGTTTGAGCCACCCTCCATCTG
CCCTTATCTGCTTCGTTTATTTCCTTTTTGCCTAGAGTAGTCGGTCATTC
AACCACTCACTTCTGTTTCCCTGGTTGGCATCTTCCCCTTTCCATTGACT
TAAAATTTCCCTCCCACAAACACAACTCATATGCAGGTTGGACGGACGGC
ACACCGTGTTCGGGAAGGTAACGGAAGGCATGGATGTGGTGCGCAAGGTG
GAGGCCGTCGGATCCCCCCGTGGCACTCCCATCAAAAAGGTTGTCATTGC
TGACTCAGGCGAGCTGAAATAGAGCAAGGCATGGGATTCATAGGAACAAA
CGAAGAGGCGGGAAGGCTGTGTCGTGTCGCGGTGTCTTTCAGCGGGGGCG
AAGAAATTAGAAAAGACACCGGCAGGAGGAGGGAAAAAAAAAAAGGAGAA
GGAGATCTAGTTCATTTCGTGGATATGTGTAAGGGTGGGAGTCTGTCTGA
CTGTGGCATGCCCCGCAGTGGCGCTGCCCTTAACGTTGAGCGTCAATGCA
TCCCAAGGATTATTGACAATGAAAAAAAACATGGAATTCAAAATCATTTA
TAACACCCCGAGGAT
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Coding sequence (CDS) from alignment at chr12:1139249..1140663-

>NO12G03980.2 ID=NO12G03980.2|Name=NO12G03980.2|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at chr12:1139249..1140663- (Nannochloropsis oceanica)
ATGAAACATTCTTCCTCCGCCACCTTTCTTCTCGTCGCTTGCCTCGTGGT
CCTTCACAGCGCCTCTGCCTTCATGTTGCCCCGTGCTTCCGTCTTGGCTT
TCCAGCGCGTAGGACCCTCCATCGCTCGTGCCCCAGCCCATGCTGCCGGC
CGCCGTATGATGCTCTCCCGCAGCCTGGCCATGGCCGCGAACCCCAAGGT
GTACTTTGACATCGAGATTGGTGGGGAGAAGACCGGCCGCATCATCATGG
AGCTTGCTGCCGACGTAGCCCCCAAGACTGCCGAGAACTTCCGTCAGATC
GCTACGGGGGAGGCCGGTTTCACCTATAAGGGCTCGGCCTTCCACCGCGT
GATCCCCGACTTCATGCTCCAGGGCGGCGACATTACTCGCGGAGACGGCA
CCGGCGGCCAGTCTATTTACGGACGCACTTTCCCGGACGAGAACTTCACA
CTCAAGCATAAAGGCGTGGGACTCCTGTCTATGGCCAATGCCGGGCCTAA
CACTAACGGCTCCCAGTTTTTCATCACTACCGTCGAGACCCCTTGGTACT
GTAGCTTACGGGTTTGGTTTGAGCCACCCTCCATCTGCCCTTATCTGCTT
CGTTTATTTCCTTTTTGCCTAGAGTAG
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Synonyms
Publications