NO12G03790.1, NO12G03790.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G03790.1
Unique Name	NO12G03790.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1722
Alignment location	chr12:1056963..1058684 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:1056963..1058684 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO12G03790.1 vs.

BLAST of NO12G03790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G03790	NO12G03790	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G03790.1	NO12G03790.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G03790.1.cds1	NO12G03790.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:1056963..1058684-
coding sequence from alignment at chr12:1056963..1058684-

mRNA sequence

>NO12G03790.1 ID=NO12G03790.1|Name=NO12G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp
ATGGAGGGGGGGACGAAGAGGACGAGTGGCAGCAGCTCCTCTCTCCCCTT
CTCCTCCTTCACATCCTCCTTGCGAGACGCCCTGCTTACGCAACTCCAAG
CTCTTATCGAGTACCTTATTTTCCCGACCCACCACATCTCCCCCTCCTCC
ACCTCTTCCTCGCATTTATCCTCTCCCCGTCTTCCCACACAGTCCAACAA
CGCATCCACTTCCCGGCTCGTCCACTCTCTCGGCTCTCTCCTCTCTAGCG
GCGGCGAGAACTCCTCCTCTCCCTCCATTCCCCCCCCCTCCTCCTCTCCC
CTCCTCCTAGACCACCTCGCCCTCCTCTCTGTCGGATACGTGACCCTCTT
CCTCGTCCTCGTCGTCTCTCTCCTCCTTCTCCTCGTCCTTCACACCCTCC
TCCACCCACACGCCGCTGTTCGCTCCCTCCGCCGGGCCTCCTCCTTCCTC
GCCCACCTCGCCCACCTTGCCAAACACACCCTCCTCCTTCTCCTCGACCT
CCTCCTCCTCCCCCAAGCGTTCGGCTGGGCACTCGATCTATCCACCCTCC
CTCTATTCGCGCCCACCACCTTCAAGACCCGAGTCAAGTTCCTCCAGGCG
TGGCCCTTCGTCTCCCTAGCTGCGCATTGGCTGGGAGGGTTCACTTTCCT
GGCCTTGGCCGGCCTGGTGGCCATGGAATTTAGGAGGGTGCTTCGTCCAG
ACGTGCTGAGGGGTGTCCTGCTGCAGCCGGGGGAGGCGATGGAATGGGAG
GAAGACGGAGGGGGGCAGGCAGGGAGGGAGGGAGGGCGGTCGGTCTTGCG
GTATGCCAAGCGGCTTTTGGTGTCCATGGGAATGGTGTACGGCCCATTAC
TTCTGTTGGCCGTTTACTCCCCTGTTCACTTTGGGCACCACCTCCTCATC
CCCTTCTCCCACCTCCTCGGCTTCCCCCCTCCCTCCCCCCTCCATCTCGC
CTTCCTCCCCTCCTTTCAGCATGCCGCCCCCTCCTCCAATTCGGCCACCA
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATTCAGTAGCAACAATACC
AGCAACAACAGCAGTCCCGCCCCTCCTTACCTCGAGCTGCAGCTCCCCAT
CGAGCTCTTCCTCTTCCACATCGCCCTGCCGCTCCTCCTTGAGCGCTTTC
GTCTCCGGAATCTGATCAGAGAGGGGGTCGAGAAGGGCTTCGGTTCCCTT
TGCCTCCTCTTCGGTCTGGGCCCGAGCCTGCTCGATATGGACACCTTACG
ACAGCTACAGCTGCAACACCCGCACCAGCAACAACCACAGCAGCCCCCAC
AGCGAGGAAATGGAGGCGAGGAACGGATCGGTGGTGGCAATGGTCGTGCG
GTTGCTGCTGCTGGTGCTCCTCCTGCTCCTCCTCTGGCTGCGCCTCTGCC
TCTTATCATTCGTCCCGAGCCTACCGAGGGCGAAGGCGGGAGGGAAGAAA
GGAAGGAGGAAGGCGCCCTAACTTTTTACCCTTTACGGGTCGTGGGGCTG
TGTATTTCCATGTGTGTGTGCATCGCAGTCGTGGCCTCCCTGGTGGTGCA
AGTGCCCTTGAGGGTGGGGAGAGAGGGCCTGCGCCGTCTAGGGCTACCTA
CCGGTCACGATCTGTATAACCTGGCCGTGGGATTCCTTCTTGTGGTGTTG
GTGGGCTCGGTGCTGGGGAAAGGGTGGCAGGTATTTGTCGGGGGTGAAGG
AGGAGGGGGGGGGAAGCAGTGA

protein sequence of NO12G03790.1

>NO12G03790.1-protein ID=NO12G03790.1-protein|Name=NO12G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MEGGTKRTSGSSSSLPFSSFTSSLRDALLTQLQALIEYLIFPTHHISPSS
TSSSHLSSPRLPTQSNNASTSRLVHSLGSLLSSGGENSSSPSIPPPSSSP
LLLDHLALLSVGYVTLFLVLVVSLLLLLVLHTLLHPHAAVRSLRRASSFL
AHLAHLAKHTLLLLLDLLLLPQAFGWALDLSTLPLFAPTTFKTRVKFLQA
WPFVSLAAHWLGGFTFLALAGLVAMEFRRVLRPDVLRGVLLQPGEAMEWE
EDGGGQAGREGGRSVLRYAKRLLVSMGMVYGPLLLLAVYSPVHFGHHLLI
PFSHLLGFPPPSPLHLAFLPSFQHAAPSSNSATTSSSSSSSSSSFSSNNT
SNNSSPAPPYLELQLPIELFLFHIALPLLLERFRLRNLIREGVEKGFGSL
CLLFGLGPSLLDMDTLRQLQLQHPHQQQPQQPPQRGNGGEERIGGGNGRA
VAAAGAPPAPPLAAPLPLIIRPEPTEGEGGREERKEEGALTFYPLRVVGL
CISMCVCIAVVASLVVQVPLRVGREGLRRLGLPTGHDLYNLAVGFLLVVL
VGSVLGKGWQVFVGGEGGGGGKQ*

mRNA from alignment at chr12:1056963..1058684-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G03790.1 ID=NO12G03790.1|Name=NO12G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp|location=Sequence derived from alignment at chr12:1056963..1058684- (Nannochloropsis oceanica)
ATGGAGGGGGGGACGAAGAGGACGAGTGGCAGCAGCTCCTCTCTCCCCTT
CTCCTCCTTCACATCCTCCTTGCGAGACGCCCTGCTTACGCAACTCCAAG
CTCTTATCGAGTACCTTATTTTCCCGACCCACCACATCTCCCCCTCCTCC
ACCTCTTCCTCGCATTTATCCTCTCCCCGTCTTCCCACACAGTCCAACAA
CGCATCCACTTCCCGGCTCGTCCACTCTCTCGGCTCTCTCCTCTCTAGCG
GCGGCGAGAACTCCTCCTCTCCCTCCATTCCCCCCCCCTCCTCCTCTCCC
CTCCTCCTAGACCACCTCGCCCTCCTCTCTGTCGGATACGTGACCCTCTT
CCTCGTCCTCGTCGTCTCTCTCCTCCTTCTCCTCGTCCTTCACACCCTCC
TCCACCCACACGCCGCTGTTCGCTCCCTCCGCCGGGCCTCCTCCTTCCTC
GCCCACCTCGCCCACCTTGCCAAACACACCCTCCTCCTTCTCCTCGACCT
CCTCCTCCTCCCCCAAGCGTTCGGCTGGGCACTCGATCTATCCACCCTCC
CTCTATTCGCGCCCACCACCTTCAAGACCCGAGTCAAGTTCCTCCAGGCG
TGGCCCTTCGTCTCCCTAGCTGCGCATTGGCTGGGAGGGTTCACTTTCCT
GGCCTTGGCCGGCCTGGTGGCCATGGAATTTAGGAGGGTGCTTCGTCCAG
ACGTGCTGAGGGGTGTCCTGCTGCAGCCGGGGGAGGCGATGGAATGGGAG
GAAGACGGAGGGGGGCAGGCAGGGAGGGAGGGAGGGCGGTCGGTCTTGCG
GTATGCCAAGCGGCTTTTGGTGTCCATGGGAATGGTGTACGGCCCATTAC
TTCTGTTGGCCGTTTACTCCCCTGTTCACTTTGGGCACCACCTCCTCATC
CCCTTCTCCCACCTCCTCGGCTTCCCCCCTCCCTCCCCCCTCCATCTCGC
CTTCCTCCCCTCCTTTCAGCATGCCGCCCCCTCCTCCAATTCGGCCACCA
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATTCAGTAGCAACAATACC
AGCAACAACAGCAGTCCCGCCCCTCCTTACCTCGAGCTGCAGCTCCCCAT
CGAGCTCTTCCTCTTCCACATCGCCCTGCCGCTCCTCCTTGAGCGCTTTC
GTCTCCGGAATCTGATCAGAGAGGGGGTCGAGAAGGGCTTCGGTTCCCTT
TGCCTCCTCTTCGGTCTGGGCCCGAGCCTGCTCGATATGGACACCTTACG
ACAGCTACAGCTGCAACACCCGCACCAGCAACAACCACAGCAGCCCCCAC
AGCGAGGAAATGGAGGCGAGGAACGGATCGGTGGTGGCAATGGTCGTGCG
GTTGCTGCTGCTGGTGCTCCTCCTGCTCCTCCTCTGGCTGCGCCTCTGCC
TCTTATCATTCGTCCCGAGCCTACCGAGGGCGAAGGCGGGAGGGAAGAAA
GGAAGGAGGAAGGCGCCCTAACTTTTTACCCTTTACGGGTCGTGGGGCTG
TGTATTTCCATGTGTGTGTGCATCGCAGTCGTGGCCTCCCTGGTGGTGCA
AGTGCCCTTGAGGGTGGGGAGAGAGGGCCTGCGCCGTCTAGGGCTACCTA
CCGGTCACGATCTGTATAACCTGGCCGTGGGATTCCTTCTTGTGGTGTTG
GTGGGCTCGGTGCTGGGGAAAGGGTGGCAGGTATTTGTCGGGGGTGAAGG
AGGAGGGGGGGGGAAGCAGTGA

Coding sequence (CDS) from alignment at chr12:1056963..1058684-

>NO12G03790.1 ID=NO12G03790.1|Name=NO12G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at chr12:1056963..1058684- (Nannochloropsis oceanica)
ATGGAGGGGGGGACGAAGAGGACGAGTGGCAGCAGCTCCTCTCTCCCCTT
CTCCTCCTTCACATCCTCCTTGCGAGACGCCCTGCTTACGCAACTCCAAG
CTCTTATCGAGTACCTTATTTTCCCGACCCACCACATCTCCCCCTCCTCC
ACCTCTTCCTCGCATTTATCCTCTCCCCGTCTTCCCACACAGTCCAACAA
CGCATCCACTTCCCGGCTCGTCCACTCTCTCGGCTCTCTCCTCTCTAGCG
GCGGCGAGAACTCCTCCTCTCCCTCCATTCCCCCCCCCTCCTCCTCTCCC
CTCCTCCTAGACCACCTCGCCCTCCTCTCTGTCGGATACGTGACCCTCTT
CCTCGTCCTCGTCGTCTCTCTCCTCCTTCTCCTCGTCCTTCACACCCTCC
TCCACCCACACGCCGCTGTTCGCTCCCTCCGCCGGGCCTCCTCCTTCCTC
GCCCACCTCGCCCACCTTGCCAAACACACCCTCCTCCTTCTCCTCGACCT
CCTCCTCCTCCCCCAAGCGTTCGGCTGGGCACTCGATCTATCCACCCTCC
CTCTATTCGCGCCCACCACCTTCAAGACCCGAGTCAAGTTCCTCCAGGCG
TGGCCCTTCGTCTCCCTAGCTGCGCATTGGCTGGGAGGGTTCACTTTCCT
GGCCTTGGCCGGCCTGGTGGCCATGGAATTTAGGAGGGTGCTTCGTCCAG
ACGTGCTGAGGGGTGTCCTGCTGCAGCCGGGGGAGGCGATGGAATGGGAG
GAAGACGGAGGGGGGCAGGCAGGGAGGGAGGGAGGGCGGTCGGTCTTGCG
GTATGCCAAGCGGCTTTTGGTGTCCATGGGAATGGTGTACGGCCCATTAC
TTCTGTTGGCCGTTTACTCCCCTGTTCACTTTGGGCACCACCTCCTCATC
CCCTTCTCCCACCTCCTCGGCTTCCCCCCTCCCTCCCCCCTCCATCTCGC
CTTCCTCCCCTCCTTTCAGCATGCCGCCCCCTCCTCCAATTCGGCCACCA
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATTCAGTAGCAACAATACC
AGCAACAACAGCAGTCCCGCCCCTCCTTACCTCGAGCTGCAGCTCCCCAT
CGAGCTCTTCCTCTTCCACATCGCCCTGCCGCTCCTCCTTGAGCGCTTTC
GTCTCCGGAATCTGATCAGAGAGGGGGTCGAGAAGGGCTTCGGTTCCCTT
TGCCTCCTCTTCGGTCTGGGCCCGAGCCTGCTCGATATGGACACCTTACG
ACAGCTACAGCTGCAACACCCGCACCAGCAACAACCACAGCAGCCCCCAC
AGCGAGGAAATGGAGGCGAGGAACGGATCGGTGGTGGCAATGGTCGTGCG
GTTGCTGCTGCTGGTGCTCCTCCTGCTCCTCCTCTGGCTGCGCCTCTGCC
TCTTATCATTCGTCCCGAGCCTACCGAGGGCGAAGGCGGGAGGGAAGAAA
GGAAGGAGGAAGGCGCCCTAACTTTTTACCCTTTACGGGTCGTGGGGCTG
TGTATTTCCATGTGTGTGTGCATCGCAGTCGTGGCCTCCCTGGTGGTGCA
AGTGCCCTTGAGGGTGGGGAGAGAGGGCCTGCGCCGTCTAGGGCTACCTA
CCGGTCACGATCTGTATAACCTGGCCGTGGGATTCCTTCTTGTGGTGTTG
GTGGGCTCGGTGCTGGGGAAAGGGTGGCAGGTATTTGTCGGGGGTGAAGG
AGGAGGGGGGGGGAAGCAGTGA

Synonyms

Publications