NO12G03790, NO12G03790 (gene) Nannochloropsis oceanica

Overview
NameNO12G03790
Unique NameNO12G03790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1722
Alignment locationchr12:1056963..1058684 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1056963..1058684 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G03790 vs. NCBI_GenBank
Match: XP_002289545.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93082.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 68.2 bits (165), Expect = 9.700e-8
Identity = 70/242 (28.93%), Postives = 112/242 (46.28%), Query Frame = 0 
Query:  145 RASSFLAHLAHLAKHTLLLLLDLLLLPQAFGWALDLSTLPLFAPTTFKTRVKFLQAWPFVSLAAHWLGGFTFLALAGLVAMEFRRVLRPDVLRGVLLQPGEAMEWEEDGGGQAGREGGRSVLRYAKRLLVSMGMVYGPLLLLAVYSPVHFGHHLLIPFS--HLLGFPPPSPLHLAFLPSFQHAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLELQLPIELFLFHIALPLLLERFR 385
            R S  L   + +AK  +LL + +LLLP + G  LD++TLPLF   T   R+ +     F S+  HW+ G TF+ L  +  ++ R V+ P++L  V+       E + D  G   +E G +   +AKR+L+S+G +Y  LL L ++ P     HLL+ F+    L F  P   H  F+P                                         ++Q+P ELFLFH+ +  +LE+++
Sbjct:  541 RLSVVLECASAIAKVVILLCIKMLLLPLSLGICLDMTTLPLF-DKTLDDRIAYAGTDLFGSIFLHWVSGITFMLLVTVSVLQLREVVHPEILARVI----RPQEPQPDLLGNLLQENGPT---HAKRILLSLG-IYAALLTLHIWLP----SHLLVSFNLGKKLPFFRPKLWHF-FMP-----------------------------------------QIQVPAELFLFHLCMLSILEKYK 727
The following BLAST results are available for this feature:
BLAST of NO12G03790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002289545.19.700e-828.93predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03790.1NO12G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03790.1NO12G03790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03790 ID=NO12G03790|Name=NO12G03790|organism=Nannochloropsis oceanica|type=gene|length=1722bp
ATGGAGGGGGGGACGAAGAGGACGAGTGGCAGCAGCTCCTCTCTCCCCTT
CTCCTCCTTCACATCCTCCTTGCGAGACGCCCTGCTTACGCAACTCCAAG
CTCTTATCGAGTACCTTATTTTCCCGACCCACCACATCTCCCCCTCCTCC
ACCTCTTCCTCGCATTTATCCTCTCCCCGTCTTCCCACACAGTCCAACAA
CGCATCCACTTCCCGGCTCGTCCACTCTCTCGGCTCTCTCCTCTCTAGCG
GCGGCGAGAACTCCTCCTCTCCCTCCATTCCCCCCCCCTCCTCCTCTCCC
CTCCTCCTAGACCACCTCGCCCTCCTCTCTGTCGGATACGTGACCCTCTT
CCTCGTCCTCGTCGTCTCTCTCCTCCTTCTCCTCGTCCTTCACACCCTCC
TCCACCCACACGCCGCTGTTCGCTCCCTCCGCCGGGCCTCCTCCTTCCTC
GCCCACCTCGCCCACCTTGCCAAACACACCCTCCTCCTTCTCCTCGACCT
CCTCCTCCTCCCCCAAGCGTTCGGCTGGGCACTCGATCTATCCACCCTCC
CTCTATTCGCGCCCACCACCTTCAAGACCCGAGTCAAGTTCCTCCAGGCG
TGGCCCTTCGTCTCCCTAGCTGCGCATTGGCTGGGAGGGTTCACTTTCCT
GGCCTTGGCCGGCCTGGTGGCCATGGAATTTAGGAGGGTGCTTCGTCCAG
ACGTGCTGAGGGGTGTCCTGCTGCAGCCGGGGGAGGCGATGGAATGGGAG
GAAGACGGAGGGGGGCAGGCAGGGAGGGAGGGAGGGCGGTCGGTCTTGCG
GTATGCCAAGCGGCTTTTGGTGTCCATGGGAATGGTGTACGGCCCATTAC
TTCTGTTGGCCGTTTACTCCCCTGTTCACTTTGGGCACCACCTCCTCATC
CCCTTCTCCCACCTCCTCGGCTTCCCCCCTCCCTCCCCCCTCCATCTCGC
CTTCCTCCCCTCCTTTCAGCATGCCGCCCCCTCCTCCAATTCGGCCACCA
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATTCAGTAGCAACAATACC
AGCAACAACAGCAGTCCCGCCCCTCCTTACCTCGAGCTGCAGCTCCCCAT
CGAGCTCTTCCTCTTCCACATCGCCCTGCCGCTCCTCCTTGAGCGCTTTC
GTCTCCGGAATCTGATCAGAGAGGGGGTCGAGAAGGGCTTCGGTTCCCTT
TGCCTCCTCTTCGGTCTGGGCCCGAGCCTGCTCGATATGGACACCTTACG
ACAGCTACAGCTGCAACACCCGCACCAGCAACAACCACAGCAGCCCCCAC
AGCGAGGAAATGGAGGCGAGGAACGGATCGGTGGTGGCAATGGTCGTGCG
GTTGCTGCTGCTGGTGCTCCTCCTGCTCCTCCTCTGGCTGCGCCTCTGCC
TCTTATCATTCGTCCCGAGCCTACCGAGGGCGAAGGCGGGAGGGAAGAAA
GGAAGGAGGAAGGCGCCCTAACTTTTTACCCTTTACGGGTCGTGGGGCTG
TGTATTTCCATGTGTGTGTGCATCGCAGTCGTGGCCTCCCTGGTGGTGCA
AGTGCCCTTGAGGGTGGGGAGAGAGGGCCTGCGCCGTCTAGGGCTACCTA
CCGGTCACGATCTGTATAACCTGGCCGTGGGATTCCTTCTTGTGGTGTTG
GTGGGCTCGGTGCTGGGGAAAGGGTGGCAGGTATTTGTCGGGGGTGAAGG
AGGAGGGGGGGGGAAGCAGTGA
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protein sequence of NO12G03790.1

>NO12G03790.1-protein ID=NO12G03790.1-protein|Name=NO12G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MEGGTKRTSGSSSSLPFSSFTSSLRDALLTQLQALIEYLIFPTHHISPSS
TSSSHLSSPRLPTQSNNASTSRLVHSLGSLLSSGGENSSSPSIPPPSSSP
LLLDHLALLSVGYVTLFLVLVVSLLLLLVLHTLLHPHAAVRSLRRASSFL
AHLAHLAKHTLLLLLDLLLLPQAFGWALDLSTLPLFAPTTFKTRVKFLQA
WPFVSLAAHWLGGFTFLALAGLVAMEFRRVLRPDVLRGVLLQPGEAMEWE
EDGGGQAGREGGRSVLRYAKRLLVSMGMVYGPLLLLAVYSPVHFGHHLLI
PFSHLLGFPPPSPLHLAFLPSFQHAAPSSNSATTSSSSSSSSSSFSSNNT
SNNSSPAPPYLELQLPIELFLFHIALPLLLERFRLRNLIREGVEKGFGSL
CLLFGLGPSLLDMDTLRQLQLQHPHQQQPQQPPQRGNGGEERIGGGNGRA
VAAAGAPPAPPLAAPLPLIIRPEPTEGEGGREERKEEGALTFYPLRVVGL
CISMCVCIAVVASLVVQVPLRVGREGLRRLGLPTGHDLYNLAVGFLLVVL
VGSVLGKGWQVFVGGEGGGGGKQ*
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Synonyms
Publications